Wall clock time and date at job start Tue Mar 31 2020 06:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46774 * 2 1 4 4 C 1.53005 * 110.53252 * 182.12934 * 3 2 1 5 5 C 1.53004 * 109.47085 * 179.80646 * 4 3 2 6 6 C 1.53002 * 109.46797 * 299.80062 * 4 3 2 7 7 N 1.47311 * 110.60279 * 59.29899 * 3 2 1 8 8 C 1.34522 * 106.61712 * 241.31804 * 7 3 2 9 9 O 1.21544 * 123.77007 * 180.02562 * 8 7 3 10 10 N 1.33787 * 112.46130 * 0.26606 * 8 7 3 11 11 C 1.46505 * 124.17954 * 179.70012 * 10 8 7 12 12 C 1.52989 * 109.47452 * 85.51725 * 11 10 8 13 13 C 1.50702 * 115.55250 * 281.13224 * 12 11 10 14 14 H 1.08006 * 120.00086 * 145.24382 * 13 12 11 15 15 C 1.37871 * 119.99713 * 325.24778 * 13 12 11 16 16 N 1.31517 * 119.99793 * 166.17040 * 15 13 12 17 17 Si 1.86797 * 120.00362 * 346.17593 * 15 13 12 18 18 H 1.48501 * 109.47037 * 95.40139 * 17 15 13 19 19 H 1.48498 * 109.47330 * 215.40018 * 17 15 13 20 20 H 1.48505 * 109.46847 * 335.40140 * 17 15 13 21 21 C 1.52999 * 117.49852 * 135.42563 * 12 11 10 22 22 C 1.53002 * 60.00380 * 252.50973 * 21 12 11 23 23 C 1.34766 * 111.64326 * 359.53430 * 10 8 7 24 24 O 1.21239 * 127.16112 * 180.14348 * 23 10 8 25 25 H 1.09000 * 109.46844 * 60.00170 * 1 2 3 26 26 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47228 * 300.00449 * 1 2 3 28 28 H 1.08999 * 109.47228 * 239.99551 * 2 1 3 29 29 H 1.09000 * 109.46844 * 119.99830 * 2 1 3 30 30 H 1.08996 * 109.47023 * 59.80089 * 4 3 2 31 31 H 1.08989 * 109.47071 * 62.12939 * 5 4 3 32 32 H 1.09006 * 109.46671 * 182.12981 * 5 4 3 33 33 H 1.08997 * 109.46595 * 302.12585 * 5 4 3 34 34 H 1.09003 * 109.46894 * 60.00170 * 6 4 3 35 35 H 1.08999 * 109.47036 * 179.97438 * 6 4 3 36 36 H 1.08996 * 109.47356 * 299.99823 * 6 4 3 37 37 H 0.97000 * 126.68630 * 61.33541 * 7 3 2 38 38 H 1.09004 * 109.46770 * 205.52050 * 11 10 8 39 39 H 1.08999 * 109.46685 * 325.51218 * 11 10 8 40 40 H 0.96998 * 120.00181 * 185.00382 * 16 15 13 41 41 H 1.08997 * 117.50167 * 359.97438 * 21 12 11 42 42 H 1.09005 * 117.50066 * 145.02463 * 21 12 11 43 43 H 1.08997 * 117.50004 * 252.51620 * 22 21 12 44 44 H 1.08993 * 117.49701 * 107.48559 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5688 1.4712 -0.0532 5 6 4.0518 2.9231 -0.0571 6 6 4.1354 0.7486 1.1706 7 7 1.5490 2.1658 1.1856 8 6 0.8018 3.1878 0.7307 9 8 0.2429 3.9900 1.4528 10 7 0.7383 3.2194 -0.6053 11 6 -0.0106 4.2197 -1.3702 12 6 0.8595 5.4611 -1.5756 13 6 0.9546 6.3912 -0.3937 14 1 1.8751 6.9202 -0.1954 15 6 -0.1335 6.5665 0.4347 16 7 0.0172 7.1505 1.6034 17 14 -1.8217 5.9746 -0.1027 18 1 -2.0728 4.6217 0.4558 19 1 -2.8576 6.9153 0.3943 20 1 -1.8767 5.9160 -1.5856 21 6 0.8781 6.0877 -2.9713 22 6 2.0980 5.3170 -2.4626 23 6 1.4513 2.2197 -1.1606 24 8 1.5885 1.9869 -2.3425 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9102 0.9723 -0.9602 31 1 3.7427 3.4112 0.8671 32 1 5.1390 2.9440 -0.1331 33 1 3.6178 3.4480 -0.9080 34 1 3.7913 -0.2857 1.1733 35 1 5.2245 0.7687 1.1325 36 1 3.7940 1.2475 2.0775 37 1 1.7295 1.9479 2.1134 38 1 -0.2858 3.8043 -2.3397 39 1 -0.9126 4.4945 -0.8234 40 1 -0.7321 7.2092 2.2166 41 1 0.2708 5.6152 -3.7433 42 1 0.9590 7.1729 -3.0349 43 1 2.9813 5.8950 -2.1912 44 1 2.2927 4.3377 -2.8996 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596257735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:57 Heat of formation + Delta-G solvation = -27.155655 kcal Electronic energy + Delta-G solvation = -26742.135852 eV Core-core repulsion = 23275.064945 eV Total energy + Delta-G solvation = -3467.070908 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.69984 -39.58699 -39.21864 -37.91235 -36.20243 -34.25207 -34.19653 -33.25606 -29.61619 -28.13648 -27.89988 -27.17105 -24.35385 -23.36221 -22.86832 -21.99965 -21.04184 -20.91317 -18.99587 -18.46031 -17.98789 -17.42935 -16.81729 -16.55419 -16.40168 -15.88151 -15.56318 -15.30599 -15.06285 -14.92582 -14.68676 -14.52843 -14.21113 -13.95160 -13.86489 -13.21155 -13.10568 -12.97839 -12.71286 -12.59011 -12.30284 -12.25387 -12.11813 -12.00726 -11.89188 -11.74001 -11.71763 -11.43842 -11.21772 -10.96705 -10.80386 -10.45717 -10.26243 -10.21499 -8.24480 -6.20247 0.71537 1.24046 1.28261 1.32483 1.38991 2.21691 2.29602 2.36837 2.88994 3.02425 3.34395 3.47810 3.66761 3.73964 3.98955 4.09135 4.14699 4.23011 4.23492 4.33010 4.35481 4.45329 4.61394 4.61962 4.71073 4.78457 4.79560 4.84936 4.88870 4.95838 4.96565 5.05212 5.09708 5.15087 5.16583 5.25477 5.35103 5.44002 5.45573 5.71598 6.00216 6.26300 6.31953 6.48067 6.71955 7.35712 7.41474 8.90179 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017802 B = 0.007599 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.440571 B = 3683.982558 C = 3907.591122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.108 4.108 3 C 0.132 3.868 4 C -0.080 4.080 5 C -0.154 4.154 6 C -0.141 4.141 7 N -0.705 5.705 8 C 0.688 3.312 9 O -0.549 6.549 10 N -0.564 5.564 11 C 0.142 3.858 12 C -0.030 4.030 13 C -0.496 4.496 14 H 0.027 0.973 15 C 0.068 3.932 16 N -0.921 5.921 17 Si 0.934 3.066 18 H -0.277 1.277 19 H -0.306 1.306 20 H -0.242 1.242 21 C -0.185 4.185 22 C -0.168 4.168 23 C 0.530 3.470 24 O -0.498 6.498 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.445 0.555 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.261 0.739 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 -19.659 -3.160 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.146 4.146 3 C 0.042 3.958 4 C -0.099 4.099 5 C -0.211 4.211 6 C -0.198 4.198 7 N -0.371 5.371 8 C 0.389 3.611 9 O -0.422 6.422 10 N -0.308 5.308 11 C 0.022 3.978 12 C -0.032 4.032 13 C -0.533 4.533 14 H 0.045 0.955 15 C -0.133 4.133 16 N -0.558 5.558 17 Si 0.765 3.235 18 H -0.206 1.206 19 H -0.235 1.235 20 H -0.167 1.167 21 C -0.224 4.224 22 C -0.205 4.205 23 C 0.319 3.681 24 O -0.371 6.371 25 H 0.046 0.954 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.121 0.879 29 H 0.139 0.861 30 H 0.123 0.877 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.291 0.709 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.138 -19.143 -3.321 20.097 hybrid contribution -0.855 0.797 0.542 1.289 sum 4.282 -18.346 -2.778 19.043 Atomic orbital electron populations 1.21865 0.96074 1.03356 1.00541 1.21855 0.95788 0.90401 1.06564 1.21814 0.97235 0.94723 0.82077 1.21358 0.88790 0.96892 1.02908 1.21900 1.02361 0.96122 1.00751 1.21864 1.01910 1.00888 0.95165 1.45443 1.53038 1.29235 1.09409 1.16148 0.80693 0.82225 0.82055 1.91094 1.49928 1.42025 1.59115 1.46280 1.47724 1.28725 1.08054 1.21615 0.93466 0.87572 0.95182 1.19511 0.98185 0.94476 0.91006 1.20101 0.97735 1.25966 1.09450 0.95515 1.25325 1.01492 0.92923 0.93601 1.69947 1.32540 1.45231 1.08109 0.86156 0.80776 0.76811 0.79745 1.20552 1.23458 1.16660 1.23211 1.01604 0.99335 0.98229 1.22688 0.92087 1.00779 1.04966 1.21279 0.76618 0.79851 0.90307 1.90693 1.59648 1.70376 1.16340 0.95434 0.89151 0.93459 0.87909 0.86127 0.87671 0.93984 0.90096 0.95380 0.89389 0.90695 0.92646 0.70894 0.88285 0.92122 0.93000 0.88389 0.89673 0.90927 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 9.40 71.98 0.68 -2.58 16 2 C -0.11 -1.77 4.96 30.59 0.15 -1.62 16 3 C 0.13 3.19 0.50 2.98 0.00 3.20 16 4 C -0.08 -1.61 2.45 -10.79 -0.03 -1.64 16 5 C -0.15 -4.25 8.68 71.98 0.62 -3.63 16 6 C -0.14 -1.82 8.74 71.98 0.63 -1.19 16 7 N -0.70 -20.26 4.09 -439.82 -1.80 -22.06 16 8 C 0.69 28.71 8.47 179.44 1.52 30.23 16 9 O -0.55 -28.82 13.85 -3.85 -0.05 -28.88 16 10 N -0.56 -22.88 2.58 -773.13 -2.00 -24.88 16 11 C 0.14 6.38 4.63 86.37 0.40 6.78 16 12 C -0.03 -1.45 1.47 -52.93 -0.08 -1.53 16 13 C -0.50 -29.39 9.33 25.60 0.24 -29.15 16 14 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 15 C 0.07 4.13 3.75 84.65 0.32 4.44 16 16 N -0.92 -60.02 13.95 21.45 0.30 -59.72 16 17 Si 0.93 48.50 22.98 68.60 1.58 50.08 16 18 H -0.28 -14.45 6.63 99.48 0.66 -13.79 16 19 H -0.31 -15.86 7.11 99.48 0.71 -15.16 16 20 H -0.24 -11.28 6.74 99.48 0.67 -10.61 16 21 C -0.19 -7.75 9.88 30.59 0.30 -7.45 16 22 C -0.17 -7.12 9.79 30.60 0.30 -6.82 16 23 C 0.53 17.84 4.12 87.94 0.36 18.20 16 24 O -0.50 -17.78 16.87 -2.90 -0.05 -17.82 16 25 H 0.03 0.69 7.14 -2.39 -0.02 0.67 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.09 7.64 -2.39 -0.02 1.07 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.12 1.18 6.66 -2.39 -0.02 1.17 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.34 7.66 -2.39 -0.02 1.33 16 32 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.03 0.94 6.96 -2.39 -0.02 0.93 16 34 H 0.09 0.69 6.57 -2.39 -0.02 0.68 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.78 7.26 -2.39 -0.02 0.76 16 37 H 0.44 10.31 8.29 -92.71 -0.77 9.54 16 38 H 0.10 3.92 7.74 -2.39 -0.02 3.90 16 39 H 0.06 2.96 1.74 -2.39 0.00 2.96 16 40 H 0.26 16.33 8.32 -92.71 -0.77 15.56 16 41 H 0.10 3.54 8.09 -2.39 -0.02 3.52 16 42 H 0.08 3.60 8.14 -2.38 -0.02 3.58 16 43 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.09 3.56 7.20 -2.39 -0.02 3.54 16 Total: -1.00 -77.83 337.29 3.56 -74.27 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.16 Total: 21.77 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 5.42 Total: 7.23 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -3.50 Total: -106.65 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.10 Total: -46.70 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.58 Total: 50.08 kcal Total: -77.83 3.56 -74.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596257735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.117 kcal (2) G-P(sol) polarization free energy of solvation -77.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds