Wall clock time and date at job start Tue Mar 31 2020 07:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47306 * 2 1 4 4 C 1.52993 * 109.47327 * 300.84562 * 3 2 1 5 5 C 1.53001 * 109.47413 * 295.38717 * 4 3 2 6 6 C 1.53008 * 109.46836 * 60.84562 * 3 2 1 7 7 N 1.46500 * 109.47025 * 64.99952 * 6 3 2 8 8 C 1.46500 * 119.99949 * 269.99612 * 7 6 3 9 9 C 1.50698 * 109.47568 * 272.62157 * 8 7 6 10 10 H 1.08002 * 119.99667 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00312 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00001 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47208 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47025 * 120.00652 * 13 11 9 16 16 H 1.48502 * 109.47145 * 240.00289 * 13 11 9 17 17 C 1.34772 * 120.00266 * 89.99911 * 7 6 3 18 18 O 1.21612 * 119.99914 * 4.89973 * 17 7 6 19 19 C 1.47392 * 120.00143 * 184.89419 * 17 7 6 20 20 C 1.37361 * 128.57164 * 320.06968 * 19 17 7 21 21 O 1.33486 * 106.34865 * 180.24024 * 20 19 17 22 22 N 1.20659 * 113.15067 * 359.51411 * 21 20 19 23 23 C 1.30010 * 112.30680 * 0.50670 * 22 21 20 24 24 C 1.50699 * 127.33716 * 179.67438 * 23 22 21 25 25 H 1.08993 * 109.47363 * 183.33622 * 1 2 3 26 26 H 1.08996 * 109.46885 * 303.34074 * 1 2 3 27 27 H 1.09002 * 109.47159 * 63.33639 * 1 2 3 28 28 H 1.08999 * 109.46953 * 240.00249 * 2 1 3 29 29 H 1.08998 * 109.47100 * 120.00835 * 2 1 3 30 30 H 1.08999 * 109.47053 * 180.83852 * 3 2 1 31 31 H 1.08998 * 109.47669 * 55.39102 * 4 3 2 32 32 H 1.09007 * 109.47357 * 175.38976 * 4 3 2 33 33 H 1.08992 * 109.47445 * 185.83054 * 5 4 3 34 34 H 1.09003 * 109.46934 * 305.83249 * 5 4 3 35 35 H 1.09002 * 109.46484 * 65.82954 * 5 4 3 36 36 H 1.08995 * 109.46919 * 304.99715 * 6 3 2 37 37 H 1.09004 * 109.46986 * 184.99846 * 6 3 2 38 38 H 1.09004 * 109.46959 * 32.62393 * 8 7 6 39 39 H 1.09002 * 109.47497 * 152.61697 * 8 7 6 40 40 H 0.97001 * 119.99804 * 179.97438 * 12 11 9 41 41 H 1.08007 * 126.82356 * 359.97438 * 20 19 17 42 42 H 1.09005 * 109.47249 * 270.02868 * 24 23 22 43 43 H 1.08997 * 109.47138 * 30.02643 * 24 23 22 44 44 H 1.08999 * 109.47179 * 150.02824 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5128 2.1698 -1.2384 5 6 2.0978 1.5249 -2.4964 6 6 1.5475 2.1575 1.2598 7 7 2.1481 1.5340 2.4416 8 6 1.4695 0.4185 3.1060 9 6 0.4983 0.9565 4.1251 10 1 0.3965 2.0227 4.2637 11 6 -0.2609 0.0876 4.8798 12 7 -0.1372 -1.2108 4.7106 13 14 -1.4642 0.7544 6.1434 14 1 -1.4139 2.2385 6.1398 15 1 -2.8383 0.3052 5.8038 16 1 -1.0973 0.2496 7.4909 17 6 3.3249 1.9865 2.9177 18 8 3.8444 2.9680 2.4219 19 6 3.9823 1.2920 4.0393 20 6 3.4102 0.7486 5.1636 21 8 4.4105 0.2368 5.8843 22 7 5.4904 0.3793 5.3653 23 6 5.4133 1.0092 4.2306 24 6 6.5481 1.3728 3.3081 25 1 -0.3634 -1.0258 0.0598 26 1 -0.3633 0.5648 0.8585 27 1 -0.3633 0.4612 -0.9184 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 3.1299 1.4424 -0.0150 31 1 0.4255 2.0992 -1.2660 32 1 1.8078 3.2184 -1.1970 33 1 1.8060 2.1053 -3.3716 34 1 3.1850 1.5026 -2.4213 35 1 1.7193 0.5072 -2.5925 36 1 0.4619 2.0804 1.3204 37 1 1.8353 3.2080 1.2174 38 1 0.9294 -0.1712 2.3653 39 1 2.2071 -0.2109 3.6039 40 1 -0.6711 -1.8222 5.2418 41 1 2.3602 0.7411 5.4165 42 1 6.9332 2.3567 3.5761 43 1 7.3435 0.6335 3.4017 44 1 6.1884 1.3913 2.2793 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601039972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:21 Heat of formation + Delta-G solvation = 3.056766 kcal Electronic energy + Delta-G solvation = -25242.098593 eV Core-core repulsion = 21776.337794 eV Total energy + Delta-G solvation = -3465.760799 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.28475 -39.35562 -37.12970 -34.73907 -33.96388 -32.66893 -31.49019 -30.83863 -28.76051 -28.25047 -26.97802 -24.74618 -23.69399 -22.96675 -22.37079 -20.58736 -19.30215 -18.46305 -17.15679 -16.95775 -16.69387 -16.06689 -15.54225 -15.17626 -14.82133 -14.58888 -14.04958 -13.79931 -13.27826 -13.03537 -12.88396 -12.84677 -12.65580 -12.44809 -12.29098 -12.14353 -11.76643 -11.49776 -11.35096 -11.20606 -11.10008 -10.95642 -10.80161 -10.73054 -10.36760 -10.22324 -10.06210 -10.01279 -9.80208 -9.46168 -9.33159 -8.99189 -8.64772 -7.78136 -6.35361 -4.46257 1.89424 2.30518 3.11857 3.22725 3.25818 3.46692 3.69252 4.00320 4.20883 4.57163 4.86993 4.96891 5.10211 5.11768 5.21892 5.42114 5.54466 5.62002 5.65436 5.68909 5.75299 5.88163 5.91428 5.93879 5.96062 6.03887 6.09455 6.14920 6.15478 6.34091 6.39212 6.40120 6.48115 6.53055 6.58912 6.61859 6.76473 6.86774 7.12663 7.44832 7.60302 7.89024 8.21664 8.63837 8.74196 8.90534 9.22865 10.68901 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.007909 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.390859 B = 3539.433076 C = 5709.663109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.123 3.877 7 N -0.583 5.583 8 C 0.219 3.781 9 C -0.551 4.551 10 H 0.065 0.935 11 C 0.069 3.931 12 N -0.879 5.879 13 Si 0.891 3.109 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.279 1.279 17 C 0.595 3.405 18 O -0.564 6.564 19 C -0.257 4.257 20 C 0.020 3.980 21 O 0.080 5.920 22 N -0.375 5.375 23 C 0.052 3.948 24 C -0.066 4.066 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.268 0.732 41 H 0.249 0.751 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 2.091 -7.273 8.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.120 4.120 4 C -0.156 4.156 5 C -0.206 4.206 6 C 0.000 4.000 7 N -0.312 5.312 8 C 0.099 3.901 9 C -0.590 4.590 10 H 0.084 0.916 11 C -0.136 4.136 12 N -0.515 5.515 13 Si 0.718 3.282 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.205 1.205 17 C 0.383 3.617 18 O -0.445 6.445 19 C -0.264 4.264 20 C -0.061 4.061 21 O 0.023 5.977 22 N -0.086 5.086 23 C -0.110 4.110 24 C -0.124 4.124 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.265 0.735 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.584 1.865 -6.739 8.361 hybrid contribution -1.439 0.474 0.212 1.530 sum 3.145 2.339 -6.528 7.614 Atomic orbital electron populations 1.21891 0.95843 1.01705 1.01733 1.21613 0.96352 0.96057 1.01792 1.21567 1.00337 0.95668 0.94422 1.21537 1.00835 0.99250 0.94025 1.21769 1.00831 1.00765 0.97264 1.21435 0.98410 0.96788 0.83349 1.47996 1.19918 1.35282 1.28002 1.19856 0.92715 0.84121 0.93428 1.21616 1.22842 0.93903 1.20605 0.91642 1.24986 0.96627 0.94726 0.97270 1.69936 1.40027 1.01551 1.40017 0.86527 0.81047 0.79499 0.81110 1.19456 1.20650 1.20470 1.16878 0.80844 0.82848 0.81172 1.90688 1.65938 1.26588 1.61326 1.22203 0.92871 1.11028 1.00335 1.27796 0.96587 0.91179 0.90508 1.84515 1.10746 1.59978 1.42449 1.73546 1.04056 1.20051 1.10901 1.24721 0.94264 0.98033 0.94020 1.20072 0.93283 1.01880 0.97129 0.93189 0.91240 0.93340 0.92846 0.91054 0.91490 0.91508 0.92222 0.93284 0.93010 0.92632 0.89818 0.90944 0.92880 0.94285 0.92172 0.73514 0.90102 0.90910 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.52 37.16 0.32 -1.97 16 2 C -0.12 -1.83 4.87 -26.73 -0.13 -1.96 16 3 C -0.10 -1.51 2.37 -90.62 -0.22 -1.73 16 4 C -0.12 -1.48 5.16 -26.73 -0.14 -1.62 16 5 C -0.15 -1.64 9.51 37.16 0.35 -1.29 16 6 C 0.12 2.15 4.75 -4.04 -0.02 2.13 16 7 N -0.58 -11.64 2.28 -176.34 -0.40 -12.04 16 8 C 0.22 4.73 3.85 -5.19 -0.02 4.71 16 9 C -0.55 -12.82 7.25 -34.44 -0.25 -13.07 16 10 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.64 5.39 -17.82 -0.10 1.55 16 12 N -0.88 -21.97 13.29 55.43 0.74 -21.23 16 13 Si 0.89 18.87 29.54 -169.99 -5.02 13.84 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 17 C 0.59 12.49 7.64 -12.54 -0.10 12.39 16 18 O -0.56 -12.63 16.66 5.27 0.09 -12.54 16 19 C -0.26 -5.18 5.62 -102.89 -0.58 -5.76 16 20 C 0.02 0.39 9.99 30.41 0.30 0.70 16 21 O 0.08 1.53 11.06 18.67 0.21 1.74 16 22 N -0.38 -7.16 12.01 34.78 0.42 -6.74 16 23 C 0.05 0.97 7.59 -79.77 -0.61 0.37 16 24 C -0.07 -0.98 10.49 36.00 0.38 -0.60 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.16 5.54 -51.93 -0.29 0.87 16 27 H 0.05 0.62 6.50 -51.93 -0.34 0.28 16 28 H 0.05 0.73 6.73 -51.93 -0.35 0.38 16 29 H 0.07 1.25 5.77 -51.93 -0.30 0.95 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.80 6.24 -51.93 -0.32 0.48 16 32 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.60 6.87 -51.93 -0.36 0.25 16 36 H 0.08 1.45 6.06 -51.93 -0.31 1.14 16 37 H 0.07 1.30 7.36 -51.93 -0.38 0.92 16 38 H 0.05 1.18 4.63 -51.93 -0.24 0.94 16 39 H 0.04 0.90 5.37 -51.93 -0.28 0.62 16 40 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 41 H 0.25 5.05 5.29 -52.48 -0.28 4.77 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -26.08 346.78 -5.92 -32.00 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.38 Total: 5.89 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.80 Total: -6.15 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.75 Total: -40.01 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.29 Total: -10.80 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.08 -5.92 -32.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601039972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.061 kcal (2) G-P(sol) polarization free energy of solvation -26.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds