Wall clock time and date at job start Tue Mar 31 2020 07:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46952 * 2 1 4 4 C 1.52998 * 109.47270 * 240.00154 * 2 1 3 5 5 C 1.52995 * 109.47137 * 119.99932 * 2 1 3 6 6 N 1.46499 * 109.47048 * 54.26317 * 5 2 1 7 7 C 1.46505 * 120.00383 * 275.81288 * 6 5 2 8 8 C 1.50693 * 109.47010 * 270.00238 * 7 6 5 9 9 H 1.08006 * 120.00129 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00303 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99706 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00405 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47147 * 90.00487 * 12 10 8 14 14 H 1.48498 * 109.46983 * 210.00171 * 12 10 8 15 15 H 1.48502 * 109.47125 * 329.99902 * 12 10 8 16 16 C 1.34777 * 119.99988 * 95.81492 * 6 5 2 17 17 O 1.21282 * 120.00225 * 185.44659 * 16 6 5 18 18 C 1.50705 * 119.99755 * 5.43916 * 16 6 5 19 19 C 1.53003 * 109.46996 * 174.42463 * 18 16 6 20 20 C 1.50700 * 109.47176 * 180.02562 * 19 18 16 21 21 C 1.41378 * 126.80371 * 124.70995 * 20 19 18 22 22 C 1.35442 * 103.98692 * 180.26190 * 21 20 19 23 23 O 1.34043 * 106.44775 * 359.97438 * 22 21 20 24 24 N 1.20920 * 111.56404 * 0.02562 * 23 22 21 25 25 H 1.08991 * 109.47005 * 300.00157 * 1 2 3 26 26 H 1.09000 * 109.46927 * 60.00129 * 1 2 3 27 27 H 1.08998 * 109.46875 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46874 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47199 * 299.99704 * 3 2 1 30 30 H 1.08996 * 109.46951 * 60.00266 * 3 2 1 31 31 H 1.09000 * 109.46978 * 304.13125 * 4 2 1 32 32 H 1.08998 * 109.47549 * 64.12543 * 4 2 1 33 33 H 1.08996 * 109.47399 * 184.13270 * 4 2 1 34 34 H 1.08998 * 109.46918 * 294.26596 * 5 2 1 35 35 H 1.09000 * 109.47204 * 174.26732 * 5 2 1 36 36 H 1.08998 * 109.46523 * 29.99473 * 7 6 5 37 37 H 1.08997 * 109.47220 * 149.99907 * 7 6 5 38 38 H 0.96989 * 119.99997 * 179.97438 * 11 10 8 39 39 H 1.08992 * 109.46970 * 54.42745 * 18 16 6 40 40 H 1.08999 * 109.47330 * 294.42490 * 18 16 6 41 41 H 1.09004 * 109.47054 * 59.99630 * 19 18 16 42 42 H 1.09009 * 109.47070 * 300.00310 * 19 18 16 43 43 H 1.08002 * 128.00362 * 0.24278 * 21 20 19 44 44 H 1.08004 * 126.77905 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 1.4422 -2.0568 1.3202 7 6 0.1134 -2.2342 1.9110 8 6 0.2513 -2.4927 3.3892 9 1 1.2309 -2.5225 3.8432 10 6 -0.8730 -2.6914 4.1622 11 7 -2.0658 -2.6558 3.6094 12 14 -0.7020 -3.0127 5.9944 13 1 -0.7294 -1.7218 6.7279 14 1 -1.8261 -3.8672 6.4541 15 1 0.5854 -3.7045 6.2576 16 6 2.1148 -3.1224 0.8421 17 8 1.5819 -4.2114 0.8101 18 6 3.5290 -2.9607 0.3470 19 6 4.1052 -4.3330 -0.0076 20 6 5.5195 -4.1714 -0.5021 21 6 6.6730 -4.8110 0.0070 22 6 7.6792 -4.3337 -0.7640 23 8 7.1180 -3.4882 -1.6397 24 7 5.9219 -3.4113 -1.4792 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6176 -1.7253 -1.2870 32 1 1.7384 -0.1665 -2.1377 33 1 3.1275 -0.7858 -1.2130 34 1 1.7630 -0.1515 2.1362 35 1 3.1252 -0.8110 1.1994 36 1 -0.4775 -1.3318 1.7537 37 1 -0.3841 -3.0813 1.4388 38 1 -2.8567 -2.7959 4.1530 39 1 4.1367 -2.5021 1.1269 40 1 3.5336 -2.3249 -0.5383 41 1 3.4973 -4.7918 -0.7875 42 1 4.1006 -4.9689 0.8778 43 1 6.7371 -5.5166 0.8222 44 1 8.7269 -4.5848 -0.6881 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597161103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:04 Heat of formation + Delta-G solvation = 11.921049 kcal Electronic energy + Delta-G solvation = -24562.985338 eV Core-core repulsion = 21097.608923 eV Total energy + Delta-G solvation = -3465.376415 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.99150 -39.56030 -37.07847 -35.27320 -33.82324 -32.43707 -32.09680 -31.11079 -28.12500 -27.14578 -26.74609 -25.69744 -24.86172 -23.20155 -22.42094 -20.68173 -19.22656 -17.97294 -17.80206 -17.49463 -16.60838 -16.26623 -15.44908 -15.31640 -14.88936 -14.38071 -14.12987 -13.89956 -13.65872 -13.46356 -12.94433 -12.86661 -12.45177 -12.37283 -12.17377 -11.96266 -11.73030 -11.50486 -11.31254 -11.28632 -11.20884 -10.98206 -10.81885 -10.69831 -10.53736 -10.34180 -10.13844 -10.10998 -10.02073 -9.70904 -9.52139 -8.84736 -8.39749 -7.56654 -6.02333 -4.06603 1.41760 2.17897 3.18330 3.30038 3.36664 3.39591 3.47201 3.93319 4.18965 4.44185 4.52701 5.03697 5.05682 5.07299 5.08402 5.19457 5.26026 5.31212 5.35313 5.43453 5.58303 5.65406 5.76522 5.77028 5.83533 5.91643 5.99077 6.03507 6.12839 6.17485 6.21399 6.25420 6.29865 6.38387 6.47325 6.63268 6.81625 7.15085 7.49447 7.60397 7.94778 8.21836 8.27731 8.47794 8.92443 9.13303 9.58126 11.05412 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.004632 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.172208 B = 6043.052991 C = 7406.475833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.143 4.143 5 C 0.120 3.880 6 N -0.592 5.592 7 C 0.237 3.763 8 C -0.526 4.526 9 H 0.055 0.945 10 C 0.061 3.939 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.509 3.491 17 O -0.547 6.547 18 C -0.146 4.146 19 C -0.027 4.027 20 C 0.025 3.975 21 C -0.231 4.231 22 C -0.066 4.066 23 O 0.095 5.905 24 N -0.364 5.364 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.263 0.737 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.171 0.829 44 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.789 2.972 -8.668 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.195 4.195 4 C -0.200 4.200 5 C -0.005 4.005 6 N -0.322 5.322 7 C 0.118 3.882 8 C -0.565 4.565 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.296 3.704 17 O -0.425 6.425 18 C -0.187 4.187 19 C -0.066 4.066 20 C -0.134 4.134 21 C -0.252 4.252 22 C -0.148 4.148 23 O 0.029 5.971 24 N -0.069 5.069 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.189 0.811 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 15.657 3.209 -9.473 18.579 hybrid contribution 0.378 -0.734 1.850 2.026 sum 16.035 2.475 -7.623 17.926 Atomic orbital electron populations 1.22043 0.93834 1.03202 1.00885 1.20994 0.96948 0.95087 0.95751 1.21802 1.00508 0.95386 1.01758 1.22015 1.00251 1.00721 0.96980 1.21543 0.96877 0.84652 0.97408 1.48127 1.20517 1.05342 1.58213 1.19506 0.77526 0.98517 0.92615 1.21471 0.92845 1.48989 0.93198 0.92642 1.24914 0.95142 0.95283 0.98704 1.69930 0.97578 1.49952 1.35874 0.86536 0.77766 0.78122 0.85224 1.20695 1.21126 1.19980 1.20188 0.87320 0.84667 0.78217 1.90658 1.69776 1.25781 1.56281 1.21920 0.95283 0.98272 1.03221 1.19776 0.86610 0.97824 1.02376 1.23830 0.99003 0.96141 0.94422 1.22821 0.91393 1.06107 1.04868 1.25987 1.01200 0.94999 0.92597 1.84840 1.15535 1.49960 1.46752 1.73838 0.92533 1.21357 1.19142 0.92263 0.93788 0.91017 0.92951 0.92783 0.92453 0.92452 0.92948 0.92690 0.90239 0.91574 0.93653 0.94021 0.92783 0.89717 0.88158 0.89047 0.88937 0.81134 0.76921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 6.98 37.16 0.26 -2.06 16 2 C -0.09 -1.25 0.85 -154.51 -0.13 -1.38 16 3 C -0.14 -1.61 8.47 37.16 0.31 -1.30 16 4 C -0.14 -1.97 6.84 37.16 0.25 -1.72 16 5 C 0.12 1.98 4.58 -4.04 -0.02 1.96 16 6 N -0.59 -12.31 2.00 -175.06 -0.35 -12.66 16 7 C 0.24 6.08 3.93 -5.19 -0.02 6.06 16 8 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 9 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 12 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.51 10.50 6.40 -10.98 -0.07 10.43 16 17 O -0.55 -13.53 15.54 5.56 0.09 -13.45 16 18 C -0.15 -2.29 4.03 -27.88 -0.11 -2.40 16 19 C -0.03 -0.40 5.12 -27.88 -0.14 -0.54 16 20 C 0.02 0.32 6.59 -82.10 -0.54 -0.22 16 21 C -0.23 -2.28 11.12 -39.39 -0.44 -2.72 16 22 C -0.07 -0.53 12.30 29.73 0.37 -0.17 16 23 O 0.10 1.06 11.20 17.17 0.19 1.26 16 24 N -0.36 -4.93 12.06 33.42 0.40 -4.53 16 25 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.38 5.76 -51.93 -0.30 1.08 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.92 6.74 -51.93 -0.35 0.57 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.70 6.49 -51.93 -0.34 0.37 16 34 H 0.08 1.38 8.11 -51.93 -0.42 0.95 16 35 H 0.07 0.95 6.11 -51.93 -0.32 0.63 16 36 H 0.05 1.16 5.32 -51.93 -0.28 0.88 16 37 H 0.04 1.23 7.35 -51.93 -0.38 0.84 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.08 1.23 7.34 -51.93 -0.38 0.85 16 40 H 0.10 1.47 4.67 -51.93 -0.24 1.23 16 41 H 0.09 1.41 8.04 -51.93 -0.42 1.00 16 42 H 0.09 1.35 8.14 -51.92 -0.42 0.92 16 43 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.21 0.69 8.06 -52.48 -0.42 0.26 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -33.20 351.73 -6.11 -39.31 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.75 Total: 1.20 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -0.70 Total: -7.52 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.79 Total: -42.88 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.28 Total: -12.19 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.20 -6.11 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.230 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds