Wall clock time and date at job start Tue Mar 31 2020 07:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.42907 * 113.99876 * 60.00359 * 5 2 1 7 7 H 1.09005 * 115.54900 * 4.27832 * 6 5 2 8 8 C 1.52995 * 117.49731 * 218.60740 * 6 5 2 9 9 C 1.53000 * 117.49552 * 149.98130 * 6 5 2 10 10 H 1.08996 * 117.50577 * 0.02562 * 9 6 5 11 11 C 1.50705 * 117.49751 * 214.97926 * 9 6 5 12 12 O 1.21279 * 119.99829 * 0.02562 * 11 9 6 13 13 N 1.34775 * 120.00089 * 180.02562 * 11 9 6 14 14 C 1.46499 * 120.00141 * 180.02562 * 13 11 9 15 15 C 1.50704 * 109.47198 * 89.99693 * 14 13 11 16 16 H 1.08003 * 119.99671 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99925 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00161 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99964 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47454 * 59.99693 * 19 17 15 21 21 H 1.48496 * 109.47186 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47136 * 299.99500 * 19 17 15 23 23 C 1.46498 * 119.99903 * 359.97438 * 13 11 9 24 24 C 1.52998 * 109.47241 * 90.00411 * 23 13 11 25 25 C 1.47207 * 109.47292 * 180.02562 * 24 23 13 26 26 N 8.60369 * 112.57914 * 244.24911 * 2 1 3 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 34 34 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 36 36 H 1.09004 * 117.50072 * 359.97438 * 8 6 5 37 37 H 1.08999 * 117.49918 * 145.02378 * 8 6 5 38 38 H 1.08997 * 109.46954 * 209.99290 * 14 13 11 39 39 H 1.08994 * 109.46867 * 329.99610 * 14 13 11 40 40 H 0.96998 * 120.00382 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47556 * 210.00318 * 23 13 11 42 42 H 1.09007 * 109.47157 * 330.00627 * 23 13 11 43 43 H 1.09002 * 109.47243 * 300.00147 * 24 23 13 44 44 H 1.08997 * 109.46971 * 59.99940 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.5847 -0.0773 -2.3951 7 1 1.0193 0.8495 -2.2979 8 6 1.2111 -1.0157 -3.5442 9 6 2.5138 -0.2153 -3.6028 10 1 3.4464 -0.7613 -3.4606 11 6 2.5774 0.9408 -4.5674 12 8 1.9074 1.9323 -4.3706 13 7 3.3789 0.8728 -5.6489 14 6 3.4412 1.9968 -6.5863 15 6 4.5255 2.9507 -6.1556 16 1 5.1096 2.7408 -5.2717 17 6 4.7713 4.0918 -6.8894 18 7 4.0597 4.3476 -7.9654 19 14 6.1148 5.2745 -6.3551 20 1 7.4207 4.5675 -6.3432 21 1 6.1780 6.4138 -7.3054 22 1 5.8143 5.7821 -4.9923 23 6 4.1887 -0.3247 -5.8863 24 6 3.3918 -1.3198 -6.7323 25 6 4.2052 -2.5234 -6.9703 26 7 4.8335 -3.4514 -7.1553 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2493 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -0.2074 2.1393 36 1 1.2873 -2.0880 -3.3635 37 1 0.4001 -0.7061 -4.2034 38 1 3.6616 1.6240 -7.5865 39 1 2.4829 2.5161 -6.5950 40 1 4.2328 5.1502 -8.4819 41 1 5.1010 -0.0477 -6.4146 42 1 4.4466 -0.7840 -4.9320 43 1 2.4795 -1.5970 -6.2040 44 1 3.1338 -0.8606 -7.6865 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596892217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:43 Heat of formation + Delta-G solvation = -34.004541 kcal Electronic energy + Delta-G solvation = -23986.951743 eV Core-core repulsion = 20519.583845 eV Total energy + Delta-G solvation = -3467.367898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90008 -38.73953 -36.85678 -35.76181 -35.09521 -32.90594 -32.48489 -30.80853 -27.75439 -27.51623 -27.43097 -24.43777 -23.96342 -22.32953 -21.77262 -19.97921 -18.37708 -17.68957 -17.07282 -16.48499 -16.13564 -15.81213 -15.19152 -14.93614 -14.68290 -14.42409 -14.11378 -13.75321 -13.58078 -13.20616 -13.05754 -12.73432 -12.53157 -12.40523 -12.31702 -12.18745 -12.05793 -11.95077 -11.86354 -11.82232 -11.71438 -11.29003 -11.02557 -10.93749 -10.84483 -10.64412 -10.59111 -10.28625 -10.18957 -9.72859 -9.24403 -8.93821 -8.47244 -7.85019 -6.09127 -4.13766 2.76522 2.86172 3.02581 3.29872 3.30310 3.34795 3.38200 3.74681 4.07399 4.24870 4.42301 4.67984 4.72609 4.88523 4.90649 4.95255 5.07843 5.13150 5.23717 5.25370 5.29572 5.38986 5.44007 5.46998 5.53463 5.58867 5.69726 5.73207 5.74958 5.83621 5.89157 5.96374 6.02480 6.13498 6.16410 6.23615 6.93679 7.27134 7.34642 7.42591 7.62137 7.86908 8.16791 8.25908 8.82641 8.97953 9.51779 10.98965 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.004795 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.234297 B = 5837.929658 C = 7659.806892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 C -0.181 4.181 4 C -0.137 4.137 5 O -0.345 6.345 6 C 0.050 3.950 7 H 0.126 0.874 8 C -0.161 4.161 9 C -0.192 4.192 10 H 0.125 0.875 11 C 0.539 3.461 12 O -0.536 6.536 13 N -0.591 5.591 14 C 0.245 3.755 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.118 3.882 24 C -0.049 4.049 25 C 0.218 3.782 26 N -0.447 5.447 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.036 0.964 39 H 0.046 0.954 40 H 0.264 0.736 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 -10.612 12.498 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.069 3.931 3 C -0.238 4.238 4 C -0.194 4.194 5 O -0.264 6.264 6 C -0.008 4.008 7 H 0.143 0.857 8 C -0.199 4.199 9 C -0.214 4.214 10 H 0.143 0.857 11 C 0.325 3.675 12 O -0.413 6.413 13 N -0.321 5.321 14 C 0.126 3.874 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.008 4.008 24 C -0.091 4.091 25 C -0.099 4.099 26 N -0.125 5.125 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.126 0.874 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.895 -11.461 12.165 17.723 hybrid contribution 0.553 1.237 0.164 1.365 sum -5.341 -10.223 12.329 16.883 Atomic orbital electron populations 1.22465 0.95478 1.02712 1.02760 1.21538 0.93264 0.92384 0.85873 1.22489 1.02468 0.95902 1.02947 1.21760 1.02039 1.00670 0.94957 1.87867 1.73573 1.52723 1.12260 1.22530 0.99718 0.97931 0.80631 0.85667 1.23420 0.96688 0.98579 1.01227 1.22846 0.97414 1.00883 1.00234 0.85715 1.19337 0.79952 0.86790 0.81400 1.90672 1.43969 1.32690 1.73976 1.48112 1.41570 1.17223 1.25221 1.19363 0.98705 0.82512 0.86808 1.21384 1.17889 1.06321 1.11202 0.92419 1.24903 0.96527 0.97596 0.94874 1.69906 1.39990 1.26937 1.16448 0.86581 0.81991 0.80447 0.78551 1.20226 1.21185 1.20193 1.21315 0.94532 0.85368 0.99584 1.19889 0.97165 0.87572 1.04456 1.29116 0.93716 0.94263 0.92853 1.81195 1.09851 1.12074 1.09363 0.91796 0.91816 0.91648 0.91691 0.91630 0.91341 0.91919 0.91774 0.91112 0.87642 0.87629 0.94649 0.93555 0.92612 0.88906 0.90467 0.87382 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 8.38 37.16 0.31 -1.33 16 2 C 0.11 1.16 1.11 -90.62 -0.10 1.06 16 3 C -0.18 -2.03 8.38 37.16 0.31 -1.72 16 4 C -0.14 -1.20 8.84 37.16 0.33 -0.87 16 5 O -0.35 -4.47 10.24 -35.23 -0.36 -4.83 16 6 C 0.05 0.68 4.47 -26.73 -0.12 0.56 16 7 H 0.13 1.82 5.15 -51.93 -0.27 1.55 16 8 C -0.16 -1.86 10.18 -26.73 -0.27 -2.13 16 9 C -0.19 -2.72 5.24 -91.77 -0.48 -3.20 16 10 H 0.13 1.62 6.44 -51.93 -0.33 1.28 16 11 C 0.54 10.07 7.46 -10.98 -0.08 9.99 16 12 O -0.54 -12.32 15.84 5.56 0.09 -12.23 16 13 N -0.59 -10.98 2.46 -175.06 -0.43 -11.41 16 14 C 0.24 5.81 5.16 -5.19 -0.03 5.78 16 15 C -0.53 -14.19 9.39 -34.44 -0.32 -14.51 16 16 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 19 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.12 1.64 5.19 -4.04 -0.02 1.62 16 24 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 25 C 0.22 2.75 15.43 -20.76 -0.32 2.42 16 26 N -0.45 -6.77 18.54 42.15 0.78 -5.99 16 27 H 0.06 0.63 6.71 -51.93 -0.35 0.29 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.89 6.53 -51.93 -0.34 0.55 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 39 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 42 H 0.08 0.94 6.00 -51.93 -0.31 0.62 16 43 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -32.23 372.01 -6.69 -38.92 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.02 Total: -0.18 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.07 Total: -1.40 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 1.09 Total: -42.14 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.27 Total: -17.06 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.23 -6.69 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596892217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.914 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds