Wall clock time and date at job start Tue Mar 31 2020 07:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.42907 * 113.99876 * 60.00359 * 5 2 1 7 7 H 1.09005 * 115.54900 * 4.27832 * 6 5 2 8 8 C 1.52995 * 117.49731 * 218.60740 * 6 5 2 9 9 C 1.53000 * 117.49552 * 149.98130 * 6 5 2 10 10 H 1.08996 * 117.50577 * 0.02562 * 9 6 5 11 11 C 1.50705 * 117.49751 * 214.97926 * 9 6 5 12 12 O 1.21279 * 119.99829 * 0.02562 * 11 9 6 13 13 N 1.34775 * 120.00089 * 180.02562 * 11 9 6 14 14 C 1.46499 * 120.00141 * 180.02562 * 13 11 9 15 15 C 1.50704 * 109.47198 * 89.99693 * 14 13 11 16 16 H 1.08003 * 119.99671 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99925 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00161 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99964 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47454 * 59.99693 * 19 17 15 21 21 H 1.48496 * 109.47186 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47136 * 299.99500 * 19 17 15 23 23 C 1.46498 * 119.99903 * 359.97438 * 13 11 9 24 24 C 1.52998 * 109.47241 * 90.00411 * 23 13 11 25 25 C 1.47207 * 109.47292 * 180.02562 * 24 23 13 26 26 N 8.60369 * 112.57914 * 244.24911 * 2 1 3 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 34 34 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 36 36 H 1.09004 * 117.50072 * 359.97438 * 8 6 5 37 37 H 1.08999 * 117.49918 * 145.02378 * 8 6 5 38 38 H 1.08997 * 109.46954 * 209.99290 * 14 13 11 39 39 H 1.08994 * 109.46867 * 329.99610 * 14 13 11 40 40 H 0.96998 * 120.00382 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.47556 * 210.00318 * 23 13 11 42 42 H 1.09007 * 109.47157 * 330.00627 * 23 13 11 43 43 H 1.09002 * 109.47243 * 300.00147 * 24 23 13 44 44 H 1.08997 * 109.46971 * 59.99940 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.5847 -0.0773 -2.3951 7 1 1.0193 0.8495 -2.2979 8 6 1.2111 -1.0157 -3.5442 9 6 2.5138 -0.2153 -3.6028 10 1 3.4464 -0.7613 -3.4606 11 6 2.5774 0.9408 -4.5674 12 8 1.9074 1.9323 -4.3706 13 7 3.3789 0.8728 -5.6489 14 6 3.4412 1.9968 -6.5863 15 6 4.5255 2.9507 -6.1556 16 1 5.1096 2.7408 -5.2717 17 6 4.7713 4.0918 -6.8894 18 7 4.0597 4.3476 -7.9654 19 14 6.1148 5.2745 -6.3551 20 1 7.4207 4.5675 -6.3432 21 1 6.1780 6.4138 -7.3054 22 1 5.8143 5.7821 -4.9923 23 6 4.1887 -0.3247 -5.8863 24 6 3.3918 -1.3198 -6.7323 25 6 4.2052 -2.5234 -6.9703 26 7 4.8335 -3.4514 -7.1553 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2493 34 1 3.1300 -0.7217 1.2491 35 1 1.6766 -0.2074 2.1393 36 1 1.2873 -2.0880 -3.3635 37 1 0.4001 -0.7061 -4.2034 38 1 3.6616 1.6240 -7.5865 39 1 2.4829 2.5161 -6.5950 40 1 4.2328 5.1502 -8.4819 41 1 5.1010 -0.0477 -6.4146 42 1 4.4466 -0.7840 -4.9320 43 1 2.4795 -1.5970 -6.2040 44 1 3.1338 -0.8606 -7.6865 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596892217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:42 Heat of formation + Delta-G solvation = -53.018263 kcal Electronic energy + Delta-G solvation = -23987.776240 eV Core-core repulsion = 20519.583845 eV Total energy + Delta-G solvation = -3468.192395 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17020 -39.84046 -38.01072 -36.93196 -36.45528 -34.82532 -33.46130 -32.14766 -29.46375 -28.35226 -28.24432 -26.01609 -25.30544 -23.44455 -23.12906 -20.88536 -19.73551 -18.90330 -18.38858 -18.17583 -17.42765 -17.00341 -16.54429 -16.14381 -15.79522 -15.74323 -15.49674 -14.95586 -14.61059 -14.40121 -14.21015 -14.01820 -13.72988 -13.56497 -13.44019 -13.28697 -13.20432 -13.00819 -12.92766 -12.80155 -12.77130 -12.68104 -12.61737 -12.52269 -12.17661 -11.95198 -11.73211 -11.70674 -11.56397 -11.29043 -10.61266 -10.58530 -10.08030 -9.48875 -8.18413 -6.30769 1.39583 1.42051 1.48903 1.61843 1.76236 1.85244 2.15687 2.40906 2.61611 2.95781 3.11806 3.17088 3.74878 3.78671 3.91639 3.97482 4.05016 4.08931 4.15002 4.16698 4.23893 4.44969 4.59258 4.65659 4.72864 4.83508 4.83896 4.86081 4.95540 4.95988 4.97384 5.06112 5.11036 5.15210 5.20749 5.33691 5.35352 5.41659 5.60219 5.87224 6.12411 6.33247 6.61093 6.72572 6.80109 7.32760 7.49499 8.88107 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.004795 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.234297 B = 5837.929658 C = 7659.806892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 C -0.179 4.179 4 C -0.134 4.134 5 O -0.353 6.353 6 C 0.044 3.956 7 H 0.108 0.892 8 C -0.130 4.130 9 C -0.198 4.198 10 H 0.143 0.857 11 C 0.534 3.466 12 O -0.589 6.589 13 N -0.592 5.592 14 C 0.260 3.740 15 C -0.543 4.543 16 H 0.051 0.949 17 C 0.014 3.986 18 N -0.924 5.924 19 Si 0.956 3.044 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.115 3.885 24 C -0.035 4.035 25 C 0.247 3.753 26 N -0.489 5.489 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.036 0.964 39 H 0.006 0.994 40 H 0.266 0.734 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.136 0.864 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.515 -12.279 13.907 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.062 3.938 3 C -0.237 4.237 4 C -0.191 4.191 5 O -0.272 6.272 6 C -0.014 4.014 7 H 0.125 0.875 8 C -0.167 4.167 9 C -0.219 4.219 10 H 0.160 0.840 11 C 0.323 3.677 12 O -0.470 6.470 13 N -0.321 5.321 14 C 0.139 3.861 15 C -0.581 4.581 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.564 5.564 19 Si 0.782 3.218 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.206 1.206 23 C -0.010 4.010 24 C -0.077 4.077 25 C -0.071 4.071 26 N -0.167 5.167 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.054 0.946 39 H 0.024 0.976 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.154 0.846 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.810 -13.177 13.577 19.792 hybrid contribution 0.504 1.790 -0.230 1.873 sum -5.306 -11.388 13.347 18.330 Atomic orbital electron populations 1.22433 0.94322 1.03287 1.03008 1.21790 0.94292 0.91871 0.85890 1.22486 1.01689 0.96787 1.02719 1.21775 1.01681 1.01075 0.94534 1.87848 1.74062 1.52821 1.12486 1.22444 0.99374 0.98348 0.81279 0.87471 1.23535 0.94538 0.99577 0.99067 1.22715 0.99514 0.99931 0.99759 0.83986 1.20107 0.78693 0.87385 0.81480 1.90644 1.46091 1.35129 1.75165 1.47992 1.42220 1.17375 1.24506 1.18835 0.95646 0.83680 0.87968 1.21709 1.18379 1.07243 1.10808 0.93115 1.25693 0.98660 0.99251 0.94972 1.70007 1.41414 1.27544 1.17436 0.85637 0.79825 0.78558 0.77817 1.18874 1.20527 1.20573 1.21507 0.93900 0.84208 1.01379 1.19801 0.97227 0.86093 1.04529 1.29130 0.92679 0.93712 0.91539 1.81237 1.11063 1.13566 1.10823 0.93046 0.91007 0.89972 0.89664 0.92757 0.93815 0.91238 0.92366 0.89111 0.84724 0.87188 0.94571 0.97594 0.92503 0.89892 0.88068 0.84640 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 8.38 71.98 0.60 -2.31 16 2 C 0.10 1.99 1.11 -10.79 -0.01 1.98 16 3 C -0.18 -3.99 8.38 71.98 0.60 -3.39 16 4 C -0.13 -2.02 8.84 71.98 0.64 -1.39 16 5 O -0.35 -8.55 10.24 -148.98 -1.53 -10.08 16 6 C 0.04 1.14 4.47 30.59 0.14 1.28 16 7 H 0.11 3.19 5.15 -2.38 -0.01 3.17 16 8 C -0.13 -2.63 10.18 30.60 0.31 -2.31 16 9 C -0.20 -5.28 5.24 -11.54 -0.06 -5.34 16 10 H 0.14 3.29 6.44 -2.39 -0.02 3.27 16 11 C 0.53 20.08 7.46 87.66 0.65 20.73 16 12 O -0.59 -28.19 15.84 -3.03 -0.05 -28.24 16 13 N -0.59 -21.98 2.46 -826.16 -2.03 -24.01 16 14 C 0.26 12.69 5.16 85.63 0.44 13.13 16 15 C -0.54 -29.69 9.39 25.60 0.24 -29.45 16 16 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 17 C 0.01 0.76 5.46 84.65 0.46 1.22 16 18 N -0.92 -53.67 13.29 21.45 0.28 -53.39 16 19 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 C 0.11 3.01 5.19 86.38 0.45 3.46 16 24 C -0.04 -0.69 6.03 28.79 0.17 -0.52 16 25 C 0.25 5.64 15.43 89.45 1.38 7.02 16 26 N -0.49 -13.99 18.54 20.01 0.37 -13.62 16 27 H 0.05 0.99 6.71 -2.39 -0.02 0.97 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.18 6.53 -2.39 -0.02 1.16 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.04 1.74 8.07 -2.39 -0.02 1.72 16 39 H 0.01 0.34 7.42 -2.39 -0.02 0.32 16 40 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 42 H 0.10 2.19 6.00 -2.38 -0.01 2.18 16 43 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -72.19 372.01 6.08 -66.11 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.98 Total: 13.17 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.02 Total: 4.10 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -1.37 Total: -91.01 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.57 Total: -38.31 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.19 6.08 -66.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596892217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.093 kcal (2) G-P(sol) polarization free energy of solvation -72.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds