Wall clock time and date at job start Tue Mar 31 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47391 * 2 1 4 4 C 1.53010 * 109.46986 * 240.00148 * 2 1 3 5 5 C 1.52996 * 109.47554 * 120.00451 * 2 1 3 6 6 C 1.53005 * 110.53235 * 298.61808 * 5 2 1 7 7 N 1.47313 * 110.60053 * 61.45196 * 5 2 1 8 8 C 1.34530 * 106.61872 * 118.91077 * 7 5 2 9 9 O 1.21537 * 123.77065 * 179.77625 * 8 7 5 10 10 N 1.33794 * 112.45821 * 359.60809 * 8 7 5 11 11 C 1.46501 * 124.17736 * 180.14472 * 10 8 7 12 12 C 1.53002 * 109.46700 * 269.32552 * 11 10 8 13 13 C 1.50698 * 115.54978 * 185.56169 * 12 11 10 14 14 H 1.07998 * 120.00228 * 144.47941 * 13 12 11 15 15 C 1.37885 * 119.99938 * 324.48662 * 13 12 11 16 16 N 1.31512 * 119.99722 * 349.49040 * 15 13 12 17 17 Si 1.86798 * 119.99994 * 169.49535 * 15 13 12 18 18 H 1.48503 * 109.47253 * 59.99620 * 17 15 13 19 19 H 1.48496 * 109.47415 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47344 * 299.99873 * 17 15 13 21 21 C 1.52997 * 117.49797 * 39.89971 * 12 11 10 22 22 C 1.52994 * 117.50326 * 331.23592 * 12 11 10 23 23 C 1.34765 * 111.64449 * 0.40995 * 10 8 7 24 24 O 1.21229 * 127.15959 * 179.72823 * 23 10 8 25 25 H 1.09007 * 109.47017 * 299.99574 * 1 2 3 26 26 H 1.08994 * 109.47450 * 59.99720 * 1 2 3 27 27 H 1.09002 * 109.47126 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47428 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.47027 * 300.00682 * 3 2 1 30 30 H 1.08996 * 109.47180 * 60.00122 * 3 2 1 31 31 H 1.08995 * 109.46657 * 300.00135 * 4 2 1 32 32 H 1.09000 * 109.46501 * 59.99846 * 4 2 1 33 33 H 1.09001 * 109.47014 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46643 * 177.71794 * 6 5 2 35 35 H 1.08994 * 109.47470 * 297.72335 * 6 5 2 36 36 H 1.08999 * 109.46481 * 57.72623 * 6 5 2 37 37 H 0.96996 * 126.68978 * 298.64430 * 7 5 2 38 38 H 1.09001 * 109.47197 * 29.32567 * 11 10 8 39 39 H 1.09002 * 109.47312 * 149.32978 * 11 10 8 40 40 H 0.97002 * 119.99542 * 185.22080 * 16 15 13 41 41 H 1.09000 * 117.50451 * 359.97438 * 21 12 11 42 42 H 1.09004 * 117.50413 * 145.01843 * 21 12 11 43 43 H 1.08999 * 117.50167 * 214.97987 * 22 12 11 44 44 H 1.09003 * 117.49947 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 2.0400 -0.7213 1.2491 6 6 1.5719 0.0005 2.5144 7 7 1.5916 -2.1245 1.2568 8 6 2.7022 -2.8835 1.2453 9 8 2.6901 -4.0988 1.2516 10 7 3.8216 -2.1510 1.2226 11 6 5.1737 -2.7146 1.2028 12 6 5.6751 -2.8874 2.6380 13 6 7.1067 -3.3374 2.7766 14 1 7.7129 -2.9668 3.5899 15 6 7.6426 -4.2222 1.8649 16 7 6.8595 -4.8322 1.0021 17 14 9.4807 -4.5546 1.8553 18 1 9.8913 -5.1040 3.1725 19 1 9.8007 -5.5367 0.7885 20 1 10.2115 -3.2878 1.5979 21 6 4.6735 -3.3873 3.6808 22 6 5.1310 -1.9266 3.6970 23 6 3.5518 -0.8306 1.2259 24 8 4.3517 0.0803 1.2136 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6765 -1.7489 -1.2493 32 1 1.6765 -0.2073 -2.1392 33 1 3.1299 -0.7209 -1.2496 34 1 1.9102 -0.5495 3.3926 35 1 1.9886 1.0075 2.5335 36 1 0.4834 0.0575 2.5184 37 1 0.6744 -2.4397 1.2717 38 1 5.1560 -3.6841 0.7049 39 1 5.8402 -2.0413 0.6637 40 1 7.2237 -5.5102 0.4118 41 1 3.6571 -3.5927 3.3447 42 1 5.0499 -4.0413 4.4675 43 1 5.8083 -1.6202 4.4941 44 1 4.4161 -1.1711 3.3713 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596279556.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:37 Heat of formation + Delta-G solvation = -38.784822 kcal Electronic energy + Delta-G solvation = -26203.224335 eV Core-core repulsion = 22735.649149 eV Total energy + Delta-G solvation = -3467.575186 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.81273 -39.83909 -39.23855 -37.95633 -36.53431 -34.47595 -34.21019 -31.23190 -29.13127 -28.17939 -28.00292 -27.42252 -25.54663 -23.81415 -22.87650 -22.28478 -20.65568 -20.08786 -18.87348 -18.65666 -17.75053 -17.15236 -16.74009 -16.60410 -16.12355 -16.00455 -15.62847 -15.48379 -15.03673 -14.53922 -14.24227 -14.04537 -13.98004 -13.71720 -13.52079 -13.38329 -13.02139 -12.85613 -12.82702 -12.75884 -12.44883 -12.37593 -12.26341 -12.16761 -12.01486 -11.91367 -11.76539 -11.62031 -11.12522 -10.88564 -10.83422 -10.50322 -10.30254 -10.07639 -8.15550 -6.28591 0.66145 1.34333 1.42819 1.44671 1.52650 2.08201 2.23706 2.38511 2.91652 2.95445 3.36162 3.50111 3.63600 3.98670 4.11716 4.13800 4.21455 4.32375 4.42876 4.48972 4.58410 4.66785 4.67633 4.70716 4.76638 4.78164 4.85690 4.92170 4.95286 5.06069 5.07384 5.10237 5.12439 5.21254 5.25281 5.39838 5.45509 5.49505 5.51821 5.79254 5.88263 6.24848 6.27353 6.50348 6.71184 7.22210 7.34147 8.85416 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024774 B = 0.005180 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.953417 B = 5403.690697 C = 5443.975006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C -0.150 4.150 4 C -0.150 4.150 5 C 0.135 3.865 6 C -0.149 4.149 7 N -0.700 5.700 8 C 0.696 3.304 9 O -0.578 6.578 10 N -0.575 5.575 11 C 0.168 3.832 12 C 0.015 3.985 13 C -0.515 4.515 14 H 0.060 0.940 15 C 0.024 3.976 16 N -0.906 5.906 17 Si 0.965 3.035 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.269 1.269 21 C -0.195 4.195 22 C -0.185 4.185 23 C 0.520 3.480 24 O -0.493 6.493 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.021 0.979 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.448 0.552 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.267 0.733 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.019 12.249 -2.713 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.054 4.054 3 C -0.207 4.207 4 C -0.207 4.207 5 C 0.045 3.955 6 C -0.207 4.207 7 N -0.366 5.366 8 C 0.397 3.603 9 O -0.454 6.454 10 N -0.320 5.320 11 C 0.047 3.953 12 C 0.014 3.986 13 C -0.553 4.553 14 H 0.079 0.921 15 C -0.177 4.177 16 N -0.543 5.543 17 Si 0.790 3.210 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.194 1.194 21 C -0.233 4.233 22 C -0.223 4.223 23 C 0.308 3.692 24 O -0.365 6.365 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.136 0.864 37 H 0.296 0.704 38 H 0.128 0.872 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.461 11.968 -2.933 19.771 hybrid contribution 1.096 -0.945 0.072 1.449 sum -14.366 11.023 -2.861 18.332 Atomic orbital electron populations 1.21919 0.90084 1.03048 1.04337 1.20731 0.98818 0.95577 0.90244 1.22044 1.01239 0.93494 1.03960 1.21980 0.99275 1.00807 0.98637 1.21700 0.88857 0.83711 1.01257 1.22177 1.05023 1.00917 0.92536 1.45499 1.07491 1.05266 1.78373 1.16069 0.81832 0.85157 0.77212 1.90988 1.86169 1.12017 1.56228 1.46788 1.09249 1.09081 1.66844 1.21236 0.76370 0.99563 0.98082 1.19408 0.93618 0.98087 0.87486 1.20725 0.94714 1.27752 1.12066 0.92141 1.25811 1.02657 0.94855 0.94329 1.69898 1.36645 1.24672 1.23050 0.85497 0.79396 0.78112 0.78010 1.19571 1.20494 1.19380 1.22891 0.99207 0.96004 1.05223 1.22856 1.03773 0.91683 1.03951 1.21419 0.92419 0.81837 0.73492 1.90704 1.56032 1.42634 1.47140 0.89823 0.90251 0.91954 0.93813 0.90113 0.90134 0.92897 0.89408 0.95935 0.92764 0.89002 0.86418 0.70441 0.87214 0.92508 0.92304 0.91443 0.91179 0.90039 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.04 71.98 0.58 -0.88 16 2 C -0.05 -0.98 0.42 -52.18 -0.02 -1.00 16 3 C -0.15 -2.68 7.86 71.98 0.57 -2.11 16 4 C -0.15 -3.40 7.97 71.99 0.57 -2.83 16 5 C 0.13 3.28 0.47 2.99 0.00 3.29 16 6 C -0.15 -2.74 8.25 71.98 0.59 -2.14 16 7 N -0.70 -18.35 4.78 -439.80 -2.10 -20.45 16 8 C 0.70 27.43 7.04 179.44 1.26 28.69 16 9 O -0.58 -27.79 16.65 -3.83 -0.06 -27.86 16 10 N -0.58 -24.26 1.86 -773.11 -1.44 -25.69 16 11 C 0.17 8.66 5.02 86.38 0.43 9.10 16 12 C 0.02 0.81 2.37 -52.93 -0.13 0.69 16 13 C -0.52 -29.27 9.04 25.60 0.23 -29.04 16 14 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 15 C 0.02 1.35 5.25 84.66 0.44 1.79 16 16 N -0.91 -52.46 10.76 21.45 0.23 -52.23 16 17 Si 0.97 43.74 29.55 68.60 2.03 45.76 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 C -0.20 -9.74 9.63 30.62 0.29 -9.44 16 22 C -0.19 -8.63 9.56 30.62 0.29 -8.34 16 23 C 0.52 18.75 3.45 87.94 0.30 19.05 16 24 O -0.49 -19.93 15.58 -2.87 -0.04 -19.97 16 25 H 0.08 0.59 6.50 -2.38 -0.02 0.58 16 26 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.63 7.20 -2.39 -0.02 0.62 16 28 H 0.04 1.09 6.11 -2.39 -0.01 1.08 16 29 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.08 1.14 6.54 -2.39 -0.02 1.12 16 31 H 0.05 1.27 7.62 -2.39 -0.02 1.25 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.02 0.65 7.16 -2.39 -0.02 0.63 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 1.59 6.64 -2.39 -0.02 1.58 16 36 H 0.12 1.23 6.46 -2.39 -0.02 1.22 16 37 H 0.45 8.57 8.25 -92.71 -0.76 7.80 16 38 H 0.11 6.35 5.70 -2.39 -0.01 6.34 16 39 H 0.06 3.04 8.02 -2.39 -0.02 3.02 16 40 H 0.27 14.71 8.32 -92.71 -0.77 13.94 16 41 H 0.07 3.34 5.56 -2.39 -0.01 3.33 16 42 H 0.07 3.53 8.14 -2.38 -0.02 3.51 16 43 H 0.08 3.68 8.14 -2.39 -0.02 3.66 16 44 H 0.07 3.19 5.59 -2.39 -0.01 3.18 16 Total: -1.00 -71.26 337.24 4.30 -66.96 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.26 Total: 26.66 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.43 Total: 6.82 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -3.31 Total: -98.38 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -0.11 Total: -47.83 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.26 4.30 -66.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596279556.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.176 kcal (2) G-P(sol) polarization free energy of solvation -71.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds