Wall clock time and date at job start Tue Mar 31 2020 06:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46774 * 2 1 4 4 C 1.53005 * 110.53252 * 182.12934 * 3 2 1 5 5 C 1.53004 * 109.47085 * 179.80646 * 4 3 2 6 6 C 1.53002 * 109.46797 * 299.80062 * 4 3 2 7 7 N 1.47311 * 110.60279 * 59.29899 * 3 2 1 8 8 C 1.34522 * 106.61712 * 241.31804 * 7 3 2 9 9 O 1.21544 * 123.77007 * 180.02562 * 8 7 3 10 10 N 1.33787 * 112.46130 * 0.26606 * 8 7 3 11 11 C 1.46505 * 124.17954 * 179.70012 * 10 8 7 12 12 C 1.52989 * 109.47452 * 85.51725 * 11 10 8 13 13 C 1.50702 * 115.55250 * 281.13224 * 12 11 10 14 14 H 1.08006 * 120.00086 * 145.24382 * 13 12 11 15 15 C 1.37871 * 119.99713 * 325.24778 * 13 12 11 16 16 N 1.31517 * 119.99793 * 166.17040 * 15 13 12 17 17 Si 1.86797 * 120.00362 * 346.17593 * 15 13 12 18 18 H 1.48501 * 109.47037 * 95.40139 * 17 15 13 19 19 H 1.48498 * 109.47330 * 215.40018 * 17 15 13 20 20 H 1.48505 * 109.46847 * 335.40140 * 17 15 13 21 21 C 1.52999 * 117.49852 * 135.42563 * 12 11 10 22 22 C 1.53002 * 60.00380 * 252.50973 * 21 12 11 23 23 C 1.34766 * 111.64326 * 359.53430 * 10 8 7 24 24 O 1.21239 * 127.16112 * 180.14348 * 23 10 8 25 25 H 1.09000 * 109.46844 * 60.00170 * 1 2 3 26 26 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47228 * 300.00449 * 1 2 3 28 28 H 1.08999 * 109.47228 * 239.99551 * 2 1 3 29 29 H 1.09000 * 109.46844 * 119.99830 * 2 1 3 30 30 H 1.08996 * 109.47023 * 59.80089 * 4 3 2 31 31 H 1.08989 * 109.47071 * 62.12939 * 5 4 3 32 32 H 1.09006 * 109.46671 * 182.12981 * 5 4 3 33 33 H 1.08997 * 109.46595 * 302.12585 * 5 4 3 34 34 H 1.09003 * 109.46894 * 60.00170 * 6 4 3 35 35 H 1.08999 * 109.47036 * 179.97438 * 6 4 3 36 36 H 1.08996 * 109.47356 * 299.99823 * 6 4 3 37 37 H 0.97000 * 126.68630 * 61.33541 * 7 3 2 38 38 H 1.09004 * 109.46770 * 205.52050 * 11 10 8 39 39 H 1.08999 * 109.46685 * 325.51218 * 11 10 8 40 40 H 0.96998 * 120.00181 * 185.00382 * 16 15 13 41 41 H 1.08997 * 117.50167 * 359.97438 * 21 12 11 42 42 H 1.09005 * 117.50066 * 145.02463 * 21 12 11 43 43 H 1.08997 * 117.50004 * 252.51620 * 22 21 12 44 44 H 1.08993 * 117.49701 * 107.48559 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5688 1.4712 -0.0532 5 6 4.0518 2.9231 -0.0571 6 6 4.1354 0.7486 1.1706 7 7 1.5490 2.1658 1.1856 8 6 0.8018 3.1878 0.7307 9 8 0.2429 3.9900 1.4528 10 7 0.7383 3.2194 -0.6053 11 6 -0.0106 4.2197 -1.3702 12 6 0.8595 5.4611 -1.5756 13 6 0.9546 6.3912 -0.3937 14 1 1.8751 6.9202 -0.1954 15 6 -0.1335 6.5665 0.4347 16 7 0.0172 7.1505 1.6034 17 14 -1.8217 5.9746 -0.1027 18 1 -2.0728 4.6217 0.4558 19 1 -2.8576 6.9153 0.3943 20 1 -1.8767 5.9160 -1.5856 21 6 0.8781 6.0877 -2.9713 22 6 2.0980 5.3170 -2.4626 23 6 1.4513 2.2197 -1.1606 24 8 1.5885 1.9869 -2.3425 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9102 0.9723 -0.9602 31 1 3.7427 3.4112 0.8671 32 1 5.1390 2.9440 -0.1331 33 1 3.6178 3.4480 -0.9080 34 1 3.7913 -0.2857 1.1733 35 1 5.2245 0.7687 1.1325 36 1 3.7940 1.2475 2.0775 37 1 1.7295 1.9479 2.1134 38 1 -0.2858 3.8043 -2.3397 39 1 -0.9126 4.4945 -0.8234 40 1 -0.7321 7.2092 2.2166 41 1 0.2708 5.6152 -3.7433 42 1 0.9590 7.1729 -3.0349 43 1 2.9813 5.8950 -2.1912 44 1 2.2927 4.3377 -2.8996 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596257735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:58 Heat of formation + Delta-G solvation = -3.838279 kcal Electronic energy + Delta-G solvation = -26741.124735 eV Core-core repulsion = 23275.064945 eV Total energy + Delta-G solvation = -3466.059790 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.30126 -38.06890 -37.65757 -36.37863 -34.65897 -33.12089 -32.14247 -31.97301 -28.02489 -27.08169 -26.64069 -25.20161 -23.02077 -21.95973 -21.38026 -20.61332 -19.80841 -19.01645 -17.47230 -16.79378 -16.35068 -15.72135 -15.44911 -15.14892 -14.69925 -14.63853 -14.26610 -13.93936 -13.63742 -13.47214 -13.18071 -12.90913 -12.82217 -12.33440 -12.27421 -12.15173 -12.03746 -11.79723 -11.28401 -11.17959 -11.04740 -10.92188 -10.84358 -10.59789 -10.52740 -10.07087 -9.88762 -9.71333 -9.34682 -9.25979 -8.97247 -8.92539 -8.56513 -8.17721 -5.98632 -3.92412 2.11875 2.77192 3.32343 3.38579 3.44361 3.55779 3.78801 4.22550 4.39841 4.50692 4.65602 4.89327 4.97955 5.13109 5.18190 5.19645 5.38935 5.48823 5.53708 5.55503 5.67098 5.75667 5.79128 5.84890 5.85842 5.90456 5.93255 6.03828 6.08631 6.13400 6.15561 6.23550 6.27864 6.48516 6.56577 6.62655 6.75771 6.95887 7.20204 7.29249 7.71113 7.86620 7.88743 8.60268 8.86942 9.01055 9.66086 11.12634 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.007599 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.440571 B = 3683.982558 C = 3907.591122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 C 0.126 3.874 4 C -0.086 4.086 5 C -0.155 4.155 6 C -0.145 4.145 7 N -0.728 5.728 8 C 0.695 3.305 9 O -0.491 6.491 10 N -0.553 5.553 11 C 0.143 3.857 12 C -0.003 4.003 13 C -0.497 4.497 14 H 0.073 0.927 15 C 0.111 3.889 16 N -0.874 5.874 17 Si 0.881 3.119 18 H -0.274 1.274 19 H -0.300 1.300 20 H -0.270 1.270 21 C -0.202 4.202 22 C -0.188 4.188 23 C 0.535 3.465 24 O -0.485 6.485 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.431 0.569 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.264 0.736 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.804 -16.040 -1.753 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.153 4.153 3 C 0.035 3.965 4 C -0.106 4.106 5 C -0.212 4.212 6 C -0.203 4.203 7 N -0.394 5.394 8 C 0.395 3.605 9 O -0.359 6.359 10 N -0.297 5.297 11 C 0.024 3.976 12 C -0.004 4.004 13 C -0.533 4.533 14 H 0.091 0.909 15 C -0.095 4.095 16 N -0.508 5.508 17 Si 0.714 3.286 18 H -0.202 1.202 19 H -0.229 1.229 20 H -0.196 1.196 21 C -0.240 4.240 22 C -0.225 4.225 23 C 0.322 3.678 24 O -0.357 6.357 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.275 0.725 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.372 -15.461 -1.878 16.176 hybrid contribution -0.781 -0.321 0.148 0.858 sum 3.591 -15.782 -1.729 16.277 Atomic orbital electron populations 1.21841 0.95095 1.02203 1.02538 1.21743 0.96753 0.92951 1.03871 1.21505 0.96088 0.93751 0.85143 1.21293 0.90599 0.98402 1.00310 1.21913 1.01109 0.94546 1.03649 1.21855 1.01158 0.99930 0.97323 1.45561 1.54883 1.30893 1.08087 1.15883 0.80605 0.81817 0.82185 1.91134 1.47250 1.39523 1.57960 1.46223 1.47185 1.28335 1.07954 1.21795 0.94192 0.87443 0.94220 1.19602 0.95438 0.93964 0.91441 1.20058 0.99779 1.25844 1.07647 0.90852 1.24713 0.98164 0.92793 0.93863 1.69809 1.31745 1.42643 1.06628 0.87017 0.85145 0.77836 0.78582 1.20160 1.22858 1.19592 1.23169 1.01900 0.99174 0.99794 1.22785 0.92876 1.00296 1.06577 1.20576 0.77415 0.80431 0.89383 1.90713 1.59338 1.70154 1.15521 0.92871 0.91851 0.91993 0.89760 0.89811 0.89356 0.91528 0.92161 0.92000 0.92209 0.91959 0.92274 0.72481 0.90458 0.90244 0.92572 0.91393 0.89382 0.90115 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.40 37.16 0.35 -1.49 16 2 C -0.11 -1.20 4.96 -26.73 -0.13 -1.33 16 3 C 0.13 1.70 0.50 -132.09 -0.07 1.63 16 4 C -0.09 -1.01 2.45 -90.61 -0.22 -1.23 16 5 C -0.15 -2.22 8.68 37.16 0.32 -1.90 16 6 C -0.15 -1.26 8.74 37.16 0.32 -0.94 16 7 N -0.73 -10.86 4.09 -52.94 -0.22 -11.07 16 8 C 0.69 14.32 8.47 -88.03 -0.75 13.58 16 9 O -0.49 -12.41 13.85 5.33 0.07 -12.33 16 10 N -0.55 -11.31 2.58 -120.73 -0.31 -11.62 16 11 C 0.14 3.26 4.63 -4.04 -0.02 3.24 16 12 C 0.00 -0.06 1.47 -155.66 -0.23 -0.29 16 13 C -0.50 -14.15 9.33 -34.44 -0.32 -14.48 16 14 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16 15 C 0.11 3.23 3.75 -17.82 -0.07 3.17 16 16 N -0.87 -27.04 13.95 55.43 0.77 -26.27 16 17 Si 0.88 22.89 22.98 -169.99 -3.91 18.99 16 18 H -0.27 -7.08 6.63 56.52 0.37 -6.70 16 19 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 20 H -0.27 -6.58 6.74 56.52 0.38 -6.20 16 21 C -0.20 -4.39 9.88 -26.73 -0.26 -4.66 16 22 C -0.19 -4.05 9.79 -26.73 -0.26 -4.31 16 23 C 0.54 9.43 4.12 -10.56 -0.04 9.39 16 24 O -0.49 -9.20 16.87 5.59 0.09 -9.11 16 25 H 0.05 0.72 7.14 -51.93 -0.37 0.35 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.77 7.64 -51.93 -0.40 0.38 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.67 6.66 -51.93 -0.35 0.32 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.06 7.66 -51.94 -0.40 0.67 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.06 6.96 -51.93 -0.36 0.70 16 34 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.52 7.26 -51.93 -0.38 0.14 16 37 H 0.43 5.31 8.29 -40.82 -0.34 4.97 16 38 H 0.08 1.61 7.74 -51.93 -0.40 1.20 16 39 H 0.08 1.95 1.74 -51.93 -0.09 1.86 16 40 H 0.26 7.84 8.32 -40.82 -0.34 7.50 16 41 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 42 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 43 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 44 H 0.08 1.57 7.20 -51.93 -0.37 1.20 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -33.24 337.29 -6.57 -39.81 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.78 Total: 6.17 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.37 Total: 0.36 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.25 Total: -48.97 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.17 Total: -21.44 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -3.91 Total: 18.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.24 -6.57 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596257735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.967 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds