Wall clock time and date at job start Tue Mar 31 2020 07:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99839 * 2 1 4 4 H 1.08994 * 109.87298 * 359.55674 * 3 2 1 5 5 O 1.43742 * 109.87943 * 238.55031 * 3 2 1 6 6 C 1.44383 * 106.97443 * 213.91683 * 5 3 2 7 7 C 1.54990 * 103.63288 * 39.98179 * 6 5 3 8 8 C 1.54098 * 109.99931 * 120.64529 * 3 2 1 9 9 H 1.08998 * 110.49105 * 2.84633 * 8 3 2 10 10 N 1.46504 * 110.48751 * 240.32974 * 8 3 2 11 11 C 1.34777 * 119.99961 * 155.00115 * 10 8 3 12 12 O 1.21585 * 119.99832 * 354.90853 * 11 10 8 13 13 N 1.34779 * 119.99959 * 174.90554 * 11 10 8 14 14 C 1.46920 * 120.62857 * 5.04782 * 13 11 10 15 15 C 1.53190 * 108.77542 * 233.58158 * 14 13 11 16 16 C 1.53043 * 109.31275 * 305.37000 * 15 14 13 17 17 C 1.53032 * 109.54184 * 61.36147 * 16 15 14 18 18 H 1.09002 * 109.49867 * 58.58655 * 17 16 15 19 19 C 1.50696 * 109.50108 * 178.65189 * 17 16 15 20 20 H 1.08004 * 119.99640 * 5.39822 * 19 17 16 21 21 C 1.37878 * 119.99963 * 185.39098 * 19 17 16 22 22 N 1.31506 * 120.00180 * 355.12337 * 21 19 17 23 23 Si 1.86803 * 119.99660 * 175.12055 * 21 19 17 24 24 H 1.48502 * 109.47230 * 95.00279 * 23 21 19 25 25 H 1.48504 * 109.47248 * 215.00275 * 23 21 19 26 26 H 1.48502 * 109.47404 * 335.00125 * 23 21 19 27 27 C 1.46920 * 120.62893 * 184.76168 * 13 11 10 28 28 H 1.07994 * 119.99842 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.99931 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00455 * 180.02562 * 2 1 3 31 31 H 1.09005 * 110.61689 * 158.56510 * 6 5 3 32 32 H 1.09001 * 110.61368 * 281.39633 * 6 5 3 33 33 H 1.08996 * 110.91079 * 81.25613 * 7 6 5 34 34 H 1.09004 * 110.90745 * 204.86022 * 7 6 5 35 35 H 0.96994 * 119.99682 * 335.00460 * 10 8 3 36 36 H 1.09000 * 109.59150 * 353.37125 * 14 13 11 37 37 H 1.09002 * 109.58894 * 113.65394 * 14 13 11 38 38 H 1.09007 * 109.49572 * 65.31765 * 15 14 13 39 39 H 1.08995 * 109.50211 * 185.41558 * 15 14 13 40 40 H 1.09002 * 109.46215 * 181.38672 * 16 15 14 41 41 H 1.09000 * 109.45768 * 301.34069 * 16 15 14 42 42 H 0.97007 * 119.99659 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.59045 * 246.20431 * 27 13 11 44 44 H 1.09002 * 109.58858 * 6.63456 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3610 2.1385 -0.0079 5 8 2.9186 1.3758 -1.1532 6 6 4.1015 2.1029 -0.7569 7 6 4.3938 1.5746 0.6706 8 6 2.9662 1.3925 1.2458 9 1 2.9023 0.4736 1.8285 10 7 2.5947 2.5466 2.0683 11 6 2.8670 2.5490 3.3883 12 8 3.3362 1.5581 3.9140 13 7 2.6194 3.6498 4.1254 14 6 1.9518 4.8151 3.5296 15 6 2.8132 6.0573 3.7780 16 6 3.0899 6.1898 5.2774 17 6 3.8609 4.9617 5.7662 18 1 4.7947 4.8735 5.2108 19 6 4.1616 5.1084 7.2355 20 1 3.7615 5.9461 7.7875 21 6 4.9475 4.1733 7.8751 22 7 5.3552 3.1037 7.2278 23 14 5.4330 4.4260 9.6612 24 1 4.4784 3.7044 10.5405 25 1 6.8039 3.8988 9.8808 26 1 5.4029 5.8756 9.9821 27 6 3.0063 3.7049 5.5417 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 4.9319 1.8791 -1.4266 32 1 3.9043 3.1747 -0.7367 33 1 4.9209 0.6213 0.6322 34 1 4.9583 2.3066 1.2482 35 1 2.1527 3.3089 1.6628 36 1 1.8346 4.6603 2.4570 37 1 0.9723 4.9494 3.9886 38 1 3.7569 5.9588 3.2413 39 1 2.2846 6.9430 3.4259 40 1 3.6820 7.0866 5.4595 41 1 2.1450 6.2633 5.8158 42 1 5.9084 2.4460 7.6778 43 1 2.1121 3.7520 6.1632 44 1 3.5851 2.8173 5.7972 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595642026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:29 Heat of formation + Delta-G solvation = -71.483552 kcal Electronic energy + Delta-G solvation = -24658.162429 eV Core-core repulsion = 21189.169319 eV Total energy + Delta-G solvation = -3468.993110 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64351 -40.37325 -38.38969 -35.77720 -35.15521 -34.73300 -33.45819 -31.82839 -31.26430 -28.96748 -27.00230 -26.01433 -23.93747 -23.45479 -22.79012 -21.57035 -21.14128 -20.19920 -19.17221 -18.29428 -17.75372 -17.42638 -16.69054 -16.45510 -16.28477 -16.07755 -15.25411 -15.20241 -15.16641 -14.87516 -14.46935 -14.29203 -14.14002 -13.92376 -13.56402 -13.42885 -13.03967 -12.91277 -12.67715 -12.38206 -12.32904 -12.23578 -12.11711 -12.08049 -11.80029 -11.62055 -11.23518 -10.93185 -10.87329 -10.79590 -10.61332 -10.54120 -10.09001 -9.28241 -8.10946 -6.26883 1.20199 1.40705 1.41638 1.52873 1.69092 2.21345 2.42411 2.88505 3.11307 3.20203 3.53004 3.58681 3.85476 4.00270 4.03130 4.16501 4.20547 4.24246 4.28135 4.44365 4.60415 4.68824 4.74650 4.80322 4.82001 4.83868 4.88899 4.96259 5.01618 5.11448 5.26104 5.27997 5.32258 5.45077 5.57339 5.62119 5.63356 5.69525 5.86014 5.88065 5.96132 6.13237 6.36124 6.86929 7.09377 7.43200 7.65128 8.93315 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022513 B = 0.003852 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.442908 B = 7267.935749 C = 7594.818347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.178 4.178 3 C 0.111 3.889 4 H 0.092 0.908 5 O -0.377 6.377 6 C 0.052 3.948 7 C -0.168 4.168 8 C 0.135 3.865 9 H 0.080 0.920 10 N -0.724 5.724 11 C 0.697 3.303 12 O -0.638 6.638 13 N -0.626 5.626 14 C 0.109 3.891 15 C -0.125 4.125 16 C -0.105 4.105 17 C 0.039 3.961 18 H -0.012 1.012 19 C -0.536 4.536 20 H 0.062 0.938 21 C 0.010 3.990 22 N -0.915 5.915 23 Si 0.956 3.044 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.261 1.261 27 C 0.146 3.854 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.407 0.593 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.259 0.741 43 H 0.035 0.965 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 1.399 -17.543 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.197 4.197 3 C 0.053 3.947 4 H 0.110 0.890 5 O -0.296 6.296 6 C -0.024 4.024 7 C -0.207 4.207 8 C 0.028 3.972 9 H 0.098 0.902 10 N -0.384 5.384 11 C 0.399 3.601 12 O -0.519 6.519 13 N -0.362 5.362 14 C -0.013 4.013 15 C -0.163 4.163 16 C -0.143 4.143 17 C 0.020 3.980 18 H 0.007 0.993 19 C -0.575 4.575 20 H 0.080 0.920 21 C -0.189 4.189 22 N -0.554 5.554 23 Si 0.782 3.218 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.185 1.185 27 C 0.023 3.977 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.247 0.753 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.035 0.470 -17.356 19.573 hybrid contribution 0.702 0.025 1.463 1.623 sum -8.334 0.494 -15.893 17.952 Atomic orbital electron populations 1.24126 0.95139 1.03586 0.96627 1.22842 0.96529 0.97246 1.03042 1.21988 0.91808 0.97308 0.83624 0.89003 1.88936 1.31301 1.76893 1.32496 1.23680 0.88109 0.96469 0.94163 1.23579 0.96680 1.02871 0.97583 1.22132 0.94044 0.89447 0.91540 0.90170 1.45071 1.65929 1.21736 1.05657 1.16134 0.78744 0.83279 0.81971 1.90882 1.53437 1.35155 1.72439 1.47690 1.62053 1.14441 1.11977 1.21876 0.96048 0.84667 0.98679 1.21902 0.99945 0.98216 0.96230 1.21506 0.99580 0.97650 0.95523 1.18994 0.92798 0.91541 0.94669 0.99334 1.21530 1.31173 1.09263 0.95485 0.91954 1.25892 0.95972 0.94716 1.02346 1.70123 1.36223 1.10652 1.38376 0.85573 0.77346 0.78761 0.80167 1.20280 1.21318 1.18524 1.21677 0.96674 1.02311 0.77068 0.87190 0.86332 0.86799 0.86874 0.90588 0.89753 0.91143 0.75288 0.88233 0.90153 0.93090 0.87714 0.93009 0.92447 0.93221 0.94675 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 14.32 67.78 0.97 -1.59 16 2 C -0.18 -3.59 8.95 25.65 0.23 -3.36 16 3 C 0.11 2.33 3.57 30.22 0.11 2.43 16 4 H 0.09 1.60 7.31 -2.39 -0.02 1.58 16 5 O -0.38 -8.27 11.17 -148.98 -1.66 -9.94 16 6 C 0.05 0.97 7.71 72.66 0.56 1.53 16 7 C -0.17 -4.19 6.89 31.96 0.22 -3.97 16 8 C 0.13 3.62 3.07 46.04 0.14 3.76 16 9 H 0.08 2.63 7.04 -2.39 -0.02 2.61 16 10 N -0.72 -20.62 4.99 -452.78 -2.26 -22.88 16 11 C 0.70 28.49 8.30 179.05 1.49 29.98 16 12 O -0.64 -33.39 15.40 -3.99 -0.06 -33.45 16 13 N -0.63 -24.77 2.97 -836.08 -2.48 -27.25 16 14 C 0.11 2.93 6.43 86.36 0.56 3.49 16 15 C -0.12 -3.48 6.08 30.67 0.19 -3.29 16 16 C -0.10 -3.94 5.11 30.62 0.16 -3.79 16 17 C 0.04 1.98 2.20 -11.32 -0.02 1.95 16 18 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 19 C -0.54 -29.50 8.49 25.60 0.22 -29.28 16 20 H 0.06 3.29 7.75 -2.91 -0.02 3.27 16 21 C 0.01 0.58 5.36 84.66 0.45 1.04 16 22 N -0.92 -56.20 11.63 21.45 0.25 -55.95 16 23 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 26 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 27 C 0.15 7.29 5.48 86.51 0.47 7.76 16 28 H 0.11 1.50 7.85 -2.91 -0.02 1.47 16 29 H 0.12 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 2.03 8.06 -2.38 -0.02 2.01 16 35 H 0.41 8.54 5.80 -92.71 -0.54 8.00 16 36 H 0.10 1.86 5.57 -2.39 -0.01 1.85 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.26 15.33 8.31 -92.70 -0.77 14.55 16 43 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.07 4.13 5.41 -2.39 -0.01 4.12 16 Total: -1.00 -74.95 349.63 1.99 -72.96 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.45 Total: 23.40 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 5.73 Total: 6.67 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -4.49 Total: -106.08 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.73 Total: -43.38 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -74.95 1.99 -72.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595642026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.475 kcal (2) G-P(sol) polarization free energy of solvation -74.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds