Wall clock time and date at job start Tue Mar 31 2020 06:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47338 * 2 1 4 4 C 1.52997 * 109.47188 * 239.99890 * 2 1 3 5 5 C 1.53009 * 109.47163 * 279.67438 * 4 2 1 6 6 C 1.52999 * 110.53258 * 175.41419 * 5 4 2 7 7 N 1.47315 * 110.59507 * 52.58634 * 5 4 2 8 8 C 1.34865 * 106.43815 * 241.51967 * 7 5 4 9 9 O 1.21541 * 123.72756 * 179.97438 * 8 7 5 10 10 N 1.33791 * 112.49972 * 359.86762 * 8 7 5 11 11 C 1.46503 * 124.17395 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47026 * 275.39963 * 11 10 8 13 13 C 1.50693 * 115.54999 * 174.14633 * 12 11 10 14 14 H 1.08003 * 120.00373 * 145.07024 * 13 12 11 15 15 C 1.37884 * 120.00275 * 325.07226 * 13 12 11 16 16 N 1.31514 * 119.99671 * 0.94514 * 15 13 12 17 17 Si 1.86801 * 120.00155 * 180.94558 * 15 13 12 18 18 H 1.48506 * 109.47040 * 89.99717 * 17 15 13 19 19 H 1.48494 * 109.46950 * 209.99966 * 17 15 13 20 20 H 1.48502 * 109.47039 * 330.00126 * 17 15 13 21 21 C 1.53002 * 117.49745 * 28.48117 * 12 11 10 22 22 C 1.52998 * 117.50146 * 319.82588 * 12 11 10 23 23 C 1.34763 * 111.64533 * 0.08777 * 10 8 7 24 24 O 1.21232 * 127.15669 * 180.02562 * 23 10 8 25 25 H 1.09002 * 109.46924 * 308.07277 * 1 2 3 26 26 H 1.09001 * 109.47163 * 188.06915 * 1 2 3 27 27 H 1.08999 * 109.46308 * 68.07125 * 1 2 3 28 28 H 1.09000 * 109.46632 * 120.00062 * 2 1 3 29 29 H 1.09006 * 109.46616 * 59.99944 * 3 2 1 30 30 H 1.08996 * 109.46786 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46812 * 300.00164 * 3 2 1 32 32 H 1.08993 * 109.47376 * 39.67534 * 4 2 1 33 33 H 1.08996 * 109.47099 * 159.68171 * 4 2 1 34 34 H 1.08989 * 109.47201 * 55.12820 * 6 5 4 35 35 H 1.09006 * 109.46773 * 175.12328 * 6 5 4 36 36 H 1.09002 * 109.47569 * 295.12072 * 6 5 4 37 37 H 0.97000 * 126.68671 * 61.44438 * 7 5 4 38 38 H 1.08995 * 109.47748 * 35.40164 * 11 10 8 39 39 H 1.09001 * 109.46654 * 155.40751 * 11 10 8 40 40 H 0.97002 * 119.99393 * 185.00749 * 16 15 13 41 41 H 1.09001 * 117.49984 * 359.97438 * 21 12 11 42 42 H 1.09001 * 117.49815 * 145.01499 * 21 12 11 43 43 H 1.08999 * 117.49606 * 214.98040 * 22 12 11 44 44 H 1.08996 * 117.49605 * 359.96586 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.9815 -2.2336 -1.0246 6 6 2.3788 -2.9812 -2.2990 7 7 0.6362 -2.6403 -0.5831 8 6 0.7846 -3.1840 0.6421 9 8 -0.1365 -3.6264 1.3002 10 7 2.0585 -3.1843 1.0512 11 6 2.5084 -3.7138 2.3409 12 6 2.3457 -2.6395 3.4181 13 6 2.6397 -3.0829 4.8279 14 1 3.0960 -2.3966 5.5259 15 6 2.3261 -4.3650 5.2270 16 7 1.7875 -5.2066 4.3719 17 14 2.6663 -4.9063 6.9822 18 1 1.4796 -4.6191 7.8276 19 1 2.9489 -6.3640 7.0046 20 1 3.8407 -4.1662 7.5097 21 6 1.2380 -1.6027 3.2200 22 6 2.7040 -1.2007 3.0407 23 6 2.8762 -2.6362 0.1309 24 8 4.0777 -2.4949 0.2104 25 1 -0.3633 0.6337 0.8090 26 1 -0.3633 -1.0175 0.1443 27 1 -0.3632 0.3838 -0.9534 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.4155 -0.4562 -2.1022 33 1 3.0697 -0.4229 -1.4461 34 1 3.3600 -2.6405 -2.6291 35 1 2.4152 -4.0516 -2.0959 36 1 1.6441 -2.7844 -3.0798 37 1 -0.1921 -2.5357 -1.0771 38 1 1.9102 -4.5860 2.6044 39 1 3.5576 -4.0008 2.2697 40 1 1.5002 -6.0837 4.6704 41 1 0.6256 -1.6858 2.3222 42 1 0.7222 -1.2412 4.1096 43 1 3.1522 -0.5748 3.8124 44 1 3.0562 -1.0196 2.0253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596019128.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:28 Heat of formation + Delta-G solvation = -34.751364 kcal Electronic energy + Delta-G solvation = -26444.331852 eV Core-core repulsion = 22976.931570 eV Total energy + Delta-G solvation = -3467.400282 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.73641 -39.59775 -38.89989 -37.93481 -36.48924 -34.83023 -34.23763 -32.04944 -28.89073 -27.96331 -27.79288 -27.50571 -25.04671 -23.24249 -22.79305 -21.70794 -21.18258 -20.53625 -18.78865 -18.72495 -17.87560 -17.12929 -16.76266 -16.72775 -16.06038 -15.73403 -15.60056 -15.21093 -15.12797 -14.76802 -14.36870 -14.04178 -13.90095 -13.59381 -13.50180 -13.40821 -13.10323 -12.93499 -12.87826 -12.62696 -12.48028 -12.41230 -12.15510 -11.97694 -11.86259 -11.74423 -11.60078 -11.46754 -11.09179 -10.96576 -10.82510 -10.42204 -10.14213 -10.07739 -8.07103 -6.30532 0.69076 1.38262 1.42751 1.45697 1.53998 2.14854 2.29103 2.38934 2.93924 3.01181 3.46966 3.54267 3.76403 4.03730 4.16355 4.17938 4.22885 4.32703 4.48330 4.54307 4.62810 4.70151 4.74920 4.75988 4.82992 4.84255 4.87542 4.93210 4.96187 5.03947 5.10256 5.13214 5.17541 5.27615 5.35942 5.41352 5.47767 5.52261 5.53747 5.93148 5.94847 6.27443 6.36274 6.52387 6.72116 7.29035 7.35908 8.84312 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.005884 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.923931 B = 4757.530010 C = 5076.134006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.137 4.137 4 C -0.100 4.100 5 C 0.127 3.873 6 C -0.140 4.140 7 N -0.700 5.700 8 C 0.698 3.302 9 O -0.574 6.574 10 N -0.573 5.573 11 C 0.144 3.856 12 C 0.014 3.986 13 C -0.510 4.510 14 H 0.059 0.941 15 C 0.022 3.978 16 N -0.904 5.904 17 Si 0.970 3.030 18 H -0.276 1.276 19 H -0.277 1.277 20 H -0.268 1.268 21 C -0.189 4.189 22 C -0.192 4.192 23 C 0.514 3.486 24 O -0.505 6.505 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.115 0.885 37 H 0.449 0.551 38 H 0.138 0.862 39 H 0.052 0.948 40 H 0.267 0.733 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 8.409 -16.741 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.194 4.194 4 C -0.138 4.138 5 C 0.037 3.963 6 C -0.198 4.198 7 N -0.368 5.368 8 C 0.399 3.601 9 O -0.450 6.450 10 N -0.316 5.316 11 C 0.024 3.976 12 C 0.013 3.987 13 C -0.547 4.547 14 H 0.077 0.923 15 C -0.177 4.177 16 N -0.543 5.543 17 Si 0.794 3.206 18 H -0.202 1.202 19 H -0.203 1.203 20 H -0.192 1.192 21 C -0.227 4.227 22 C -0.229 4.229 23 C 0.302 3.698 24 O -0.377 6.377 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.298 0.702 38 H 0.155 0.845 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.349 7.971 -16.271 18.169 hybrid contribution -0.177 -0.396 1.380 1.446 sum -1.526 7.575 -14.891 16.777 Atomic orbital electron populations 1.22062 0.94286 1.01734 1.02429 1.21454 0.97159 0.97634 0.98112 1.21746 1.00588 0.94751 1.02350 1.22003 1.04557 0.87669 0.99575 1.21729 0.80926 0.99383 0.94247 1.22022 1.04832 0.99347 0.93591 1.45729 1.10353 1.63887 1.16786 1.16067 0.82511 0.78736 0.82782 1.91004 1.42422 1.52009 1.59540 1.46838 1.09069 1.55937 1.19803 1.21943 0.99710 0.99449 0.76504 1.19430 0.98342 0.86481 0.94481 1.20839 1.41191 0.97628 0.95076 0.92307 1.25818 0.94002 0.95891 1.02012 1.69519 1.41733 1.08291 1.34717 0.85369 0.78619 0.77530 0.79054 1.20156 1.20268 1.19200 1.22916 0.90771 1.08425 1.00564 1.22948 0.98308 1.01434 1.00164 1.21604 0.87784 0.75354 0.85014 1.90707 1.13285 1.53818 1.79927 0.94280 0.93184 0.89745 0.93332 0.93653 0.93140 0.90220 0.85710 0.88982 0.88941 0.92789 0.86689 0.70234 0.84521 0.92920 0.92253 0.90522 0.91856 0.90621 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.80 71.98 0.63 -2.67 16 2 C -0.13 -3.01 2.60 -10.79 -0.03 -3.04 16 3 C -0.14 -2.83 9.09 71.98 0.65 -2.18 16 4 C -0.10 -1.83 4.27 30.60 0.13 -1.70 16 5 C 0.13 2.98 1.11 2.98 0.00 2.99 16 6 C -0.14 -2.26 8.98 71.98 0.65 -1.61 16 7 N -0.70 -17.82 3.57 -439.32 -1.57 -19.39 16 8 C 0.70 27.27 5.82 179.33 1.04 28.31 16 9 O -0.57 -27.69 16.83 -3.85 -0.06 -27.76 16 10 N -0.57 -24.06 1.83 -772.82 -1.41 -25.47 16 11 C 0.14 7.43 5.23 86.38 0.45 7.88 16 12 C 0.01 0.73 2.44 -52.93 -0.13 0.60 16 13 C -0.51 -28.95 9.07 25.60 0.23 -28.71 16 14 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 15 C 0.02 1.23 5.38 84.66 0.46 1.69 16 16 N -0.90 -51.83 10.17 21.45 0.22 -51.61 16 17 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C -0.19 -9.23 9.05 30.62 0.28 -8.95 16 22 C -0.19 -8.90 8.94 30.62 0.27 -8.63 16 23 C 0.51 18.47 4.41 87.94 0.39 18.86 16 24 O -0.50 -20.59 17.39 -2.88 -0.05 -20.64 16 25 H 0.04 0.97 8.13 -2.39 -0.02 0.95 16 26 H 0.05 1.28 4.79 -2.39 -0.01 1.27 16 27 H 0.08 1.28 7.96 -2.39 -0.02 1.26 16 28 H 0.05 1.59 2.94 -2.39 -0.01 1.58 16 29 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.12 1.28 7.85 -2.39 -0.02 1.26 16 33 H 0.09 1.65 7.97 -2.39 -0.02 1.63 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.45 8.27 8.40 -92.71 -0.78 7.49 16 38 H 0.14 7.89 5.01 -2.39 -0.01 7.88 16 39 H 0.05 2.81 7.90 -2.39 -0.02 2.79 16 40 H 0.27 14.53 8.32 -92.71 -0.77 13.76 16 41 H 0.08 3.62 4.70 -2.39 -0.01 3.61 16 42 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 44 H 0.08 3.53 4.36 -2.39 -0.01 3.52 16 Total: -1.00 -71.23 337.09 4.43 -66.80 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.25 Total: 29.37 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 5.03 Total: 2.83 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -2.76 Total: -96.47 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -0.11 Total: -48.39 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -71.23 4.43 -66.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596019128.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.049 kcal (2) G-P(sol) polarization free energy of solvation -71.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds