Wall clock time and date at job start Tue Mar 31 2020 06:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46970 * 2 1 4 4 C 1.53006 * 110.53214 * 181.99963 * 3 2 1 5 5 C 1.53000 * 109.46865 * 185.00497 * 4 3 2 6 6 C 1.53001 * 109.47280 * 305.00192 * 4 3 2 7 7 N 1.47300 * 110.60182 * 304.83041 * 3 2 1 8 8 C 1.34529 * 106.61834 * 118.52556 * 7 3 2 9 9 O 1.21543 * 123.76975 * 180.02562 * 8 7 3 10 10 N 1.33788 * 112.46012 * 0.02562 * 8 7 3 11 11 C 1.46495 * 124.18204 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47352 * 86.31664 * 11 10 8 13 13 C 1.50704 * 115.54831 * 279.41736 * 12 11 10 14 14 H 1.08001 * 119.99633 * 115.15950 * 13 12 11 15 15 C 1.37881 * 120.00026 * 295.15935 * 13 12 11 16 16 N 1.31508 * 119.99529 * 353.26302 * 15 13 12 17 17 Si 1.86793 * 119.99960 * 173.26476 * 15 13 12 18 18 H 1.48501 * 109.47313 * 65.00594 * 17 15 13 19 19 H 1.48506 * 109.46971 * 185.00579 * 17 15 13 20 20 H 1.48499 * 109.47494 * 305.00643 * 17 15 13 21 21 C 1.52995 * 117.50353 * 133.70408 * 12 11 10 22 22 C 1.52991 * 60.00037 * 252.51541 * 21 12 11 23 23 C 1.34771 * 111.64277 * 359.97438 * 10 8 7 24 24 O 1.21237 * 127.15690 * 180.02562 * 23 10 8 25 25 H 1.09007 * 109.46629 * 183.60105 * 1 2 3 26 26 H 1.09005 * 109.46497 * 303.59338 * 1 2 3 27 27 H 1.08989 * 109.47122 * 63.59933 * 1 2 3 28 28 H 1.09000 * 109.46464 * 240.00204 * 2 1 3 29 29 H 1.08997 * 109.47233 * 120.00848 * 2 1 3 30 30 H 1.08997 * 109.46796 * 65.00623 * 4 3 2 31 31 H 1.08990 * 109.47458 * 59.99770 * 5 4 3 32 32 H 1.09000 * 109.46993 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46715 * 299.99817 * 5 4 3 34 34 H 1.08997 * 109.47261 * 300.00423 * 6 4 3 35 35 H 1.09002 * 109.47184 * 59.99890 * 6 4 3 36 36 H 1.09000 * 109.46984 * 179.97438 * 6 4 3 37 37 H 0.97003 * 126.69773 * 298.56238 * 7 3 2 38 38 H 1.08999 * 109.47578 * 206.31613 * 11 10 8 39 39 H 1.09002 * 109.47413 * 326.31803 * 11 10 8 40 40 H 0.97006 * 119.99822 * 185.02297 * 16 15 13 41 41 H 1.09006 * 117.49200 * 0.02562 * 21 12 11 42 42 H 1.08998 * 117.50296 * 145.02030 * 21 12 11 43 43 H 1.08999 * 117.49544 * 252.50794 * 22 21 12 44 44 H 1.09002 * 117.52506 * 107.48313 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5690 1.4711 -0.0500 5 6 4.0563 2.9159 0.0767 6 6 4.1327 0.6397 1.1041 7 7 1.4703 2.1936 -1.1318 8 6 0.7537 3.2018 -0.6027 9 8 0.1462 4.0195 -1.2657 10 7 0.7843 3.2037 0.7348 11 6 0.0927 4.1865 1.5725 12 6 -1.3461 3.7267 1.8161 13 6 -2.3164 4.0075 0.6977 14 1 -2.7746 3.1892 0.1622 15 6 -2.6190 5.3091 0.3581 16 7 -2.1667 6.3022 1.0921 17 14 -3.6712 5.6618 -1.1444 18 1 -5.0371 5.1196 -0.9306 19 1 -3.7494 7.1290 -1.3607 20 1 -3.0639 5.0174 -2.3365 21 6 -1.8783 3.7998 3.2486 22 6 -1.5504 2.4428 2.6228 23 6 1.5292 2.1890 1.2164 24 8 1.7455 1.9275 2.3803 25 1 -0.3633 -1.0257 0.0646 26 1 -0.3632 0.5686 0.8561 27 1 -0.3633 0.4569 -0.9204 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9093 1.0547 -0.9980 31 1 3.7159 3.3324 1.0246 32 1 5.1456 2.9364 0.0406 33 1 3.6547 3.5082 -0.7455 34 1 3.7923 1.0562 2.0521 35 1 3.7855 -0.3896 1.0139 36 1 5.2219 0.6598 1.0682 37 1 1.5883 1.9991 -2.0747 38 1 0.6109 4.2793 2.5270 39 1 0.0848 5.1527 1.0679 40 1 -2.4387 7.2127 0.8968 41 1 -1.2034 4.1760 4.0176 42 1 -2.9304 4.0514 3.3825 43 1 -2.3868 1.8015 2.3449 44 1 -0.6598 1.9255 2.9797 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596257734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:55 Heat of formation + Delta-G solvation = -27.168121 kcal Electronic energy + Delta-G solvation = -26399.467392 eV Core-core repulsion = 22932.395944 eV Total energy + Delta-G solvation = -3467.071448 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.23531 -38.09667 -37.33189 -36.14656 -34.67761 -33.21654 -31.98310 -31.88589 -27.26546 -27.20718 -26.27530 -25.26895 -22.90753 -21.69989 -21.42896 -20.99440 -19.35281 -18.93206 -17.47153 -16.68916 -15.97303 -15.58162 -15.29324 -14.70714 -14.60395 -14.47640 -14.25577 -13.90985 -13.60162 -13.44022 -13.17241 -12.88490 -12.79060 -12.26098 -12.10692 -11.73312 -11.62209 -11.44954 -11.27068 -11.15570 -11.01890 -10.91391 -10.79352 -10.72928 -10.42984 -10.29665 -10.02157 -9.84294 -9.42515 -9.00091 -8.86644 -8.72083 -8.41881 -8.09935 -5.95380 -3.97802 2.18273 2.88325 3.40525 3.44936 3.53683 3.56801 3.81476 4.23336 4.47783 4.53024 4.67106 4.95660 5.16520 5.24262 5.27111 5.29703 5.48002 5.53795 5.56754 5.65542 5.72254 5.83140 5.84621 5.91766 5.98672 6.08067 6.14015 6.16909 6.23941 6.34549 6.37817 6.40355 6.46201 6.68872 6.74355 7.01289 7.07690 7.25819 7.38801 7.47334 7.84656 7.97412 7.99892 8.46058 8.87541 8.97578 9.67554 11.13748 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.006421 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.503372 B = 4359.389602 C = 4692.877302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C 0.123 3.877 4 C -0.084 4.084 5 C -0.155 4.155 6 C -0.156 4.156 7 N -0.733 5.733 8 C 0.700 3.300 9 O -0.512 6.512 10 N -0.552 5.552 11 C 0.157 3.843 12 C 0.036 3.964 13 C -0.481 4.481 14 H 0.054 0.946 15 C 0.083 3.917 16 N -0.884 5.884 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.272 1.272 21 C -0.164 4.164 22 C -0.208 4.208 23 C 0.534 3.466 24 O -0.482 6.482 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.430 0.570 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.260 0.740 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.292 -11.149 -2.459 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.153 4.153 3 C 0.032 3.968 4 C -0.103 4.103 5 C -0.212 4.212 6 C -0.214 4.214 7 N -0.399 5.399 8 C 0.401 3.599 9 O -0.382 6.382 10 N -0.296 5.296 11 C 0.037 3.963 12 C 0.035 3.965 13 C -0.519 4.519 14 H 0.072 0.928 15 C -0.120 4.120 16 N -0.521 5.521 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.197 1.197 21 C -0.203 4.203 22 C -0.246 4.246 23 C 0.321 3.679 24 O -0.354 6.354 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.273 0.727 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.040 -10.482 -2.143 16.107 hybrid contribution -0.641 0.176 -1.205 1.376 sum 11.399 -10.305 -3.348 15.727 Atomic orbital electron populations 1.21848 0.94360 1.02095 1.03451 1.21762 0.97328 0.92674 1.03552 1.21553 0.95129 0.94058 0.86058 1.21245 0.90911 0.97472 1.00706 1.21915 1.01375 0.95397 1.02510 1.21997 1.00562 0.99823 0.98976 1.45623 1.54853 1.31132 1.08244 1.15859 0.79662 0.82178 0.82196 1.91058 1.44249 1.40334 1.62529 1.46443 1.46116 1.29204 1.07790 1.21479 0.91909 0.90870 0.92021 1.19114 0.91825 0.94313 0.91292 1.20209 1.24784 0.91758 1.15109 0.92826 1.24804 0.95347 0.96048 0.95821 1.69905 1.43918 0.99446 1.38855 0.86676 0.80016 0.76996 0.84472 1.20818 1.21429 1.19715 1.22714 1.00721 0.98860 0.97969 1.22920 1.01474 0.91579 1.08604 1.20486 0.77449 0.80402 0.89579 1.90692 1.58402 1.68551 1.17794 0.92215 0.91823 0.91994 0.90464 0.89614 0.89720 0.92536 0.91862 0.92100 0.90658 0.92034 0.92304 0.72711 0.91888 0.87411 0.92985 0.91713 0.89999 0.90771 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.39 37.16 0.35 -1.85 16 2 C -0.11 -1.30 4.79 -26.73 -0.13 -1.43 16 3 C 0.12 1.63 0.59 -132.10 -0.08 1.55 16 4 C -0.08 -0.89 2.59 -90.62 -0.23 -1.12 16 5 C -0.15 -1.81 8.69 37.16 0.32 -1.49 16 6 C -0.16 -1.55 8.55 37.16 0.32 -1.23 16 7 N -0.73 -10.54 4.50 -52.94 -0.24 -10.78 16 8 C 0.70 13.99 8.50 -88.02 -0.75 13.24 16 9 O -0.51 -12.54 17.18 5.33 0.09 -12.45 16 10 N -0.55 -11.13 2.56 -120.73 -0.31 -11.43 16 11 C 0.16 3.65 5.48 -4.04 -0.02 3.63 16 12 C 0.04 0.88 1.50 -155.66 -0.23 0.65 16 13 C -0.48 -13.30 8.48 -34.44 -0.29 -13.60 16 14 H 0.05 1.52 7.82 -52.49 -0.41 1.11 16 15 C 0.08 2.33 5.26 -17.82 -0.09 2.23 16 16 N -0.88 -25.26 12.45 55.43 0.69 -24.57 16 17 Si 0.89 22.50 29.55 -169.99 -5.02 17.48 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.27 -7.06 7.11 56.52 0.40 -6.65 16 21 C -0.16 -3.85 9.88 -26.74 -0.26 -4.12 16 22 C -0.21 -4.65 9.60 -26.74 -0.26 -4.91 16 23 C 0.53 9.31 3.76 -10.55 -0.04 9.27 16 24 O -0.48 -9.09 15.00 5.59 0.08 -9.00 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.08 6.84 -51.93 -0.36 0.72 16 27 H 0.06 0.91 7.66 -51.94 -0.40 0.51 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.93 6.57 -51.93 -0.34 0.59 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.78 7.07 -51.93 -0.37 0.42 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.76 7.72 -51.93 -0.40 0.36 16 34 H 0.07 0.93 6.28 -51.93 -0.33 0.60 16 35 H 0.06 0.53 6.48 -51.93 -0.34 0.20 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.43 4.94 8.96 -40.82 -0.37 4.57 16 38 H 0.06 1.40 7.73 -51.93 -0.40 0.99 16 39 H 0.11 2.82 6.96 -51.93 -0.36 2.46 16 40 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 41 H 0.06 1.43 8.08 -51.93 -0.42 1.01 16 42 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 43 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 44 H 0.07 1.55 6.95 -51.93 -0.36 1.19 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -31.46 350.09 -7.77 -39.23 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.94 Total: 5.43 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.40 Total: 0.83 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.14 Total: -46.78 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.18 Total: -21.45 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.46 -7.77 -39.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596257734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.058 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds