Wall clock time and date at job start Tue Mar 31 2020 06:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46970 * 2 1 4 4 C 1.53006 * 110.53214 * 181.99963 * 3 2 1 5 5 C 1.53000 * 109.46865 * 185.00497 * 4 3 2 6 6 C 1.53001 * 109.47280 * 305.00192 * 4 3 2 7 7 N 1.47300 * 110.60182 * 304.83041 * 3 2 1 8 8 C 1.34529 * 106.61834 * 118.52556 * 7 3 2 9 9 O 1.21543 * 123.76975 * 180.02562 * 8 7 3 10 10 N 1.33788 * 112.46012 * 0.02562 * 8 7 3 11 11 C 1.46495 * 124.18204 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47352 * 86.31664 * 11 10 8 13 13 C 1.50704 * 115.54831 * 279.41736 * 12 11 10 14 14 H 1.08001 * 119.99633 * 115.15950 * 13 12 11 15 15 C 1.37881 * 120.00026 * 295.15935 * 13 12 11 16 16 N 1.31508 * 119.99529 * 353.26302 * 15 13 12 17 17 Si 1.86793 * 119.99960 * 173.26476 * 15 13 12 18 18 H 1.48501 * 109.47313 * 65.00594 * 17 15 13 19 19 H 1.48506 * 109.46971 * 185.00579 * 17 15 13 20 20 H 1.48499 * 109.47494 * 305.00643 * 17 15 13 21 21 C 1.52995 * 117.50353 * 133.70408 * 12 11 10 22 22 C 1.52991 * 60.00037 * 252.51541 * 21 12 11 23 23 C 1.34771 * 111.64277 * 359.97438 * 10 8 7 24 24 O 1.21237 * 127.15690 * 180.02562 * 23 10 8 25 25 H 1.09007 * 109.46629 * 183.60105 * 1 2 3 26 26 H 1.09005 * 109.46497 * 303.59338 * 1 2 3 27 27 H 1.08989 * 109.47122 * 63.59933 * 1 2 3 28 28 H 1.09000 * 109.46464 * 240.00204 * 2 1 3 29 29 H 1.08997 * 109.47233 * 120.00848 * 2 1 3 30 30 H 1.08997 * 109.46796 * 65.00623 * 4 3 2 31 31 H 1.08990 * 109.47458 * 59.99770 * 5 4 3 32 32 H 1.09000 * 109.46993 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46715 * 299.99817 * 5 4 3 34 34 H 1.08997 * 109.47261 * 300.00423 * 6 4 3 35 35 H 1.09002 * 109.47184 * 59.99890 * 6 4 3 36 36 H 1.09000 * 109.46984 * 179.97438 * 6 4 3 37 37 H 0.97003 * 126.69773 * 298.56238 * 7 3 2 38 38 H 1.08999 * 109.47578 * 206.31613 * 11 10 8 39 39 H 1.09002 * 109.47413 * 326.31803 * 11 10 8 40 40 H 0.97006 * 119.99822 * 185.02297 * 16 15 13 41 41 H 1.09006 * 117.49200 * 0.02562 * 21 12 11 42 42 H 1.08998 * 117.50296 * 145.02030 * 21 12 11 43 43 H 1.08999 * 117.49544 * 252.50794 * 22 21 12 44 44 H 1.09002 * 117.52506 * 107.48313 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5690 1.4711 -0.0500 5 6 4.0563 2.9159 0.0767 6 6 4.1327 0.6397 1.1041 7 7 1.4703 2.1936 -1.1318 8 6 0.7537 3.2018 -0.6027 9 8 0.1462 4.0195 -1.2657 10 7 0.7843 3.2037 0.7348 11 6 0.0927 4.1865 1.5725 12 6 -1.3461 3.7267 1.8161 13 6 -2.3164 4.0075 0.6977 14 1 -2.7746 3.1892 0.1622 15 6 -2.6190 5.3091 0.3581 16 7 -2.1667 6.3022 1.0921 17 14 -3.6712 5.6618 -1.1444 18 1 -5.0371 5.1196 -0.9306 19 1 -3.7494 7.1290 -1.3607 20 1 -3.0639 5.0174 -2.3365 21 6 -1.8783 3.7998 3.2486 22 6 -1.5504 2.4428 2.6228 23 6 1.5292 2.1890 1.2164 24 8 1.7455 1.9275 2.3803 25 1 -0.3633 -1.0257 0.0646 26 1 -0.3632 0.5686 0.8561 27 1 -0.3633 0.4569 -0.9204 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9093 1.0547 -0.9980 31 1 3.7159 3.3324 1.0246 32 1 5.1456 2.9364 0.0406 33 1 3.6547 3.5082 -0.7455 34 1 3.7923 1.0562 2.0521 35 1 3.7855 -0.3896 1.0139 36 1 5.2219 0.6598 1.0682 37 1 1.5883 1.9991 -2.0747 38 1 0.6109 4.2793 2.5270 39 1 0.0848 5.1527 1.0679 40 1 -2.4387 7.2127 0.8968 41 1 -1.2034 4.1760 4.0176 42 1 -2.9304 4.0514 3.3825 43 1 -2.3868 1.8015 2.3449 44 1 -0.6598 1.9255 2.9797 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596257734.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:54 Heat of formation + Delta-G solvation = -46.810825 kcal Electronic energy + Delta-G solvation = -26400.319164 eV Core-core repulsion = 22932.395944 eV Total energy + Delta-G solvation = -3467.923220 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.62515 -39.59331 -38.91954 -37.72422 -36.19283 -34.33736 -34.04387 -33.16181 -28.90373 -28.14861 -27.57641 -27.26097 -24.26262 -23.12269 -22.81067 -22.55556 -20.91341 -20.49562 -18.94852 -18.22287 -17.74874 -16.96555 -16.66279 -16.59402 -16.26350 -15.75681 -15.65563 -15.29154 -15.08827 -14.79123 -14.61459 -14.35308 -13.84193 -13.71645 -13.29380 -13.18511 -12.99338 -12.92649 -12.80041 -12.65904 -12.49103 -12.40969 -12.15002 -12.14361 -11.98234 -11.86653 -11.69483 -11.47167 -10.93321 -10.79835 -10.65242 -10.38531 -10.17971 -10.08600 -8.11017 -6.16755 0.77955 1.34257 1.40659 1.42630 1.47514 2.25693 2.34700 2.43513 3.02097 3.18254 3.41329 3.49683 3.69414 4.06913 4.10898 4.25132 4.26549 4.30221 4.35877 4.50723 4.54183 4.64013 4.65477 4.73469 4.79666 4.83286 4.87484 4.93124 4.98302 5.04757 5.10535 5.11236 5.15853 5.19355 5.29649 5.35312 5.48711 5.53070 5.55038 5.78423 6.01511 6.30991 6.41970 6.58641 6.80596 7.38635 7.49621 8.97518 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.006421 C = 0.005965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.503372 B = 4359.389602 C = 4692.877302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.109 4.109 3 C 0.131 3.869 4 C -0.077 4.077 5 C -0.156 4.156 6 C -0.154 4.154 7 N -0.707 5.707 8 C 0.697 3.303 9 O -0.569 6.569 10 N -0.563 5.563 11 C 0.170 3.830 12 C 0.014 3.986 13 C -0.487 4.487 14 H 0.037 0.963 15 C 0.043 3.957 16 N -0.905 5.905 17 Si 0.936 3.064 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.284 1.284 21 C -0.165 4.165 22 C -0.181 4.181 23 C 0.528 3.472 24 O -0.498 6.498 25 H 0.082 0.918 26 H 0.024 0.976 27 H 0.047 0.953 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.025 0.975 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.446 0.554 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.260 0.740 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.138 -13.870 -3.367 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.147 4.147 3 C 0.040 3.960 4 C -0.096 4.096 5 C -0.213 4.213 6 C -0.211 4.211 7 N -0.373 5.373 8 C 0.397 3.603 9 O -0.443 6.443 10 N -0.306 5.306 11 C 0.048 3.952 12 C 0.013 3.987 13 C -0.525 4.525 14 H 0.056 0.944 15 C -0.157 4.157 16 N -0.543 5.543 17 Si 0.763 3.237 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.204 4.204 22 C -0.218 4.218 23 C 0.317 3.683 24 O -0.371 6.371 25 H 0.101 0.899 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.139 0.861 29 H 0.118 0.882 30 H 0.143 0.857 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.293 0.707 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.920 -13.266 -3.052 19.470 hybrid contribution -1.163 0.970 -0.876 1.750 sum 12.758 -12.295 -3.929 18.148 Atomic orbital electron populations 1.21846 0.96364 1.02695 1.00926 1.21866 0.95384 0.91085 1.06351 1.21830 0.97087 0.94295 0.82752 1.21360 0.88072 0.97013 1.03193 1.21940 1.03034 0.96040 1.00304 1.21993 1.01929 1.00333 0.96873 1.45463 1.53042 1.29263 1.09482 1.16045 0.79677 0.82626 0.81925 1.91011 1.46986 1.42772 1.63531 1.46415 1.46603 1.29636 1.07964 1.20989 0.91690 0.90337 0.92155 1.19125 0.92090 0.96400 0.91089 1.20329 1.25093 0.91324 1.15741 0.94442 1.25349 0.96585 0.96120 0.97687 1.69983 1.44864 0.99479 1.39956 0.85948 0.79241 0.76978 0.81491 1.19581 1.20779 1.21014 1.22688 1.00245 0.99805 0.97639 1.22801 1.01580 0.90743 1.06662 1.21252 0.76494 0.79761 0.90780 1.90676 1.58686 1.68774 1.18931 0.89912 0.95644 0.93386 0.86078 0.88247 0.85681 0.95543 0.89315 0.93352 0.93587 0.90076 0.90156 0.70710 0.91491 0.90980 0.93107 0.90479 0.91175 0.90658 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 9.39 71.98 0.68 -3.39 16 2 C -0.11 -2.02 4.79 30.59 0.15 -1.88 16 3 C 0.13 3.11 0.59 2.99 0.00 3.11 16 4 C -0.08 -1.33 2.59 -10.79 -0.03 -1.36 16 5 C -0.16 -3.33 8.69 71.98 0.63 -2.71 16 6 C -0.15 -2.41 8.55 71.98 0.62 -1.80 16 7 N -0.71 -19.18 4.50 -439.83 -1.98 -21.16 16 8 C 0.70 28.24 8.50 179.44 1.52 29.77 16 9 O -0.57 -28.93 17.18 -3.85 -0.07 -28.99 16 10 N -0.56 -23.15 2.56 -773.12 -1.98 -25.13 16 11 C 0.17 8.21 5.48 86.38 0.47 8.68 16 12 C 0.01 0.72 1.50 -52.93 -0.08 0.64 16 13 C -0.49 -27.77 8.48 25.60 0.22 -27.55 16 14 H 0.04 2.20 7.82 -2.91 -0.02 2.17 16 15 C 0.04 2.50 5.26 84.66 0.45 2.94 16 16 N -0.90 -53.28 12.45 21.45 0.27 -53.01 16 17 Si 0.94 47.19 29.55 68.60 2.03 49.22 16 18 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 20 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 21 C -0.17 -7.87 9.88 30.59 0.30 -7.57 16 22 C -0.18 -8.10 9.60 30.59 0.29 -7.80 16 23 C 0.53 18.10 3.76 87.94 0.33 18.43 16 24 O -0.50 -18.50 15.00 -2.90 -0.04 -18.55 16 25 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.02 0.82 6.84 -2.38 -0.02 0.81 16 27 H 0.05 1.33 7.66 -2.39 -0.02 1.31 16 28 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.69 6.57 -2.39 -0.02 1.67 16 30 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.03 0.71 7.07 -2.39 -0.02 0.69 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.14 7.72 -2.39 -0.02 1.13 16 34 H 0.04 1.02 6.28 -2.39 -0.02 1.01 16 35 H 0.08 0.97 6.48 -2.39 -0.02 0.96 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.45 9.12 8.96 -92.71 -0.83 8.29 16 38 H 0.07 3.09 7.73 -2.39 -0.02 3.07 16 39 H 0.07 3.99 6.96 -2.39 -0.02 3.97 16 40 H 0.26 14.75 8.32 -92.70 -0.77 13.98 16 41 H 0.08 3.43 8.08 -2.38 -0.02 3.41 16 42 H 0.07 3.47 8.14 -2.39 -0.02 3.45 16 43 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.08 3.48 6.95 -2.39 -0.02 3.47 16 Total: -1.00 -72.24 350.09 3.94 -68.30 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.17 Total: 19.79 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.55 Total: 9.53 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -3.70 Total: -99.30 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.11 Total: -47.54 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -72.24 3.94 -68.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596257734.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.492 kcal (2) G-P(sol) polarization free energy of solvation -72.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds