Wall clock time and date at job start Tue Mar 31 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.46815 * 2 1 4 4 N 1.30015 * 127.33733 * 269.68065 * 3 2 1 5 5 O 1.20661 * 112.29896 * 179.79634 * 4 3 2 6 6 C 1.33490 * 113.15908 * 0.50260 * 5 4 3 7 7 C 1.37361 * 106.34289 * 359.70405 * 6 5 4 8 8 C 1.47393 * 128.57080 * 180.02562 * 7 6 5 9 9 O 1.21602 * 120.00664 * 144.29677 * 8 7 6 10 10 N 1.34779 * 119.99473 * 324.29695 * 8 7 6 11 11 C 1.46496 * 120.00443 * 4.07810 * 10 8 7 12 12 C 1.50695 * 109.47506 * 94.59283 * 11 10 8 13 13 H 1.07998 * 119.99868 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00039 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99956 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47498 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47189 * 119.99967 * 16 14 12 19 19 H 1.48495 * 109.47239 * 239.99986 * 16 14 12 20 20 C 1.46500 * 119.99876 * 184.06990 * 10 8 7 21 21 C 1.53001 * 109.47191 * 90.00204 * 20 10 8 22 22 C 1.52999 * 109.47752 * 179.97438 * 21 20 10 23 23 C 1.52991 * 109.47402 * 175.00146 * 22 21 20 24 24 C 1.52994 * 109.46924 * 295.00353 * 22 21 20 25 25 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47676 * 299.99855 * 1 2 3 27 27 H 1.09000 * 109.47240 * 60.00222 * 1 2 3 28 28 H 1.09003 * 109.47492 * 240.00451 * 2 1 3 29 29 H 1.09000 * 109.47240 * 119.99778 * 2 1 3 30 30 H 1.07994 * 126.82991 * 179.67030 * 6 5 4 31 31 H 1.09002 * 109.47475 * 214.59934 * 11 10 8 32 32 H 1.09000 * 109.46703 * 334.59731 * 11 10 8 33 33 H 0.97003 * 119.99827 * 179.97438 * 15 14 12 34 34 H 1.08997 * 109.47597 * 210.00234 * 20 10 8 35 35 H 1.08994 * 109.47403 * 330.00502 * 20 10 8 36 36 H 1.09001 * 109.47340 * 300.00603 * 21 20 10 37 37 H 1.09008 * 109.46941 * 59.99931 * 21 20 10 38 38 H 1.09005 * 109.46588 * 54.99907 * 22 21 20 39 39 H 1.08997 * 109.47695 * 60.00105 * 23 22 21 40 40 H 1.08997 * 109.47570 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.47204 * 299.99913 * 23 22 21 42 42 H 1.09000 * 109.47408 * 299.99586 * 24 22 21 43 43 H 1.09007 * 109.47519 * 59.99530 * 24 22 21 44 44 H 1.09003 * 109.47297 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3005 2.1624 -1.0337 5 8 2.6835 3.2630 -0.7207 6 6 2.7463 3.4408 0.6008 7 6 2.3296 2.2620 1.1697 8 6 2.2094 1.9235 2.5992 9 8 1.3042 1.2066 2.9804 10 7 3.1029 2.4087 3.4840 11 6 4.1399 3.3434 3.0401 12 6 3.6728 4.7577 3.2691 13 1 2.7008 4.9419 3.7024 14 6 4.4863 5.8166 2.9254 15 7 5.6697 5.5923 2.3974 16 14 3.9075 7.5697 3.2100 17 1 2.5501 7.5514 3.8120 18 1 4.8475 8.2581 4.1307 19 1 3.8651 8.2935 1.9140 20 6 3.0371 2.0014 4.8897 21 6 3.8935 0.7509 5.0990 22 6 3.8253 0.3258 6.5672 23 6 4.5788 -0.9928 6.7519 24 6 4.4657 1.4060 7.4411 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0625 4.3337 1.1196 31 1 5.0547 3.1668 3.6059 32 1 4.3346 3.1926 1.9783 33 1 6.2418 6.3373 2.1553 34 1 3.4118 2.8080 5.5197 35 1 2.0032 1.7824 5.1565 36 1 3.5188 -0.0558 4.4690 37 1 4.9275 0.9698 4.8322 38 1 2.7834 0.1929 6.8588 39 1 5.6206 -0.8600 6.4602 40 1 4.5299 -1.2959 7.7977 41 1 4.1225 -1.7624 6.1293 42 1 5.5075 1.5390 7.1494 43 1 3.9288 2.3455 7.3095 44 1 4.4167 1.1034 8.4871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597146689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:06 Heat of formation + Delta-G solvation = -15.746291 kcal Electronic energy + Delta-G solvation = -24695.152364 eV Core-core repulsion = 21228.576203 eV Total energy + Delta-G solvation = -3466.576161 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.82935 -40.77499 -37.87676 -36.54497 -36.17133 -34.55311 -33.24239 -32.14926 -30.53734 -28.99258 -27.97497 -26.17361 -25.20632 -24.99174 -23.65081 -21.72476 -20.88418 -20.56508 -18.72802 -18.67611 -18.27981 -17.71471 -17.15418 -16.44036 -16.25074 -15.78890 -15.61501 -15.23190 -14.89154 -14.65060 -14.43926 -14.34343 -13.92838 -13.72675 -13.63189 -13.24436 -13.12484 -12.93034 -12.74024 -12.68181 -12.55692 -12.49232 -12.27679 -12.08915 -11.87288 -11.84799 -11.61587 -11.55136 -11.39953 -11.07691 -10.93334 -10.74470 -10.43063 -9.50361 -8.24574 -6.41899 0.25522 0.79003 1.41951 1.48102 1.56587 1.87577 2.07274 2.34066 2.47600 3.04630 3.07230 3.38817 3.77683 3.94072 4.00742 4.08686 4.10576 4.28766 4.32431 4.33640 4.42320 4.59029 4.70070 4.75762 4.78861 4.84124 4.85646 4.90663 4.94958 4.97831 5.05597 5.13401 5.13747 5.15847 5.18200 5.30003 5.33474 5.48976 5.53383 5.63643 5.78080 5.98413 6.47169 6.75313 7.16052 7.22118 7.33039 8.79659 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.008277 B = 0.007858 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3382.192236 B = 3562.377038 C = 6361.368064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.039 4.039 3 C 0.063 3.937 4 N -0.378 5.378 5 O 0.077 5.923 6 C 0.023 3.977 7 C -0.276 4.276 8 C 0.592 3.408 9 O -0.574 6.574 10 N -0.589 5.589 11 C 0.240 3.760 12 C -0.552 4.552 13 H 0.058 0.942 14 C 0.034 3.966 15 N -0.907 5.907 16 Si 0.949 3.051 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.274 1.274 20 C 0.120 3.880 21 C -0.117 4.117 22 C -0.089 4.089 23 C -0.142 4.142 24 C -0.148 4.148 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.243 0.757 31 H 0.022 0.978 32 H 0.035 0.965 33 H 0.272 0.728 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 -8.676 2.960 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 C -0.100 4.100 4 N -0.089 5.089 5 O 0.023 5.977 6 C -0.058 4.058 7 C -0.283 4.283 8 C 0.381 3.619 9 O -0.457 6.457 10 N -0.317 5.317 11 C 0.120 3.880 12 C -0.591 4.591 13 H 0.076 0.924 14 C -0.168 4.168 15 N -0.545 5.545 16 Si 0.775 3.225 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.200 1.200 20 C -0.002 4.002 21 C -0.156 4.156 22 C -0.108 4.108 23 C -0.199 4.199 24 C -0.205 4.205 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.258 0.742 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.475 -9.074 1.787 9.879 hybrid contribution 0.180 1.354 0.923 1.648 sum -3.295 -7.720 2.710 8.820 Atomic orbital electron populations 1.21626 0.92673 1.03485 1.01547 1.20045 0.97561 0.85907 1.04205 1.25237 0.98886 0.99795 0.86103 1.73539 1.18071 0.93136 1.24128 1.84518 1.62905 1.26424 1.23892 1.27645 0.94047 1.01694 0.82423 1.22327 1.13930 0.96394 0.95682 1.16986 0.81485 0.79565 0.83904 1.90661 1.34354 1.40562 1.80106 1.48076 1.30626 1.44198 1.08827 1.19394 0.85870 0.86782 0.96003 1.21646 1.03125 0.91130 1.43164 0.92385 1.25572 0.94534 1.02565 0.94163 1.70012 1.09673 1.33491 1.41323 0.85624 0.78497 0.80097 0.78294 1.19508 1.20582 1.19952 1.21530 1.00682 0.97339 0.80697 1.21897 0.99516 0.96611 0.97560 1.21027 1.00540 0.96150 0.93115 1.21790 0.99987 0.95886 1.02220 1.21886 1.00516 0.98251 0.99843 0.89166 0.93710 0.92641 0.88169 0.89816 0.74155 0.95979 0.94732 0.91901 0.90008 0.91134 0.93078 0.92667 0.90877 0.92893 0.91206 0.92884 0.93100 0.93080 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.89 71.98 0.71 -2.81 16 2 C -0.04 -1.13 6.55 29.85 0.20 -0.94 16 3 C 0.06 2.30 6.84 45.16 0.31 2.61 16 4 N -0.38 -14.11 12.01 -44.77 -0.54 -14.64 16 5 O 0.08 2.96 11.06 77.01 0.85 3.81 16 6 C 0.02 0.91 9.96 67.61 0.67 1.59 16 7 C -0.28 -11.17 5.74 -18.74 -0.11 -11.28 16 8 C 0.59 25.09 7.65 86.65 0.66 25.75 16 9 O -0.57 -25.37 16.66 -4.04 -0.07 -25.43 16 10 N -0.59 -24.29 2.46 -830.11 -2.04 -26.33 16 11 C 0.24 10.88 4.70 85.63 0.40 11.28 16 12 C -0.55 -26.31 7.42 25.60 0.19 -26.12 16 13 H 0.06 2.84 7.81 -2.91 -0.02 2.81 16 14 C 0.03 1.65 5.36 84.66 0.45 2.10 16 15 N -0.91 -46.05 13.29 21.45 0.28 -45.77 16 16 Si 0.95 38.72 29.54 68.60 2.03 40.75 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 18 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 C 0.12 4.26 5.21 86.38 0.45 4.71 16 21 C -0.12 -3.58 5.01 30.59 0.15 -3.43 16 22 C -0.09 -2.15 2.92 -10.80 -0.03 -2.18 16 23 C -0.14 -2.88 9.19 71.98 0.66 -2.22 16 24 C -0.15 -3.38 8.95 71.98 0.64 -2.74 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.24 10.16 5.07 -2.91 -0.01 10.15 16 31 H 0.02 1.07 8.11 -2.39 -0.02 1.05 16 32 H 0.03 1.64 5.05 -2.39 -0.01 1.63 16 33 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 34 H 0.08 2.90 6.49 -2.39 -0.02 2.88 16 35 H 0.07 2.54 7.37 -2.39 -0.02 2.52 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.05 1.26 6.56 -2.38 -0.02 1.24 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -54.51 362.34 6.87 -47.65 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.98 Total: 23.63 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 5.37 Total: -3.67 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -2.29 Total: -86.74 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.78 Total: -21.62 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -54.51 6.87 -47.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597146689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.901 kcal (2) G-P(sol) polarization free energy of solvation -54.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds