Wall clock time and date at job start Tue Mar 31 2020 07:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99891 * 2 1 4 4 H 1.09004 * 109.86457 * 358.99338 * 3 2 1 5 5 O 1.43740 * 109.87613 * 237.83430 * 3 2 1 6 6 C 1.44378 * 106.97368 * 214.06067 * 5 3 2 7 7 C 1.54995 * 103.49015 * 40.06340 * 6 5 3 8 8 C 1.54095 * 109.87998 * 120.00304 * 3 2 1 9 9 H 1.09007 * 110.48446 * 2.77849 * 8 3 2 10 10 N 1.46498 * 110.60217 * 240.18818 * 8 3 2 11 11 C 1.34774 * 120.00229 * 158.71044 * 10 8 3 12 12 O 1.21591 * 119.99862 * 355.01749 * 11 10 8 13 13 N 1.34776 * 120.00244 * 175.01431 * 11 10 8 14 14 C 1.46924 * 120.62826 * 5.22499 * 13 11 10 15 15 C 1.53200 * 108.77263 * 126.36981 * 14 13 11 16 16 C 1.53035 * 109.31003 * 54.63856 * 15 14 13 17 17 C 1.53036 * 109.53780 * 298.63215 * 16 15 14 18 18 H 1.09002 * 109.49886 * 301.38487 * 17 16 15 19 19 C 1.50702 * 109.49932 * 181.32197 * 17 16 15 20 20 H 1.07997 * 119.99884 * 359.97438 * 19 17 16 21 21 C 1.37872 * 120.00332 * 180.02562 * 19 17 16 22 22 N 1.31519 * 120.00013 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00257 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46963 * 60.00256 * 23 21 19 25 25 H 1.48500 * 109.47036 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46975 * 299.99777 * 23 21 19 27 27 C 1.46926 * 120.63206 * 184.94975 * 13 11 10 28 28 H 1.08005 * 119.99880 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00192 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00192 * 180.02562 * 2 1 3 31 31 H 1.09003 * 110.62074 * 281.56037 * 6 5 3 32 32 H 1.08997 * 110.61894 * 158.56524 * 6 5 3 33 33 H 1.09002 * 110.90690 * 204.77787 * 7 6 5 34 34 H 1.08994 * 110.90867 * 81.17417 * 7 6 5 35 35 H 0.97004 * 119.99664 * 338.71206 * 10 8 3 36 36 H 1.09001 * 109.59247 * 246.15416 * 14 13 11 37 37 H 1.08999 * 109.58699 * 6.44668 * 14 13 11 38 38 H 1.09005 * 109.49338 * 174.59006 * 15 14 13 39 39 H 1.08998 * 109.49945 * 294.64913 * 15 14 13 40 40 H 1.08998 * 109.46295 * 58.65298 * 16 15 14 41 41 H 1.09005 * 109.45526 * 178.61604 * 16 15 14 42 42 H 0.96992 * 120.00238 * 179.97438 * 22 21 19 43 43 H 1.08996 * 109.58604 * 353.41754 * 27 13 11 44 44 H 1.09004 * 109.58480 * 113.84638 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3610 2.1384 -0.0180 5 8 2.9311 1.3686 -1.1443 6 6 4.1110 2.0951 -0.7389 7 6 4.3852 1.5692 0.6931 8 6 2.9530 1.3966 1.2549 9 1 2.8810 0.4805 1.8412 10 7 2.5784 2.5556 2.0689 11 6 2.9046 2.5948 3.3760 12 8 3.4287 1.6314 3.9010 13 7 2.6498 3.7019 4.1013 14 6 1.9153 4.8299 3.5124 15 6 0.7269 5.1706 4.4172 16 6 1.2302 5.4226 5.8403 17 6 1.8994 4.1558 6.3783 18 1 1.1844 3.3331 6.3654 19 6 2.3658 4.3946 7.7913 20 1 2.2020 5.3541 8.2591 21 6 3.0027 3.3885 8.4864 22 7 3.2026 2.2202 7.9166 23 14 3.5815 3.6848 10.2376 24 1 2.4170 4.0297 11.0922 25 1 4.2306 2.4552 10.7591 26 1 4.5565 4.8047 10.2538 27 6 3.0961 3.8013 5.4976 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.9152 3.1672 -0.7231 32 1 4.9481 1.8665 -1.3985 33 1 4.9460 2.3004 1.2754 34 1 4.9090 0.6138 0.6630 35 1 2.0956 3.2948 1.6671 36 1 2.5745 5.6944 3.4342 37 1 1.5553 4.5540 2.5213 38 1 0.2298 6.0657 4.0432 39 1 0.0228 4.3385 4.4218 40 1 1.9526 6.2388 5.8308 41 1 0.3895 5.6892 6.4809 42 1 3.6510 1.5125 8.4054 43 1 3.5128 2.8461 5.8168 44 1 3.8537 4.5802 5.5845 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595642025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:26 Heat of formation + Delta-G solvation = -70.684149 kcal Electronic energy + Delta-G solvation = -24647.783935 eV Core-core repulsion = 21178.825490 eV Total energy + Delta-G solvation = -3468.958445 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64597 -40.38141 -38.40650 -35.77958 -35.16557 -34.73560 -33.46755 -31.81755 -31.26401 -28.96799 -27.00451 -26.01867 -23.94504 -23.45498 -22.78940 -21.55739 -21.15767 -20.18213 -19.13182 -18.31100 -17.73269 -17.44095 -16.76780 -16.37156 -16.30903 -16.07689 -15.23760 -15.16691 -15.10967 -14.96154 -14.48030 -14.30041 -14.08389 -13.95131 -13.56655 -13.43605 -13.07306 -12.84462 -12.70315 -12.36103 -12.27462 -12.25809 -12.12340 -12.08505 -11.81896 -11.62194 -11.23678 -10.94770 -10.86841 -10.78862 -10.60243 -10.50129 -10.10300 -9.27785 -8.08812 -6.26782 1.19464 1.41591 1.42992 1.51478 1.70601 2.20539 2.42753 2.89321 3.11789 3.20707 3.52069 3.59338 3.84747 4.01236 4.03201 4.15393 4.21695 4.24415 4.28854 4.44131 4.60560 4.69346 4.74167 4.81619 4.82102 4.85399 4.88823 4.96964 5.01123 5.11312 5.26384 5.27977 5.32647 5.45452 5.56909 5.61482 5.64600 5.68729 5.86375 5.89932 5.97926 6.15092 6.36743 6.86618 7.10329 7.43426 7.66522 8.93952 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.003859 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.523482 B = 7254.600359 C = 7577.659499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.178 4.178 3 C 0.112 3.888 4 H 0.092 0.908 5 O -0.377 6.377 6 C 0.051 3.949 7 C -0.165 4.165 8 C 0.134 3.866 9 H 0.075 0.925 10 N -0.724 5.724 11 C 0.697 3.303 12 O -0.636 6.636 13 N -0.626 5.626 14 C 0.109 3.891 15 C -0.126 4.126 16 C -0.105 4.105 17 C 0.037 3.963 18 H -0.017 1.017 19 C -0.537 4.537 20 H 0.063 0.937 21 C 0.010 3.990 22 N -0.915 5.915 23 Si 0.957 3.043 24 H -0.268 1.268 25 H -0.290 1.290 26 H -0.266 1.266 27 C 0.143 3.857 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.407 0.593 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.259 0.741 43 H 0.075 0.925 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 3.749 -19.439 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C 0.053 3.947 4 H 0.110 0.890 5 O -0.296 6.296 6 C -0.025 4.025 7 C -0.204 4.204 8 C 0.028 3.972 9 H 0.093 0.907 10 N -0.384 5.384 11 C 0.398 3.602 12 O -0.517 6.517 13 N -0.362 5.362 14 C -0.013 4.013 15 C -0.164 4.164 16 C -0.142 4.142 17 C 0.018 3.982 18 H 0.001 0.999 19 C -0.576 4.576 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.553 5.553 23 Si 0.782 3.218 24 H -0.193 1.193 25 H -0.216 1.216 26 H -0.191 1.191 27 C 0.020 3.980 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.247 0.753 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.075 2.821 -19.246 19.693 hybrid contribution 0.369 -0.075 1.543 1.588 sum -2.706 2.746 -17.703 18.118 Atomic orbital electron populations 1.24130 0.95240 1.03559 0.96746 1.22858 0.96495 0.97380 1.02950 1.21958 0.91733 0.97183 0.83786 0.89046 1.88936 1.30983 1.76906 1.32824 1.23712 0.88182 0.96523 0.94051 1.23535 0.96362 1.02978 0.97524 1.22082 0.94401 0.89149 0.91564 0.90663 1.45080 1.63077 1.23127 1.07117 1.16131 0.79291 0.82936 0.81840 1.90900 1.52080 1.36894 1.71822 1.47681 1.58823 1.16091 1.13573 1.21874 0.93727 0.88962 0.96702 1.21909 0.97065 1.02251 0.95182 1.21499 0.99380 0.97602 0.95740 1.18840 0.92712 0.93306 0.93338 0.99879 1.21499 1.38287 0.98847 0.98966 0.91919 1.25901 0.96034 0.94801 1.02201 1.70100 1.42648 1.04110 1.38468 0.85627 0.78751 0.77399 0.79998 1.19334 1.21578 1.19086 1.21492 0.97454 1.01815 0.77239 0.86422 0.87232 0.86756 0.90498 0.86770 0.90722 0.89742 0.75313 0.90000 0.88259 0.87654 0.93340 0.92294 0.93088 0.93209 0.90619 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 14.32 67.78 0.97 -1.82 16 2 C -0.18 -3.72 8.94 25.65 0.23 -3.49 16 3 C 0.11 2.35 3.58 30.22 0.11 2.46 16 4 H 0.09 1.62 7.27 -2.39 -0.02 1.60 16 5 O -0.38 -8.11 11.17 -148.98 -1.66 -9.78 16 6 C 0.05 0.90 7.72 72.66 0.56 1.46 16 7 C -0.16 -3.85 6.88 31.89 0.22 -3.63 16 8 C 0.13 3.57 3.00 45.98 0.14 3.71 16 9 H 0.08 2.49 7.15 -2.38 -0.02 2.48 16 10 N -0.72 -20.51 5.02 -453.10 -2.27 -22.78 16 11 C 0.70 28.47 8.29 179.06 1.48 29.96 16 12 O -0.64 -33.45 15.44 -4.00 -0.06 -33.51 16 13 N -0.63 -24.85 2.98 -837.73 -2.49 -27.35 16 14 C 0.11 2.95 6.39 86.37 0.55 3.50 16 15 C -0.13 -3.58 6.08 30.67 0.19 -3.40 16 16 C -0.10 -3.98 5.11 30.62 0.16 -3.82 16 17 C 0.04 1.90 2.24 -11.61 -0.03 1.87 16 18 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 19 C -0.54 -29.75 8.56 25.60 0.22 -29.53 16 20 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 21 C 0.01 0.57 5.30 84.65 0.45 1.02 16 22 N -0.91 -56.45 11.39 21.45 0.24 -56.20 16 23 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.14 7.18 5.39 86.22 0.46 7.64 16 28 H 0.12 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.11 1.63 7.85 -2.91 -0.02 1.61 16 30 H 0.11 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.41 8.48 5.78 -92.71 -0.54 7.95 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 1.88 5.64 -2.39 -0.01 1.86 16 38 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 43 H 0.08 4.60 5.10 -2.39 -0.01 4.59 16 44 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -75.44 349.10 1.94 -73.51 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.45 Total: 23.66 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.71 Total: 5.94 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.53 Total: -106.33 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.73 Total: -43.29 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -75.44 1.94 -73.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595642025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.824 kcal (2) G-P(sol) polarization free energy of solvation -75.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds