Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47000 * 2 1 4 4 C 1.52999 * 109.46779 * 119.99473 * 2 1 3 5 5 C 1.53006 * 109.47297 * 68.95982 * 4 2 1 6 6 C 1.53002 * 110.65671 * 173.66780 * 5 4 2 7 7 N 1.47308 * 110.59829 * 296.58737 * 5 4 2 8 8 C 1.34535 * 106.61890 * 118.52363 * 7 5 4 9 9 O 1.21540 * 123.77102 * 179.97438 * 8 7 5 10 10 N 1.33790 * 112.45698 * 359.97438 * 8 7 5 11 11 C 1.46497 * 124.17457 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47489 * 265.20695 * 11 10 8 13 13 C 1.50699 * 115.55015 * 270.57245 * 12 11 10 14 14 H 1.08007 * 120.00020 * 147.77707 * 13 12 11 15 15 C 1.37876 * 120.00452 * 327.77186 * 13 12 11 16 16 N 1.31520 * 119.99450 * 333.92175 * 15 13 12 17 17 Si 1.86796 * 120.00401 * 153.91519 * 15 13 12 18 18 H 1.48505 * 109.47014 * 60.00378 * 17 15 13 19 19 H 1.48492 * 109.47542 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47116 * 300.00880 * 17 15 13 21 21 C 1.53001 * 117.49734 * 124.86362 * 12 11 10 22 22 C 1.52999 * 60.00003 * 252.51145 * 21 12 11 23 23 C 1.34770 * 111.64644 * 0.02562 * 10 8 7 24 24 O 1.21235 * 127.15635 * 180.02562 * 23 10 8 25 25 H 1.09006 * 109.46682 * 172.31088 * 1 2 3 26 26 H 1.08995 * 109.47056 * 292.31471 * 1 2 3 27 27 H 1.08997 * 109.46649 * 52.31707 * 1 2 3 28 28 H 1.09002 * 109.47239 * 239.99452 * 2 1 3 29 29 H 1.09002 * 109.46971 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47130 * 299.99182 * 3 2 1 31 31 H 1.08993 * 109.47646 * 59.99877 * 3 2 1 32 32 H 1.08999 * 109.47662 * 308.96362 * 4 2 1 33 33 H 1.09006 * 109.47180 * 188.95988 * 4 2 1 34 34 H 1.09002 * 109.46674 * 177.90062 * 6 5 4 35 35 H 1.08996 * 109.47433 * 297.90165 * 6 5 4 36 36 H 1.09001 * 109.46629 * 57.90874 * 6 5 4 37 37 H 0.96994 * 126.69314 * 298.25719 * 7 5 4 38 38 H 1.08995 * 109.47358 * 25.21250 * 11 10 8 39 39 H 1.09011 * 109.46823 * 145.20978 * 11 10 8 40 40 H 0.97004 * 119.99039 * 185.02037 * 16 15 13 41 41 H 1.09000 * 117.50223 * 0.02562 * 21 12 11 42 42 H 1.09004 * 117.49864 * 145.02369 * 21 12 11 43 43 H 1.09006 * 117.50180 * 252.51287 * 22 21 12 44 44 H 1.08999 * 117.51610 * 107.48071 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.7217 -2.2139 1.1422 6 6 2.3560 -2.9855 2.3012 7 7 0.2652 -2.4322 1.1097 8 6 -0.0097 -3.0184 -0.0696 9 8 -1.1286 -3.3380 -0.4206 10 7 1.0861 -3.2101 -0.8128 11 6 1.0818 -3.8281 -2.1410 12 6 1.3813 -5.3227 -2.0092 13 6 2.8391 -5.7007 -2.0629 14 1 3.1985 -6.5481 -1.4978 15 6 3.7142 -4.9649 -2.8334 16 7 3.2716 -4.3019 -3.8795 17 14 5.5283 -4.9094 -2.3916 18 1 6.0886 -6.2843 -2.4265 19 1 6.2500 -4.0555 -3.3688 20 1 5.6886 -4.3442 -1.0277 21 6 0.3744 -6.3012 -2.6171 22 6 0.4706 -6.1479 -1.0978 23 6 2.1945 -2.7655 -0.1882 24 8 3.3327 -2.7990 -0.6042 25 1 -0.3633 -1.0185 -0.1375 26 1 -0.3633 0.3902 0.9507 27 1 -0.3632 0.6282 -0.8133 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.5518 -0.3081 2.1320 33 1 3.1182 -0.5846 1.3330 34 1 2.0866 -4.0391 2.2267 35 1 3.4402 -2.8836 2.2553 36 1 1.9928 -2.5836 3.2471 37 1 -0.3710 -2.2021 1.8047 38 1 0.1032 -3.6929 -2.6016 39 1 1.8441 -3.3583 -2.7628 40 1 3.8965 -3.8441 -4.4634 41 1 -0.5012 -5.8803 -3.1113 42 1 0.7664 -7.2187 -3.0562 43 1 0.9259 -6.9645 -0.5373 44 1 -0.3416 -5.6259 -0.5920 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596019127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = -15.048438 kcal Electronic energy + Delta-G solvation = -26390.225056 eV Core-core repulsion = 22923.679157 eV Total energy + Delta-G solvation = -3466.545899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.24925 -38.01598 -37.33829 -36.18427 -35.07245 -33.58266 -32.18303 -30.91304 -27.13899 -27.04757 -26.74029 -25.43496 -23.52004 -21.45793 -21.08745 -20.67710 -19.75236 -18.87660 -17.35718 -16.82494 -16.05775 -15.67742 -15.37771 -14.73519 -14.61154 -14.39210 -14.09799 -13.96203 -13.61492 -13.42839 -12.97325 -12.82771 -12.55531 -12.38025 -12.28727 -12.00204 -11.76543 -11.59546 -11.33156 -10.97440 -10.88443 -10.77183 -10.66245 -10.61418 -10.38740 -10.33409 -10.10560 -9.90506 -9.45641 -9.03028 -8.98935 -8.73792 -8.53822 -7.99683 -6.11972 -3.99840 2.30444 2.86571 3.36345 3.43485 3.55435 3.59317 3.69754 4.31546 4.46475 4.54883 4.75487 4.92402 5.00414 5.13538 5.23517 5.50199 5.58938 5.59120 5.62935 5.66571 5.70474 5.76366 5.85433 5.88034 6.00266 6.07577 6.12377 6.18251 6.31984 6.32326 6.36446 6.44599 6.50569 6.76799 6.80401 7.02914 7.11649 7.14445 7.36873 7.41742 7.81647 7.95505 8.16549 8.44606 8.71068 8.88644 9.55497 10.93371 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014922 B = 0.007786 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.977178 B = 3595.495045 C = 4409.478140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C -0.142 4.142 4 C -0.104 4.104 5 C 0.116 3.884 6 C -0.145 4.145 7 N -0.729 5.729 8 C 0.704 3.296 9 O -0.556 6.556 10 N -0.557 5.557 11 C 0.143 3.857 12 C 0.039 3.961 13 C -0.500 4.500 14 H 0.059 0.941 15 C 0.094 3.906 16 N -0.868 5.868 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.264 1.264 21 C -0.194 4.194 22 C -0.209 4.209 23 C 0.530 3.470 24 O -0.441 6.441 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.430 0.570 38 H 0.064 0.936 39 H 0.136 0.864 40 H 0.265 0.735 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 9.892 11.275 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.123 4.123 3 C -0.199 4.199 4 C -0.142 4.142 5 C 0.025 3.975 6 C -0.203 4.203 7 N -0.394 5.394 8 C 0.407 3.593 9 O -0.431 6.431 10 N -0.301 5.301 11 C 0.024 3.976 12 C 0.037 3.963 13 C -0.536 4.536 14 H 0.078 0.922 15 C -0.110 4.110 16 N -0.504 5.504 17 Si 0.713 3.287 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.232 4.232 22 C -0.247 4.247 23 C 0.314 3.686 24 O -0.308 6.308 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.273 0.727 38 H 0.082 0.918 39 H 0.153 0.847 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.859 9.830 10.578 14.721 hybrid contribution 0.522 -0.052 0.520 0.739 sum -2.337 9.778 11.098 14.975 Atomic orbital electron populations 1.22219 0.94811 1.03219 1.01223 1.21201 0.96461 0.96587 0.98054 1.21785 1.01006 0.95524 1.01589 1.21851 1.02603 0.90761 0.99022 1.21570 0.81777 0.97592 0.96585 1.21944 1.01880 1.00674 0.95800 1.45813 1.08163 1.65875 1.19592 1.15884 0.84831 0.77622 0.80993 1.90953 1.21382 1.56389 1.74415 1.46547 1.07587 1.55500 1.20427 1.21772 1.03217 0.94607 0.78026 1.19212 0.91848 0.87767 0.97438 1.20300 0.89774 1.14207 1.29299 0.92239 1.24777 0.98888 0.94107 0.93261 1.69893 1.35392 1.33572 1.11517 0.86752 0.84793 0.77419 0.79703 1.20996 1.21531 1.18904 1.22989 1.02475 1.03790 0.93976 1.22894 1.04028 1.04598 0.93171 1.20390 0.85334 0.77205 0.85638 1.90802 1.18148 1.51851 1.69955 0.91203 0.92875 0.93155 0.91015 0.92570 0.92646 0.92800 0.90223 0.89579 0.91150 0.90095 0.91058 0.72706 0.91770 0.84716 0.92548 0.91594 0.90292 0.91038 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.42 37.16 0.31 -1.64 16 2 C -0.10 -1.32 2.70 -90.62 -0.24 -1.57 16 3 C -0.14 -1.49 9.18 37.16 0.34 -1.15 16 4 C -0.10 -1.17 4.26 -26.73 -0.11 -1.29 16 5 C 0.12 1.60 1.12 -132.09 -0.15 1.46 16 6 C -0.14 -1.72 8.99 37.16 0.33 -1.39 16 7 N -0.73 -9.97 3.97 -52.93 -0.21 -10.18 16 8 C 0.70 13.11 5.51 -88.01 -0.48 12.62 16 9 O -0.56 -11.85 16.40 5.33 0.09 -11.77 16 10 N -0.56 -11.48 2.45 -120.73 -0.30 -11.77 16 11 C 0.14 3.41 5.47 -4.05 -0.02 3.39 16 12 C 0.04 0.97 2.04 -155.66 -0.32 0.66 16 13 C -0.50 -13.74 8.97 -34.44 -0.31 -14.04 16 14 H 0.06 1.67 7.94 -52.48 -0.42 1.25 16 15 C 0.09 2.57 4.44 -17.82 -0.08 2.49 16 16 N -0.87 -23.99 11.26 55.43 0.62 -23.37 16 17 Si 0.89 21.90 29.13 -169.99 -4.95 16.94 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.26 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.19 -4.61 9.88 -26.73 -0.26 -4.87 16 22 C -0.21 -4.86 9.65 -26.73 -0.26 -5.12 16 23 C 0.53 10.32 5.23 -10.55 -0.06 10.26 16 24 O -0.44 -10.04 16.88 5.60 0.09 -9.95 16 25 H 0.07 1.02 3.66 -51.93 -0.19 0.83 16 26 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.07 1.15 6.68 -51.93 -0.35 0.80 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.43 4.52 8.96 -40.82 -0.37 4.15 16 38 H 0.06 1.52 7.49 -51.93 -0.39 1.13 16 39 H 0.14 3.53 5.26 -51.92 -0.27 3.26 16 40 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 41 H 0.07 1.50 8.03 -51.93 -0.42 1.08 16 42 H 0.08 1.88 8.14 -51.93 -0.42 1.45 16 43 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 44 H 0.07 1.70 6.43 -51.93 -0.33 1.37 16 LS Contribution 347.57 15.07 5.24 5.24 Total: -1.00 -30.81 347.57 -7.65 -38.46 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.93 Total: 6.57 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.31 Total: -0.18 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.12 Total: -45.32 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.18 Total: -21.71 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.95 Total: 16.94 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.81 -7.65 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596019127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.416 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds