Wall clock time and date at job start Tue Mar 31 2020 07:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46952 * 2 1 4 4 C 1.52998 * 109.47270 * 240.00154 * 2 1 3 5 5 C 1.52995 * 109.47137 * 119.99932 * 2 1 3 6 6 N 1.46499 * 109.47048 * 54.26317 * 5 2 1 7 7 C 1.46505 * 120.00383 * 275.81288 * 6 5 2 8 8 C 1.50693 * 109.47010 * 270.00238 * 7 6 5 9 9 H 1.08006 * 120.00129 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00303 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99706 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00405 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47147 * 90.00487 * 12 10 8 14 14 H 1.48498 * 109.46983 * 210.00171 * 12 10 8 15 15 H 1.48502 * 109.47125 * 329.99902 * 12 10 8 16 16 C 1.34777 * 119.99988 * 95.81492 * 6 5 2 17 17 O 1.21282 * 120.00225 * 185.44659 * 16 6 5 18 18 C 1.50705 * 119.99755 * 5.43916 * 16 6 5 19 19 C 1.53003 * 109.46996 * 174.42463 * 18 16 6 20 20 C 1.50700 * 109.47176 * 180.02562 * 19 18 16 21 21 C 1.41378 * 126.80371 * 124.70995 * 20 19 18 22 22 C 1.35442 * 103.98692 * 180.26190 * 21 20 19 23 23 O 1.34043 * 106.44775 * 359.97438 * 22 21 20 24 24 N 1.20920 * 111.56404 * 0.02562 * 23 22 21 25 25 H 1.08991 * 109.47005 * 300.00157 * 1 2 3 26 26 H 1.09000 * 109.46927 * 60.00129 * 1 2 3 27 27 H 1.08998 * 109.46875 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46874 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47199 * 299.99704 * 3 2 1 30 30 H 1.08996 * 109.46951 * 60.00266 * 3 2 1 31 31 H 1.09000 * 109.46978 * 304.13125 * 4 2 1 32 32 H 1.08998 * 109.47549 * 64.12543 * 4 2 1 33 33 H 1.08996 * 109.47399 * 184.13270 * 4 2 1 34 34 H 1.08998 * 109.46918 * 294.26596 * 5 2 1 35 35 H 1.09000 * 109.47204 * 174.26732 * 5 2 1 36 36 H 1.08998 * 109.46523 * 29.99473 * 7 6 5 37 37 H 1.08997 * 109.47220 * 149.99907 * 7 6 5 38 38 H 0.96989 * 119.99997 * 179.97438 * 11 10 8 39 39 H 1.08992 * 109.46970 * 54.42745 * 18 16 6 40 40 H 1.08999 * 109.47330 * 294.42490 * 18 16 6 41 41 H 1.09004 * 109.47054 * 59.99630 * 19 18 16 42 42 H 1.09009 * 109.47070 * 300.00310 * 19 18 16 43 43 H 1.08002 * 128.00362 * 0.24278 * 21 20 19 44 44 H 1.08004 * 126.77905 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 7 1.4422 -2.0568 1.3202 7 6 0.1134 -2.2342 1.9110 8 6 0.2513 -2.4927 3.3892 9 1 1.2309 -2.5225 3.8432 10 6 -0.8730 -2.6914 4.1622 11 7 -2.0658 -2.6558 3.6094 12 14 -0.7020 -3.0127 5.9944 13 1 -0.7294 -1.7218 6.7279 14 1 -1.8261 -3.8672 6.4541 15 1 0.5854 -3.7045 6.2576 16 6 2.1148 -3.1224 0.8421 17 8 1.5819 -4.2114 0.8101 18 6 3.5290 -2.9607 0.3470 19 6 4.1052 -4.3330 -0.0076 20 6 5.5195 -4.1714 -0.5021 21 6 6.6730 -4.8110 0.0070 22 6 7.6792 -4.3337 -0.7640 23 8 7.1180 -3.4882 -1.6397 24 7 5.9219 -3.4113 -1.4792 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6176 -1.7253 -1.2870 32 1 1.7384 -0.1665 -2.1377 33 1 3.1275 -0.7858 -1.2130 34 1 1.7630 -0.1515 2.1362 35 1 3.1252 -0.8110 1.1994 36 1 -0.4775 -1.3318 1.7537 37 1 -0.3841 -3.0813 1.4388 38 1 -2.8567 -2.7959 4.1530 39 1 4.1367 -2.5021 1.1269 40 1 3.5336 -2.3249 -0.5383 41 1 3.4973 -4.7918 -0.7875 42 1 4.1006 -4.9689 0.8778 43 1 6.7371 -5.5166 0.8222 44 1 8.7269 -4.5848 -0.6881 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597161103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:04 Heat of formation + Delta-G solvation = -8.271092 kcal Electronic energy + Delta-G solvation = -24563.860935 eV Core-core repulsion = 21097.608923 eV Total energy + Delta-G solvation = -3466.252012 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.84854 -41.15285 -38.51757 -36.38141 -35.59429 -34.33353 -33.10524 -32.18816 -29.89930 -28.29002 -28.11626 -27.07531 -26.40125 -24.24921 -24.00184 -21.63644 -20.64286 -19.30463 -18.77372 -18.68115 -18.43173 -17.73659 -17.12228 -16.89555 -16.20707 -15.82931 -15.36990 -15.19611 -14.94589 -14.55206 -14.37043 -14.24489 -14.04736 -13.61276 -13.48430 -13.33471 -13.09188 -12.97622 -12.83431 -12.71854 -12.54301 -12.51991 -12.34726 -12.16262 -11.98789 -11.88291 -11.70866 -11.51999 -11.39660 -10.96813 -10.60634 -10.59165 -10.46306 -9.35266 -8.20434 -6.35061 0.69332 1.31806 1.35793 1.38595 1.48696 1.81333 2.30122 2.44628 2.56445 3.08569 3.21748 3.57440 3.76915 3.84467 3.87780 4.02271 4.09590 4.20376 4.33324 4.42588 4.52830 4.58269 4.62927 4.71176 4.77032 4.80036 4.91234 4.92516 4.93262 5.03570 5.06361 5.09541 5.13674 5.18987 5.21021 5.27161 5.35388 5.44069 5.52186 5.60590 5.89257 6.10864 6.71785 6.81089 7.29118 7.42288 7.48331 8.86096 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.004632 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.172208 B = 6043.052991 C = 7406.475833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.130 4.130 4 C -0.137 4.137 5 C 0.114 3.886 6 N -0.593 5.593 7 C 0.257 3.743 8 C -0.544 4.544 9 H 0.052 0.948 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.966 3.034 13 H -0.264 1.264 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.501 3.499 17 O -0.599 6.599 18 C -0.128 4.128 19 C -0.022 4.022 20 C 0.004 3.996 21 C -0.245 4.245 22 C -0.039 4.039 23 O 0.093 5.907 24 N -0.392 5.392 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.042 0.958 37 H -0.010 1.010 38 H 0.266 0.734 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.190 0.810 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.185 4.263 -8.363 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.187 4.187 4 C -0.194 4.194 5 C -0.009 4.009 6 N -0.323 5.323 7 C 0.136 3.864 8 C -0.583 4.583 9 H 0.070 0.930 10 C -0.190 4.190 11 N -0.568 5.568 12 Si 0.790 3.210 13 H -0.189 1.189 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.290 3.710 17 O -0.481 6.481 18 C -0.168 4.168 19 C -0.061 4.061 20 C -0.154 4.154 21 C -0.266 4.266 22 C -0.120 4.120 23 O 0.027 5.973 24 N -0.097 5.097 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.059 0.941 37 H 0.008 0.992 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.132 0.868 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.207 0.793 44 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 19.073 4.544 -9.180 21.650 hybrid contribution -0.655 -1.157 1.689 2.150 sum 18.418 3.387 -7.491 20.170 Atomic orbital electron populations 1.21967 0.95689 1.00664 1.01281 1.20975 0.95329 0.97083 0.94920 1.21746 1.01724 0.92729 1.02528 1.21962 1.01023 0.99119 0.97310 1.21854 0.98383 0.82328 0.98321 1.48093 1.19010 1.07505 1.57649 1.18952 0.79874 0.96092 0.91526 1.21768 0.92836 1.49266 0.94384 0.92977 1.25829 0.94702 0.94790 1.03715 1.70058 0.98378 1.50571 1.37773 0.85444 0.77677 0.78601 0.79263 1.18893 1.20752 1.19699 1.21098 0.89011 0.83644 0.77204 1.90623 1.71290 1.27820 1.58354 1.21821 0.91497 0.99531 1.03929 1.19578 0.87955 0.96861 1.01660 1.23679 0.98665 0.97640 0.95393 1.23109 0.90622 1.06827 1.06050 1.26869 1.02775 0.92326 0.90033 1.84794 1.14736 1.50469 1.47314 1.73833 0.93781 1.22363 1.19691 0.93501 0.91673 0.94986 0.90949 0.91339 0.92449 0.95472 0.91172 0.91037 0.91059 0.88571 0.94065 0.99168 0.92515 0.87762 0.86826 0.90953 0.89443 0.79302 0.71903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 6.98 71.98 0.50 -4.12 16 2 C -0.08 -2.29 0.85 -52.18 -0.04 -2.33 16 3 C -0.13 -2.67 8.47 71.98 0.61 -2.06 16 4 C -0.14 -3.62 6.84 71.98 0.49 -3.12 16 5 C 0.11 3.71 4.58 86.38 0.40 4.11 16 6 N -0.59 -25.68 2.00 -826.17 -1.65 -27.33 16 7 C 0.26 14.00 3.93 85.63 0.34 14.33 16 8 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 9 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 10 C 0.01 0.49 5.46 84.65 0.46 0.96 16 11 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 12 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 13 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 16 C 0.50 21.54 6.40 87.66 0.56 22.11 16 17 O -0.60 -31.68 15.54 -3.04 -0.05 -31.73 16 18 C -0.13 -3.96 4.03 29.85 0.12 -3.84 16 19 C -0.02 -0.65 5.12 29.85 0.15 -0.50 16 20 C 0.00 0.10 6.59 43.58 0.29 0.39 16 21 C -0.24 -4.21 11.12 22.40 0.25 -3.96 16 22 C -0.04 -0.47 12.30 67.17 0.83 0.35 16 23 O 0.09 1.83 11.20 71.60 0.80 2.63 16 24 N -0.39 -9.97 12.06 -49.57 -0.60 -10.56 16 25 H 0.05 1.64 7.71 -2.39 -0.02 1.62 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 27 H 0.03 1.30 5.76 -2.39 -0.01 1.29 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.03 0.87 6.74 -2.39 -0.02 0.85 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.65 6.49 -2.39 -0.02 1.63 16 34 H 0.07 2.45 8.11 -2.39 -0.02 2.43 16 35 H 0.10 2.55 6.11 -2.39 -0.01 2.53 16 36 H 0.04 2.26 5.32 -2.39 -0.01 2.25 16 37 H -0.01 -0.63 7.35 -2.39 -0.02 -0.65 16 38 H 0.27 15.26 8.31 -92.72 -0.77 14.49 16 39 H 0.10 2.84 7.34 -2.39 -0.02 2.82 16 40 H 0.11 3.23 4.67 -2.39 -0.01 3.22 16 41 H 0.07 2.37 8.04 -2.38 -0.02 2.35 16 42 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 43 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.27 0.17 8.06 -2.91 -0.02 0.14 16 Total: -1.00 -77.33 351.73 7.00 -70.33 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.99 Total: 14.98 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 5.19 Total: -9.12 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -1.96 Total: -94.34 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: 0.75 Total: -29.10 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -77.33 7.00 -70.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.060 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds