Wall clock time and date at job start Tue Mar 31 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47391 * 2 1 4 4 C 1.53010 * 109.46986 * 240.00148 * 2 1 3 5 5 C 1.52996 * 109.47554 * 120.00451 * 2 1 3 6 6 C 1.53005 * 110.53235 * 298.61808 * 5 2 1 7 7 N 1.47313 * 110.60053 * 61.45196 * 5 2 1 8 8 C 1.34530 * 106.61872 * 118.91077 * 7 5 2 9 9 O 1.21537 * 123.77065 * 179.77625 * 8 7 5 10 10 N 1.33794 * 112.45821 * 359.60809 * 8 7 5 11 11 C 1.46501 * 124.17736 * 180.14472 * 10 8 7 12 12 C 1.53002 * 109.46700 * 269.32552 * 11 10 8 13 13 C 1.50698 * 115.54978 * 185.56169 * 12 11 10 14 14 H 1.07998 * 120.00228 * 144.47941 * 13 12 11 15 15 C 1.37885 * 119.99938 * 324.48662 * 13 12 11 16 16 N 1.31512 * 119.99722 * 349.49040 * 15 13 12 17 17 Si 1.86798 * 119.99994 * 169.49535 * 15 13 12 18 18 H 1.48503 * 109.47253 * 59.99620 * 17 15 13 19 19 H 1.48496 * 109.47415 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47344 * 299.99873 * 17 15 13 21 21 C 1.52997 * 117.49797 * 39.89971 * 12 11 10 22 22 C 1.52994 * 117.50326 * 331.23592 * 12 11 10 23 23 C 1.34765 * 111.64449 * 0.40995 * 10 8 7 24 24 O 1.21229 * 127.15959 * 179.72823 * 23 10 8 25 25 H 1.09007 * 109.47017 * 299.99574 * 1 2 3 26 26 H 1.08994 * 109.47450 * 59.99720 * 1 2 3 27 27 H 1.09002 * 109.47126 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47428 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47027 * 300.00682 * 3 2 1 30 30 H 1.08996 * 109.47180 * 60.00122 * 3 2 1 31 31 H 1.08995 * 109.46657 * 300.00135 * 4 2 1 32 32 H 1.09000 * 109.46501 * 59.99846 * 4 2 1 33 33 H 1.09001 * 109.47014 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46643 * 177.71794 * 6 5 2 35 35 H 1.08994 * 109.47470 * 297.72335 * 6 5 2 36 36 H 1.08999 * 109.46481 * 57.72623 * 6 5 2 37 37 H 0.96996 * 126.68978 * 298.64430 * 7 5 2 38 38 H 1.09001 * 109.47197 * 29.32567 * 11 10 8 39 39 H 1.09002 * 109.47312 * 149.32978 * 11 10 8 40 40 H 0.97002 * 119.99542 * 185.22080 * 16 15 13 41 41 H 1.09000 * 117.50451 * 359.97438 * 21 12 11 42 42 H 1.09004 * 117.50413 * 145.01843 * 21 12 11 43 43 H 1.08999 * 117.50167 * 214.97987 * 22 12 11 44 44 H 1.09003 * 117.49947 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 2.0400 -0.7213 1.2491 6 6 1.5719 0.0005 2.5144 7 7 1.5916 -2.1245 1.2568 8 6 2.7022 -2.8835 1.2453 9 8 2.6901 -4.0988 1.2516 10 7 3.8216 -2.1510 1.2226 11 6 5.1737 -2.7146 1.2028 12 6 5.6751 -2.8874 2.6380 13 6 7.1067 -3.3374 2.7766 14 1 7.7129 -2.9668 3.5899 15 6 7.6426 -4.2222 1.8649 16 7 6.8595 -4.8322 1.0021 17 14 9.4807 -4.5546 1.8553 18 1 9.8913 -5.1040 3.1725 19 1 9.8007 -5.5367 0.7885 20 1 10.2115 -3.2878 1.5979 21 6 4.6735 -3.3873 3.6808 22 6 5.1310 -1.9266 3.6970 23 6 3.5518 -0.8306 1.2259 24 8 4.3517 0.0803 1.2136 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6765 -1.7489 -1.2493 32 1 1.6765 -0.2073 -2.1392 33 1 3.1299 -0.7209 -1.2496 34 1 1.9102 -0.5495 3.3926 35 1 1.9886 1.0075 2.5335 36 1 0.4834 0.0575 2.5184 37 1 0.6744 -2.4397 1.2717 38 1 5.1560 -3.6841 0.7049 39 1 5.8402 -2.0413 0.6637 40 1 7.2237 -5.5102 0.4118 41 1 3.6571 -3.5927 3.3447 42 1 5.0499 -4.0413 4.4675 43 1 5.8083 -1.6202 4.4941 44 1 4.4161 -1.1711 3.3713 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596279556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:38 Heat of formation + Delta-G solvation = -19.287436 kcal Electronic energy + Delta-G solvation = -26202.378865 eV Core-core repulsion = 22735.649149 eV Total energy + Delta-G solvation = -3466.729716 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.39632 -38.40367 -37.74145 -36.27463 -35.04156 -33.02419 -32.17994 -30.18832 -27.84546 -27.11884 -26.81172 -25.48221 -24.28237 -22.36930 -21.00082 -20.74869 -18.99765 -18.77850 -17.41607 -16.95617 -16.05151 -15.71000 -15.26664 -14.96913 -14.71933 -14.43486 -14.27362 -14.25073 -13.57014 -13.21494 -12.94932 -12.81379 -12.47612 -12.40575 -12.20991 -12.06321 -11.97190 -11.59142 -11.53961 -11.29329 -11.03188 -10.96579 -10.89360 -10.79384 -10.48323 -10.24097 -10.15028 -10.00376 -9.46210 -9.14426 -9.10112 -8.88889 -8.55886 -8.05443 -6.09059 -4.13197 2.10614 2.82736 3.28706 3.34109 3.37143 3.49539 3.63778 4.19964 4.34451 4.38028 4.58006 4.86856 4.96750 5.01787 5.17278 5.43136 5.45509 5.51984 5.54714 5.54994 5.65609 5.76398 5.78238 5.79305 5.89017 5.94497 6.06979 6.10538 6.19853 6.27460 6.34619 6.41428 6.45661 6.69524 6.82597 7.03386 7.08426 7.18776 7.36096 7.52382 7.75915 7.93373 7.94374 8.33964 8.70123 8.83715 9.46139 10.93432 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024774 B = 0.005180 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.953417 B = 5403.690697 C = 5443.975006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.151 4.151 4 C -0.149 4.149 5 C 0.125 3.875 6 C -0.150 4.150 7 N -0.730 5.730 8 C 0.700 3.300 9 O -0.531 6.531 10 N -0.564 5.564 11 C 0.150 3.850 12 C 0.046 3.954 13 C -0.488 4.488 14 H 0.065 0.935 15 C 0.068 3.932 16 N -0.881 5.881 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.199 4.199 22 C -0.210 4.210 23 C 0.529 3.471 24 O -0.470 6.470 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.430 0.570 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.267 0.733 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 10.381 -2.943 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.059 4.059 3 C -0.209 4.209 4 C -0.206 4.206 5 C 0.034 3.966 6 C -0.208 4.208 7 N -0.395 5.395 8 C 0.401 3.599 9 O -0.403 6.403 10 N -0.309 5.309 11 C 0.032 3.968 12 C 0.045 3.955 13 C -0.526 4.526 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.518 5.518 17 Si 0.728 3.272 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.237 4.237 22 C -0.248 4.248 23 C 0.315 3.685 24 O -0.340 6.340 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.274 0.726 38 H 0.158 0.842 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.226 10.049 -3.172 16.910 hybrid contribution 0.435 -0.419 0.183 0.631 sum -12.790 9.630 -2.989 16.287 Atomic orbital electron populations 1.21902 0.93464 1.02040 1.02384 1.20647 0.96391 0.96030 0.92805 1.22047 1.03321 0.93590 1.01934 1.21947 1.01485 1.00630 0.96524 1.21472 0.92953 0.83975 0.98181 1.22078 1.02362 1.01294 0.95074 1.45674 1.08084 1.05463 1.80326 1.15949 0.80988 0.85595 0.77383 1.91024 1.85464 1.09979 1.53877 1.46863 1.10219 1.07659 1.66126 1.21909 0.74342 1.01376 0.99185 1.19252 0.93755 0.96117 0.86410 1.20446 0.93518 1.27024 1.11595 0.91673 1.25046 0.98414 0.95206 0.94858 1.69728 1.34960 1.24426 1.22666 0.86504 0.84742 0.78118 0.77833 1.20157 1.21080 1.19940 1.23009 0.99631 0.95097 1.05987 1.22912 1.04334 0.92237 1.05268 1.20533 0.89980 0.83275 0.74663 1.90723 1.54573 1.42379 1.46370 0.91947 0.91905 0.92463 0.90530 0.92214 0.92014 0.92042 0.91805 0.92483 0.91318 0.89910 0.90563 0.72637 0.84161 0.90582 0.92279 0.91465 0.90496 0.90601 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.04 37.15 0.30 -0.81 16 2 C -0.06 -0.62 0.42 -154.51 -0.07 -0.68 16 3 C -0.15 -1.57 7.86 37.16 0.29 -1.28 16 4 C -0.15 -1.78 7.97 37.16 0.30 -1.48 16 5 C 0.13 1.65 0.47 -132.09 -0.06 1.59 16 6 C -0.15 -1.65 8.25 37.16 0.31 -1.35 16 7 N -0.73 -10.15 4.78 -52.93 -0.25 -10.40 16 8 C 0.70 13.59 7.04 -88.01 -0.62 12.97 16 9 O -0.53 -12.37 16.65 5.33 0.09 -12.28 16 10 N -0.56 -11.54 1.86 -120.72 -0.22 -11.77 16 11 C 0.15 3.68 5.02 -4.04 -0.02 3.66 16 12 C 0.05 1.18 2.37 -155.66 -0.37 0.81 16 13 C -0.49 -13.47 9.04 -34.44 -0.31 -13.79 16 14 H 0.07 1.78 7.84 -52.49 -0.41 1.37 16 15 C 0.07 1.84 5.25 -17.82 -0.09 1.75 16 16 N -0.88 -24.58 10.76 55.43 0.60 -23.99 16 17 Si 0.90 20.94 29.55 -169.99 -5.02 15.92 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.20 -4.87 9.63 -26.69 -0.26 -5.13 16 22 C -0.21 -4.86 9.56 -26.70 -0.26 -5.12 16 23 C 0.53 9.52 3.45 -10.55 -0.04 9.48 16 24 O -0.47 -9.34 15.58 5.60 0.09 -9.26 16 25 H 0.06 0.42 6.50 -51.93 -0.34 0.08 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 7.20 -51.93 -0.37 0.06 16 28 H 0.08 1.00 6.11 -51.93 -0.32 0.68 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 31 H 0.06 0.77 7.62 -51.93 -0.40 0.37 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.82 7.16 -51.93 -0.37 0.45 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.88 6.64 -51.93 -0.34 0.53 16 36 H 0.08 0.62 6.46 -51.93 -0.34 0.28 16 37 H 0.43 4.70 8.25 -40.82 -0.34 4.36 16 38 H 0.14 3.81 5.70 -51.93 -0.30 3.51 16 39 H 0.08 1.90 8.02 -51.93 -0.42 1.48 16 40 H 0.27 7.11 8.32 -40.82 -0.34 6.77 16 41 H 0.07 1.63 5.56 -51.93 -0.29 1.34 16 42 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 43 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.06 1.32 5.59 -51.93 -0.29 1.03 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -30.93 337.24 -7.07 -38.00 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.53 Total: 8.05 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.90 Total: 0.64 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.12 Total: -46.15 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.18 Total: -21.53 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.93 -7.07 -38.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596279556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.710 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds