Wall clock time and date at job start Tue Mar 31 2020 06:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47338 * 2 1 4 4 C 1.52997 * 109.47188 * 239.99890 * 2 1 3 5 5 C 1.53009 * 109.47163 * 279.67438 * 4 2 1 6 6 C 1.52999 * 110.53258 * 175.41419 * 5 4 2 7 7 N 1.47315 * 110.59507 * 52.58634 * 5 4 2 8 8 C 1.34865 * 106.43815 * 241.51967 * 7 5 4 9 9 O 1.21541 * 123.72756 * 179.97438 * 8 7 5 10 10 N 1.33791 * 112.49972 * 359.86762 * 8 7 5 11 11 C 1.46503 * 124.17395 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47026 * 275.39963 * 11 10 8 13 13 C 1.50693 * 115.54999 * 174.14633 * 12 11 10 14 14 H 1.08003 * 120.00373 * 145.07024 * 13 12 11 15 15 C 1.37884 * 120.00275 * 325.07226 * 13 12 11 16 16 N 1.31514 * 119.99671 * 0.94514 * 15 13 12 17 17 Si 1.86801 * 120.00155 * 180.94558 * 15 13 12 18 18 H 1.48506 * 109.47040 * 89.99717 * 17 15 13 19 19 H 1.48494 * 109.46950 * 209.99966 * 17 15 13 20 20 H 1.48502 * 109.47039 * 330.00126 * 17 15 13 21 21 C 1.53002 * 117.49745 * 28.48117 * 12 11 10 22 22 C 1.52998 * 117.50146 * 319.82588 * 12 11 10 23 23 C 1.34763 * 111.64533 * 0.08777 * 10 8 7 24 24 O 1.21232 * 127.15669 * 180.02562 * 23 10 8 25 25 H 1.09002 * 109.46924 * 308.07277 * 1 2 3 26 26 H 1.09001 * 109.47163 * 188.06915 * 1 2 3 27 27 H 1.08999 * 109.46308 * 68.07125 * 1 2 3 28 28 H 1.09000 * 109.46632 * 120.00062 * 2 1 3 29 29 H 1.09006 * 109.46616 * 59.99944 * 3 2 1 30 30 H 1.08996 * 109.46786 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46812 * 300.00164 * 3 2 1 32 32 H 1.08993 * 109.47376 * 39.67534 * 4 2 1 33 33 H 1.08996 * 109.47099 * 159.68171 * 4 2 1 34 34 H 1.08989 * 109.47201 * 55.12820 * 6 5 4 35 35 H 1.09006 * 109.46773 * 175.12328 * 6 5 4 36 36 H 1.09002 * 109.47569 * 295.12072 * 6 5 4 37 37 H 0.97000 * 126.68671 * 61.44438 * 7 5 4 38 38 H 1.08995 * 109.47748 * 35.40164 * 11 10 8 39 39 H 1.09001 * 109.46654 * 155.40751 * 11 10 8 40 40 H 0.97002 * 119.99393 * 185.00749 * 16 15 13 41 41 H 1.09001 * 117.49984 * 359.97438 * 21 12 11 42 42 H 1.09001 * 117.49815 * 145.01499 * 21 12 11 43 43 H 1.08999 * 117.49606 * 214.98040 * 22 12 11 44 44 H 1.08996 * 117.49605 * 359.96586 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.9815 -2.2336 -1.0246 6 6 2.3788 -2.9812 -2.2990 7 7 0.6362 -2.6403 -0.5831 8 6 0.7846 -3.1840 0.6421 9 8 -0.1365 -3.6264 1.3002 10 7 2.0585 -3.1843 1.0512 11 6 2.5084 -3.7138 2.3409 12 6 2.3457 -2.6395 3.4181 13 6 2.6397 -3.0829 4.8279 14 1 3.0960 -2.3966 5.5259 15 6 2.3261 -4.3650 5.2270 16 7 1.7875 -5.2066 4.3719 17 14 2.6663 -4.9063 6.9822 18 1 1.4796 -4.6191 7.8276 19 1 2.9489 -6.3640 7.0046 20 1 3.8407 -4.1662 7.5097 21 6 1.2380 -1.6027 3.2200 22 6 2.7040 -1.2007 3.0407 23 6 2.8762 -2.6362 0.1309 24 8 4.0777 -2.4949 0.2104 25 1 -0.3633 0.6337 0.8090 26 1 -0.3633 -1.0175 0.1443 27 1 -0.3632 0.3838 -0.9534 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.4155 -0.4562 -2.1022 33 1 3.0697 -0.4229 -1.4461 34 1 3.3600 -2.6405 -2.6291 35 1 2.4152 -4.0516 -2.0959 36 1 1.6441 -2.7844 -3.0798 37 1 -0.1921 -2.5357 -1.0771 38 1 1.9102 -4.5860 2.6044 39 1 3.5576 -4.0008 2.2697 40 1 1.5002 -6.0837 4.6704 41 1 0.6256 -1.6858 2.3222 42 1 0.7222 -1.2412 4.1096 43 1 3.1522 -0.5748 3.8124 44 1 3.0562 -1.0196 2.0253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596019128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:29 Heat of formation + Delta-G solvation = -15.911611 kcal Electronic energy + Delta-G solvation = -26443.514899 eV Core-core repulsion = 22976.931570 eV Total energy + Delta-G solvation = -3466.583329 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.30583 -38.05800 -37.33920 -36.39435 -35.08087 -33.39112 -32.22891 -30.91481 -27.20345 -27.01750 -26.75759 -25.52549 -23.61288 -21.66505 -21.05357 -20.44097 -19.88175 -18.84256 -17.34124 -17.00901 -16.15245 -15.56597 -15.42663 -15.00270 -14.54921 -14.25622 -14.08797 -14.02777 -13.74009 -13.34027 -12.98973 -12.76356 -12.53556 -12.34387 -12.27292 -12.02925 -11.94185 -11.54115 -11.51283 -11.00743 -10.91431 -10.74616 -10.70373 -10.63012 -10.37584 -10.17879 -10.08393 -9.96131 -9.50169 -9.10519 -8.99358 -8.86632 -8.50746 -8.11482 -6.03570 -4.17475 2.13137 2.86614 3.26939 3.33577 3.36989 3.53534 3.69003 4.26915 4.33828 4.50652 4.74462 4.96867 5.00162 5.13190 5.24589 5.43221 5.51989 5.55269 5.60681 5.71735 5.73410 5.76935 5.87338 5.93758 5.97855 6.06194 6.09859 6.27926 6.33059 6.37318 6.41907 6.45155 6.55256 6.75676 6.86788 7.05722 7.12967 7.21963 7.35597 7.57073 7.77116 7.96282 8.06992 8.35637 8.74663 8.83489 9.45776 10.90465 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.005884 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.923931 B = 4757.530010 C = 5076.134006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.141 4.141 4 C -0.106 4.106 5 C 0.115 3.885 6 C -0.143 4.143 7 N -0.731 5.731 8 C 0.700 3.300 9 O -0.525 6.525 10 N -0.562 5.562 11 C 0.130 3.870 12 C 0.044 3.956 13 C -0.481 4.481 14 H 0.065 0.935 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.906 3.094 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.198 4.198 22 C -0.216 4.216 23 C 0.524 3.476 24 O -0.477 6.477 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.431 0.569 38 H 0.165 0.835 39 H 0.072 0.928 40 H 0.267 0.733 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 7.011 -14.154 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.136 4.136 3 C -0.199 4.199 4 C -0.145 4.145 5 C 0.024 3.976 6 C -0.202 4.202 7 N -0.398 5.398 8 C 0.401 3.599 9 O -0.396 6.396 10 N -0.306 5.306 11 C 0.012 3.988 12 C 0.043 3.957 13 C -0.519 4.519 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.521 5.521 17 Si 0.733 3.267 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.236 4.236 22 C -0.253 4.253 23 C 0.310 3.690 24 O -0.348 6.348 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.275 0.725 38 H 0.182 0.818 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.054 6.536 -13.611 15.136 hybrid contribution -0.293 0.000 0.617 0.683 sum -1.347 6.535 -12.994 14.607 Atomic orbital electron populations 1.22095 0.94864 1.02916 1.01024 1.21428 0.96637 0.96766 0.98737 1.21787 1.00875 0.95719 1.01490 1.21917 1.03095 0.90316 0.99156 1.21528 0.83322 0.97295 0.95473 1.21937 1.02839 1.00638 0.94757 1.45916 1.08970 1.65913 1.19007 1.15962 0.83592 0.78749 0.81566 1.91042 1.41265 1.49616 1.57725 1.46944 1.07850 1.55371 1.20429 1.22597 1.01564 1.00198 0.74404 1.19302 0.96555 0.85161 0.94670 1.20565 1.40359 0.97026 0.93922 0.91666 1.25045 0.94341 0.96009 0.98167 1.69309 1.41393 1.08188 1.33249 0.86352 0.78735 0.77808 0.83789 1.20484 1.20961 1.19737 1.23047 0.90446 1.09279 1.00845 1.23029 0.99253 1.03448 0.99606 1.20673 0.87694 0.76446 0.84227 1.90734 1.11963 1.52922 1.79181 0.92879 0.91471 0.93231 0.89275 0.92530 0.92734 0.93023 0.90222 0.89765 0.90209 0.91543 0.90801 0.72452 0.81812 0.90982 0.92210 0.91226 0.90710 0.90694 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.80 37.16 0.33 -1.58 16 2 C -0.12 -1.57 2.60 -90.62 -0.24 -1.81 16 3 C -0.14 -1.66 9.09 37.16 0.34 -1.32 16 4 C -0.11 -1.21 4.27 -26.73 -0.11 -1.32 16 5 C 0.11 1.52 1.11 -132.09 -0.15 1.37 16 6 C -0.14 -1.46 8.98 37.16 0.33 -1.12 16 7 N -0.73 -10.11 3.57 -52.84 -0.19 -10.30 16 8 C 0.70 13.61 5.82 -87.72 -0.51 13.10 16 9 O -0.52 -12.29 16.83 5.33 0.09 -12.20 16 10 N -0.56 -11.55 1.83 -120.63 -0.22 -11.77 16 11 C 0.13 3.19 5.23 -4.04 -0.02 3.17 16 12 C 0.04 1.13 2.44 -155.66 -0.38 0.75 16 13 C -0.48 -13.17 9.07 -34.44 -0.31 -13.48 16 14 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 15 C 0.07 1.78 5.38 -17.82 -0.10 1.69 16 16 N -0.88 -24.36 10.17 55.43 0.56 -23.79 16 17 Si 0.91 20.91 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 C -0.20 -4.69 9.05 -26.70 -0.24 -4.94 16 22 C -0.22 -4.91 8.94 -26.70 -0.24 -5.15 16 23 C 0.52 9.54 4.41 -10.56 -0.05 9.49 16 24 O -0.48 -9.72 17.39 5.60 0.10 -9.62 16 25 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.07 0.93 4.79 -51.93 -0.25 0.68 16 27 H 0.05 0.50 7.96 -51.93 -0.41 0.08 16 28 H 0.09 1.51 2.94 -51.93 -0.15 1.36 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 33 H 0.08 0.94 7.97 -51.93 -0.41 0.53 16 34 H 0.08 0.75 8.14 -51.94 -0.42 0.33 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.43 4.68 8.40 -40.82 -0.34 4.34 16 38 H 0.17 4.46 5.01 -51.93 -0.26 4.20 16 39 H 0.07 1.80 7.90 -51.93 -0.41 1.39 16 40 H 0.27 7.02 8.32 -40.82 -0.34 6.68 16 41 H 0.07 1.60 4.70 -51.93 -0.24 1.35 16 42 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 44 H 0.07 1.48 4.36 -51.93 -0.23 1.26 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -30.60 337.09 -7.41 -38.02 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.47 Total: 9.85 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.35 Total: -1.14 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.15 Total: -45.86 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.19 Total: -21.83 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.60 -7.41 -38.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596019128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.105 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds