Wall clock time and date at job start Tue Mar 31 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.46815 * 2 1 4 4 N 1.30015 * 127.33733 * 269.68065 * 3 2 1 5 5 O 1.20661 * 112.29896 * 179.79634 * 4 3 2 6 6 C 1.33490 * 113.15908 * 0.50260 * 5 4 3 7 7 C 1.37361 * 106.34289 * 359.70405 * 6 5 4 8 8 C 1.47393 * 128.57080 * 180.02562 * 7 6 5 9 9 O 1.21602 * 120.00664 * 144.29677 * 8 7 6 10 10 N 1.34779 * 119.99473 * 324.29695 * 8 7 6 11 11 C 1.46496 * 120.00443 * 4.07810 * 10 8 7 12 12 C 1.50695 * 109.47506 * 94.59283 * 11 10 8 13 13 H 1.07998 * 119.99868 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00039 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99956 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47498 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47189 * 119.99967 * 16 14 12 19 19 H 1.48495 * 109.47239 * 239.99986 * 16 14 12 20 20 C 1.46500 * 119.99876 * 184.06990 * 10 8 7 21 21 C 1.53001 * 109.47191 * 90.00204 * 20 10 8 22 22 C 1.52999 * 109.47752 * 179.97438 * 21 20 10 23 23 C 1.52991 * 109.47402 * 175.00146 * 22 21 20 24 24 C 1.52994 * 109.46924 * 295.00353 * 22 21 20 25 25 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47676 * 299.99855 * 1 2 3 27 27 H 1.09000 * 109.47240 * 60.00222 * 1 2 3 28 28 H 1.09003 * 109.47492 * 240.00451 * 2 1 3 29 29 H 1.09000 * 109.47240 * 119.99778 * 2 1 3 30 30 H 1.07994 * 126.82991 * 179.67030 * 6 5 4 31 31 H 1.09002 * 109.47475 * 214.59934 * 11 10 8 32 32 H 1.09000 * 109.46703 * 334.59731 * 11 10 8 33 33 H 0.97003 * 119.99827 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.47597 * 210.00234 * 20 10 8 35 35 H 1.08994 * 109.47403 * 330.00502 * 20 10 8 36 36 H 1.09001 * 109.47340 * 300.00603 * 21 20 10 37 37 H 1.09008 * 109.46941 * 59.99931 * 21 20 10 38 38 H 1.09005 * 109.46588 * 54.99907 * 22 21 20 39 39 H 1.08997 * 109.47695 * 60.00105 * 23 22 21 40 40 H 1.08997 * 109.47570 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.47204 * 299.99913 * 23 22 21 42 42 H 1.09000 * 109.47408 * 299.99586 * 24 22 21 43 43 H 1.09007 * 109.47519 * 59.99530 * 24 22 21 44 44 H 1.09003 * 109.47297 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3005 2.1624 -1.0337 5 8 2.6835 3.2630 -0.7207 6 6 2.7463 3.4408 0.6008 7 6 2.3296 2.2620 1.1697 8 6 2.2094 1.9235 2.5992 9 8 1.3042 1.2066 2.9804 10 7 3.1029 2.4087 3.4840 11 6 4.1399 3.3434 3.0401 12 6 3.6728 4.7577 3.2691 13 1 2.7008 4.9419 3.7024 14 6 4.4863 5.8166 2.9254 15 7 5.6697 5.5923 2.3974 16 14 3.9075 7.5697 3.2100 17 1 2.5501 7.5514 3.8120 18 1 4.8475 8.2581 4.1307 19 1 3.8651 8.2935 1.9140 20 6 3.0371 2.0014 4.8897 21 6 3.8935 0.7509 5.0990 22 6 3.8253 0.3258 6.5672 23 6 4.5788 -0.9928 6.7519 24 6 4.4657 1.4060 7.4411 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0625 4.3337 1.1196 31 1 5.0547 3.1668 3.6059 32 1 4.3346 3.1926 1.9783 33 1 6.2418 6.3373 2.1553 34 1 3.4118 2.8080 5.5197 35 1 2.0032 1.7824 5.1565 36 1 3.5188 -0.0558 4.4690 37 1 4.9275 0.9698 4.8322 38 1 2.7834 0.1929 6.8588 39 1 5.6206 -0.8600 6.4602 40 1 4.5299 -1.2959 7.7977 41 1 4.1225 -1.7624 6.1293 42 1 5.5075 1.5390 7.1494 43 1 3.9288 2.3455 7.3095 44 1 4.4167 1.1034 8.4871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597146689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:06 Heat of formation + Delta-G solvation = -4.130467 kcal Electronic energy + Delta-G solvation = -24694.648664 eV Core-core repulsion = 21228.576203 eV Total energy + Delta-G solvation = -3466.072461 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.29886 -39.13502 -36.59909 -35.00005 -34.73407 -32.76107 -31.73469 -30.77179 -29.09754 -27.27328 -26.98878 -24.73728 -23.85746 -23.25696 -22.17034 -20.26803 -19.77986 -18.97015 -17.15469 -16.94067 -16.56637 -16.14782 -15.56967 -15.03318 -14.66580 -14.33024 -14.23813 -13.95695 -13.64670 -13.40707 -13.00235 -12.63553 -12.51440 -12.38082 -12.27383 -12.09290 -11.70831 -11.52705 -11.33397 -11.22117 -11.17673 -10.95680 -10.86897 -10.71885 -10.57366 -10.50278 -10.33495 -10.15978 -9.85577 -9.51421 -9.34378 -9.00928 -8.67589 -7.82072 -6.37130 -4.48588 1.86609 2.29658 3.11639 3.22240 3.25493 3.47824 3.71036 3.98412 4.19765 4.50853 4.82551 4.95016 5.04215 5.08950 5.12794 5.37112 5.46691 5.50977 5.57597 5.70561 5.71588 5.72036 5.83756 5.87751 5.97814 5.99278 5.99994 6.09288 6.15036 6.23197 6.31906 6.36940 6.40443 6.43048 6.49641 6.57989 6.63309 6.68547 7.04797 7.41813 7.58309 7.85339 8.20285 8.62086 8.73785 8.89578 9.21145 10.67332 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.008277 B = 0.007858 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3382.192236 B = 3562.377038 C = 6361.368064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C 0.058 3.942 4 N -0.374 5.374 5 O 0.080 5.920 6 C 0.018 3.982 7 C -0.257 4.257 8 C 0.595 3.405 9 O -0.562 6.562 10 N -0.587 5.587 11 C 0.225 3.775 12 C -0.551 4.551 13 H 0.067 0.933 14 C 0.068 3.932 15 N -0.880 5.880 16 Si 0.894 3.106 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.122 3.878 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.145 4.145 24 C -0.150 4.150 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.252 0.748 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.269 0.731 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 -7.989 2.595 8.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.105 4.105 4 N -0.083 5.083 5 O 0.023 5.977 6 C -0.062 4.062 7 C -0.265 4.265 8 C 0.383 3.617 9 O -0.443 6.443 10 N -0.316 5.316 11 C 0.105 3.895 12 C -0.589 4.589 13 H 0.085 0.915 14 C -0.137 4.137 15 N -0.517 5.517 16 Si 0.721 3.279 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.001 4.001 21 C -0.166 4.166 22 C -0.112 4.112 23 C -0.202 4.202 24 C -0.207 4.207 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.267 0.733 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.038 -8.393 1.411 9.037 hybrid contribution 0.052 1.169 1.039 1.565 sum -2.986 -7.223 2.450 8.191 Atomic orbital electron populations 1.21670 0.93877 1.01839 1.02627 1.19845 0.96636 0.87877 1.03170 1.24725 1.00049 0.98651 0.87103 1.73548 1.17549 0.93166 1.24046 1.84525 1.62697 1.26091 1.24383 1.27895 0.94211 1.02049 0.82088 1.22210 1.13073 0.95659 0.95522 1.16866 0.81647 0.79712 0.83507 1.90679 1.33942 1.39901 1.79789 1.48032 1.31229 1.44592 1.07771 1.19706 0.86108 0.86854 0.96834 1.21601 1.03558 0.90388 1.43389 0.91528 1.25012 0.94584 0.99628 0.94504 1.69939 1.08786 1.32484 1.40488 0.86484 0.79174 0.83852 0.78422 1.19428 1.20613 1.20429 1.21375 1.00320 0.96267 0.82160 1.21998 1.00881 0.98240 0.95524 1.21037 0.99831 0.95084 0.95247 1.21819 1.00408 0.96998 1.00982 1.21904 1.01131 0.98909 0.98738 0.92124 0.91312 0.92982 0.90576 0.89565 0.73282 0.94397 0.93881 0.92100 0.89964 0.90901 0.92098 0.91752 0.91299 0.92794 0.93046 0.92923 0.92605 0.92068 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 37.16 0.37 -1.61 16 2 C -0.04 -0.57 6.55 -27.88 -0.18 -0.75 16 3 C 0.06 1.07 6.84 -79.76 -0.55 0.53 16 4 N -0.37 -7.12 12.01 34.78 0.42 -6.70 16 5 O 0.08 1.53 11.06 18.66 0.21 1.74 16 6 C 0.02 0.36 9.96 30.41 0.30 0.66 16 7 C -0.26 -5.19 5.74 -102.89 -0.59 -5.78 16 8 C 0.59 12.50 7.65 -12.53 -0.10 12.41 16 9 O -0.56 -12.40 16.66 5.28 0.09 -12.31 16 10 N -0.59 -11.95 2.46 -176.35 -0.43 -12.38 16 11 C 0.22 5.00 4.70 -5.20 -0.02 4.97 16 12 C -0.55 -13.01 7.42 -34.44 -0.26 -13.26 16 13 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.07 1.63 5.36 -17.82 -0.10 1.54 16 15 N -0.88 -22.26 13.29 55.43 0.74 -21.53 16 16 Si 0.89 18.99 29.54 -169.99 -5.02 13.97 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 C 0.12 2.15 5.21 -4.04 -0.02 2.13 16 21 C -0.13 -1.96 5.01 -26.73 -0.13 -2.09 16 22 C -0.09 -1.17 2.92 -90.63 -0.26 -1.44 16 23 C -0.14 -1.61 9.19 37.15 0.34 -1.27 16 24 C -0.15 -1.81 8.95 37.15 0.33 -1.47 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.25 5.16 5.07 -52.49 -0.27 4.89 16 31 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 32 H 0.04 1.00 5.05 -51.93 -0.26 0.73 16 33 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 34 H 0.08 1.44 6.49 -51.93 -0.34 1.10 16 35 H 0.07 1.31 7.37 -51.93 -0.38 0.93 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.78 6.56 -51.93 -0.34 0.43 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -26.14 362.34 -6.46 -32.61 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.05 Total: 4.58 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.86 Total: -5.44 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.72 Total: -40.61 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.29 Total: -10.57 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -26.14 -6.46 -32.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.475 kcal (2) G-P(sol) polarization free energy of solvation -26.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds