Wall clock time and date at job start Tue Mar 31 2020 07:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99839 * 2 1 4 4 H 1.08994 * 109.87298 * 359.55674 * 3 2 1 5 5 O 1.43742 * 109.87943 * 238.55031 * 3 2 1 6 6 C 1.44383 * 106.97443 * 213.91683 * 5 3 2 7 7 C 1.54990 * 103.63288 * 39.98179 * 6 5 3 8 8 C 1.54098 * 109.99931 * 120.64529 * 3 2 1 9 9 H 1.08998 * 110.49105 * 2.84633 * 8 3 2 10 10 N 1.46504 * 110.48751 * 240.32974 * 8 3 2 11 11 C 1.34777 * 119.99961 * 155.00115 * 10 8 3 12 12 O 1.21585 * 119.99832 * 354.90853 * 11 10 8 13 13 N 1.34779 * 119.99959 * 174.90554 * 11 10 8 14 14 C 1.46920 * 120.62857 * 5.04782 * 13 11 10 15 15 C 1.53190 * 108.77542 * 233.58158 * 14 13 11 16 16 C 1.53043 * 109.31275 * 305.37000 * 15 14 13 17 17 C 1.53032 * 109.54184 * 61.36147 * 16 15 14 18 18 H 1.09002 * 109.49867 * 58.58655 * 17 16 15 19 19 C 1.50696 * 109.50108 * 178.65189 * 17 16 15 20 20 H 1.08004 * 119.99640 * 5.39822 * 19 17 16 21 21 C 1.37878 * 119.99963 * 185.39098 * 19 17 16 22 22 N 1.31506 * 120.00180 * 355.12337 * 21 19 17 23 23 Si 1.86803 * 119.99660 * 175.12055 * 21 19 17 24 24 H 1.48502 * 109.47230 * 95.00279 * 23 21 19 25 25 H 1.48504 * 109.47248 * 215.00275 * 23 21 19 26 26 H 1.48502 * 109.47404 * 335.00125 * 23 21 19 27 27 C 1.46920 * 120.62893 * 184.76168 * 13 11 10 28 28 H 1.07994 * 119.99842 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.99931 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00455 * 180.02562 * 2 1 3 31 31 H 1.09005 * 110.61689 * 158.56510 * 6 5 3 32 32 H 1.09001 * 110.61368 * 281.39633 * 6 5 3 33 33 H 1.08996 * 110.91079 * 81.25613 * 7 6 5 34 34 H 1.09004 * 110.90745 * 204.86022 * 7 6 5 35 35 H 0.96994 * 119.99682 * 335.00460 * 10 8 3 36 36 H 1.09000 * 109.59150 * 353.37125 * 14 13 11 37 37 H 1.09002 * 109.58894 * 113.65394 * 14 13 11 38 38 H 1.09007 * 109.49572 * 65.31765 * 15 14 13 39 39 H 1.08995 * 109.50211 * 185.41558 * 15 14 13 40 40 H 1.09002 * 109.46215 * 181.38672 * 16 15 14 41 41 H 1.09000 * 109.45768 * 301.34069 * 16 15 14 42 42 H 0.97007 * 119.99659 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.59045 * 246.20431 * 27 13 11 44 44 H 1.09002 * 109.58858 * 6.63456 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3610 2.1385 -0.0079 5 8 2.9186 1.3758 -1.1532 6 6 4.1015 2.1029 -0.7569 7 6 4.3938 1.5746 0.6706 8 6 2.9662 1.3925 1.2458 9 1 2.9023 0.4736 1.8285 10 7 2.5947 2.5466 2.0683 11 6 2.8670 2.5490 3.3883 12 8 3.3362 1.5581 3.9140 13 7 2.6194 3.6498 4.1254 14 6 1.9518 4.8151 3.5296 15 6 2.8132 6.0573 3.7780 16 6 3.0899 6.1898 5.2774 17 6 3.8609 4.9617 5.7662 18 1 4.7947 4.8735 5.2108 19 6 4.1616 5.1084 7.2355 20 1 3.7615 5.9461 7.7875 21 6 4.9475 4.1733 7.8751 22 7 5.3552 3.1037 7.2278 23 14 5.4330 4.4260 9.6612 24 1 4.4784 3.7044 10.5405 25 1 6.8039 3.8988 9.8808 26 1 5.4029 5.8756 9.9821 27 6 3.0063 3.7049 5.5417 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 4.9319 1.8791 -1.4266 32 1 3.9043 3.1747 -0.7367 33 1 4.9209 0.6213 0.6322 34 1 4.9583 2.3066 1.2482 35 1 2.1527 3.3089 1.6628 36 1 1.8346 4.6603 2.4570 37 1 0.9723 4.9494 3.9886 38 1 3.7569 5.9588 3.2413 39 1 2.2846 6.9430 3.4259 40 1 3.6820 7.0866 5.4595 41 1 2.1450 6.2633 5.8158 42 1 5.9084 2.4460 7.6778 43 1 2.1121 3.7520 6.1632 44 1 3.5851 2.8173 5.7972 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595642026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:30 Heat of formation + Delta-G solvation = -50.339237 kcal Electronic energy + Delta-G solvation = -24657.245543 eV Core-core repulsion = 21189.169319 eV Total energy + Delta-G solvation = -3468.076223 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35893 -39.12065 -36.79373 -34.42722 -33.92552 -33.26072 -31.81547 -30.55316 -29.67822 -27.98261 -25.07793 -24.46369 -23.01285 -21.87328 -21.58322 -20.45908 -19.79817 -18.75594 -17.70112 -16.66727 -16.53211 -16.14997 -15.35638 -15.16580 -14.75680 -14.54126 -14.12908 -13.81662 -13.72349 -13.55060 -13.26108 -12.77995 -12.66371 -12.46315 -12.36351 -11.94418 -11.83200 -11.45147 -11.26932 -11.14632 -11.00857 -10.86581 -10.53947 -10.40492 -10.26556 -9.99520 -9.87958 -9.72054 -9.47254 -9.09324 -8.94632 -8.77997 -8.46411 -7.67327 -5.99786 -4.07854 1.97642 3.09278 3.31369 3.38763 3.41353 3.77046 3.88208 4.33771 4.45063 4.50071 4.52909 4.74943 4.93669 5.05300 5.15305 5.22517 5.30149 5.31113 5.46998 5.54486 5.58873 5.63979 5.78928 5.91018 5.97928 6.00781 6.13675 6.29564 6.36768 6.47083 6.55672 6.58560 6.63330 6.78238 6.85370 6.96800 7.03516 7.30598 7.47203 7.72108 7.90361 8.03264 8.40043 8.53668 8.96351 9.20654 9.57856 11.06094 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022513 B = 0.003852 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.442908 B = 7267.935749 C = 7594.818347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.149 4.149 3 C 0.100 3.900 4 H 0.074 0.926 5 O -0.368 6.368 6 C 0.045 3.955 7 C -0.167 4.167 8 C 0.140 3.860 9 H 0.107 0.893 10 N -0.749 5.749 11 C 0.702 3.298 12 O -0.582 6.582 13 N -0.622 5.622 14 C 0.116 3.884 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.040 3.960 18 H 0.031 0.969 19 C -0.522 4.522 20 H 0.058 0.942 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.131 3.869 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.390 0.610 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.263 0.737 43 H 0.040 0.960 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 -0.536 -15.822 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.042 3.958 4 H 0.092 0.908 5 O -0.287 6.287 6 C -0.031 4.031 7 C -0.206 4.206 8 C 0.033 3.967 9 H 0.125 0.875 10 N -0.409 5.409 11 C 0.404 3.596 12 O -0.459 6.459 13 N -0.358 5.358 14 C -0.009 4.009 15 C -0.171 4.171 16 C -0.147 4.147 17 C 0.021 3.979 18 H 0.049 0.951 19 C -0.561 4.561 20 H 0.076 0.924 21 C -0.139 4.139 22 N -0.516 5.516 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C 0.010 3.990 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.226 0.774 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.062 -1.521 -15.574 17.168 hybrid contribution 0.127 0.640 0.957 1.158 sum -6.935 -0.881 -14.618 16.203 Atomic orbital electron populations 1.23868 0.95641 1.02238 0.99213 1.22782 0.95793 0.97524 1.00683 1.22059 0.92267 0.96221 0.85297 0.90786 1.88936 1.30854 1.76497 1.32412 1.23605 0.87942 0.95918 0.95684 1.23621 0.97605 1.03214 0.96139 1.22030 0.92427 0.91126 0.91116 0.87464 1.45379 1.66972 1.20807 1.07693 1.15924 0.79128 0.83986 0.80574 1.90920 1.51027 1.32951 1.70954 1.47810 1.61805 1.12811 1.13379 1.21495 0.95990 0.87021 0.96368 1.21947 0.99562 0.96097 0.99542 1.21617 1.00210 1.00529 0.92391 1.19072 0.93784 0.88866 0.96185 0.95121 1.21071 1.31561 1.09541 0.93926 0.92397 1.25051 0.95772 0.95038 0.98072 1.69926 1.35304 1.09689 1.36636 0.86600 0.77967 0.78317 0.85242 1.20721 1.21174 1.19886 1.22297 0.97782 1.04623 0.74275 0.88427 0.87770 0.86454 0.88757 0.92121 0.89653 0.89220 0.77362 0.92294 0.92077 0.92193 0.92329 0.93004 0.93238 0.92701 0.94207 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 14.32 29.02 0.42 -1.19 16 2 C -0.15 -1.60 8.95 -36.02 -0.32 -1.92 16 3 C 0.10 1.14 3.57 -27.31 -0.10 1.04 16 4 H 0.07 0.77 7.31 -51.93 -0.38 0.39 16 5 O -0.37 -4.45 11.17 -35.23 -0.39 -4.84 16 6 C 0.04 0.47 7.71 38.21 0.29 0.76 16 7 C -0.17 -2.08 6.89 -24.63 -0.17 -2.25 16 8 C 0.14 1.89 3.07 -66.30 -0.20 1.69 16 9 H 0.11 1.67 7.04 -51.93 -0.37 1.31 16 10 N -0.75 -11.05 4.99 -57.08 -0.29 -11.33 16 11 C 0.70 14.09 8.30 -86.92 -0.72 13.37 16 12 O -0.58 -14.37 15.40 5.29 0.08 -14.29 16 13 N -0.62 -12.32 2.97 -178.24 -0.53 -12.84 16 14 C 0.12 1.73 6.43 -3.71 -0.02 1.71 16 15 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 16 C -0.11 -2.14 5.11 -26.69 -0.14 -2.28 16 17 C 0.04 0.98 2.20 -91.43 -0.20 0.78 16 18 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.52 -14.07 8.49 -34.44 -0.29 -14.36 16 20 H 0.06 1.53 7.75 -52.48 -0.41 1.12 16 21 C 0.06 1.77 5.36 -17.82 -0.10 1.67 16 22 N -0.88 -25.64 11.63 55.43 0.64 -25.00 16 23 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.13 3.16 5.48 -3.49 -0.02 3.14 16 28 H 0.10 0.83 7.85 -52.49 -0.41 0.42 16 29 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.26 8.06 -51.93 -0.42 0.85 16 35 H 0.39 4.69 5.80 -40.82 -0.24 4.46 16 36 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.12 3.34 5.41 -51.93 -0.28 3.06 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -31.87 349.63 -8.97 -40.84 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.00 Total: 6.09 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.73 Total: -0.07 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.17 Total: -49.17 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.31 Total: -19.13 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.87 -8.97 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595642026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.504 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds