Wall clock time and date at job start Tue Mar 31 2020 07:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47306 * 2 1 4 4 C 1.52993 * 109.47327 * 300.84562 * 3 2 1 5 5 C 1.53001 * 109.47413 * 295.38717 * 4 3 2 6 6 C 1.53008 * 109.46836 * 60.84562 * 3 2 1 7 7 N 1.46500 * 109.47025 * 64.99952 * 6 3 2 8 8 C 1.46500 * 119.99949 * 269.99612 * 7 6 3 9 9 C 1.50698 * 109.47568 * 272.62157 * 8 7 6 10 10 H 1.08002 * 119.99667 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00312 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00001 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47208 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47025 * 120.00652 * 13 11 9 16 16 H 1.48502 * 109.47145 * 240.00289 * 13 11 9 17 17 C 1.34772 * 120.00266 * 89.99911 * 7 6 3 18 18 O 1.21612 * 119.99914 * 4.89973 * 17 7 6 19 19 C 1.47392 * 120.00143 * 184.89419 * 17 7 6 20 20 C 1.37361 * 128.57164 * 320.06968 * 19 17 7 21 21 O 1.33486 * 106.34865 * 180.24024 * 20 19 17 22 22 N 1.20659 * 113.15067 * 359.51411 * 21 20 19 23 23 C 1.30010 * 112.30680 * 0.50670 * 22 21 20 24 24 C 1.50699 * 127.33716 * 179.67438 * 23 22 21 25 25 H 1.08993 * 109.47363 * 183.33622 * 1 2 3 26 26 H 1.08996 * 109.46885 * 303.34074 * 1 2 3 27 27 H 1.09002 * 109.47159 * 63.33639 * 1 2 3 28 28 H 1.08999 * 109.46953 * 240.00249 * 2 1 3 29 29 H 1.08998 * 109.47100 * 120.00835 * 2 1 3 30 30 H 1.08999 * 109.47053 * 180.83852 * 3 2 1 31 31 H 1.08998 * 109.47669 * 55.39102 * 4 3 2 32 32 H 1.09007 * 109.47357 * 175.38976 * 4 3 2 33 33 H 1.08992 * 109.47445 * 185.83054 * 5 4 3 34 34 H 1.09003 * 109.46934 * 305.83249 * 5 4 3 35 35 H 1.09002 * 109.46484 * 65.82954 * 5 4 3 36 36 H 1.08995 * 109.46919 * 304.99715 * 6 3 2 37 37 H 1.09004 * 109.46986 * 184.99846 * 6 3 2 38 38 H 1.09004 * 109.46959 * 32.62393 * 8 7 6 39 39 H 1.09002 * 109.47497 * 152.61697 * 8 7 6 40 40 H 0.97001 * 119.99804 * 179.97438 * 12 11 9 41 41 H 1.08007 * 126.82356 * 359.97438 * 20 19 17 42 42 H 1.09005 * 109.47249 * 270.02868 * 24 23 22 43 43 H 1.08997 * 109.47138 * 30.02643 * 24 23 22 44 44 H 1.08999 * 109.47179 * 150.02824 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5128 2.1698 -1.2384 5 6 2.0978 1.5249 -2.4964 6 6 1.5475 2.1575 1.2598 7 7 2.1481 1.5340 2.4416 8 6 1.4695 0.4185 3.1060 9 6 0.4983 0.9565 4.1251 10 1 0.3965 2.0227 4.2637 11 6 -0.2609 0.0876 4.8798 12 7 -0.1372 -1.2108 4.7106 13 14 -1.4642 0.7544 6.1434 14 1 -1.4139 2.2385 6.1398 15 1 -2.8383 0.3052 5.8038 16 1 -1.0973 0.2496 7.4909 17 6 3.3249 1.9865 2.9177 18 8 3.8444 2.9680 2.4219 19 6 3.9823 1.2920 4.0393 20 6 3.4102 0.7486 5.1636 21 8 4.4105 0.2368 5.8843 22 7 5.4904 0.3793 5.3653 23 6 5.4133 1.0092 4.2306 24 6 6.5481 1.3728 3.3081 25 1 -0.3634 -1.0258 0.0598 26 1 -0.3633 0.5648 0.8585 27 1 -0.3633 0.4612 -0.9184 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 3.1299 1.4424 -0.0150 31 1 0.4255 2.0992 -1.2660 32 1 1.8078 3.2184 -1.1970 33 1 1.8060 2.1053 -3.3716 34 1 3.1850 1.5026 -2.4213 35 1 1.7193 0.5072 -2.5925 36 1 0.4619 2.0804 1.3204 37 1 1.8353 3.2080 1.2174 38 1 0.9294 -0.1712 2.3653 39 1 2.2071 -0.2109 3.6039 40 1 -0.6711 -1.8222 5.2418 41 1 2.3602 0.7411 5.4165 42 1 6.9332 2.3567 3.5761 43 1 7.3435 0.6335 3.4017 44 1 6.1884 1.3913 2.2793 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601039972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:20 Heat of formation + Delta-G solvation = -9.001410 kcal Electronic energy + Delta-G solvation = -25242.621475 eV Core-core repulsion = 21776.337794 eV Total energy + Delta-G solvation = -3466.283681 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.80940 -40.93889 -38.50043 -36.37238 -35.42291 -34.45069 -32.99350 -31.97535 -30.21117 -29.62676 -28.60628 -26.14244 -25.24877 -24.40396 -23.72510 -22.08320 -20.76840 -19.80985 -18.74363 -18.66102 -18.36198 -17.62034 -17.06943 -16.57243 -16.29550 -16.17429 -15.51474 -15.26464 -14.50911 -14.44887 -14.23428 -14.20616 -14.01773 -13.79760 -13.72966 -13.52530 -13.07824 -13.00467 -12.76228 -12.62370 -12.55966 -12.37449 -12.25531 -12.09710 -11.98932 -11.68028 -11.43144 -11.28215 -11.20791 -11.00752 -10.89687 -10.69847 -10.39756 -9.43491 -8.20994 -6.37171 0.29149 0.80206 1.41997 1.48783 1.56567 1.86843 2.07144 2.35898 2.50392 3.08913 3.12831 3.42890 3.80002 3.93438 4.02072 4.05244 4.14402 4.42013 4.46306 4.52260 4.61295 4.61748 4.63146 4.71641 4.76134 4.85675 4.87116 4.91142 4.95212 5.01468 5.09749 5.14377 5.16434 5.21806 5.35470 5.39382 5.44857 5.50511 5.64730 5.71098 5.84259 6.05195 6.50625 6.79440 7.17846 7.23618 7.36632 8.82730 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.007909 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.390859 B = 3539.433076 C = 5709.663109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.091 4.091 4 C -0.114 4.114 5 C -0.146 4.146 6 C 0.120 3.880 7 N -0.581 5.581 8 C 0.234 3.766 9 C -0.552 4.552 10 H 0.055 0.945 11 C 0.037 3.963 12 N -0.905 5.905 13 Si 0.945 3.055 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.276 1.276 17 C 0.592 3.408 18 O -0.581 6.581 19 C -0.277 4.277 20 C 0.025 3.975 21 O 0.077 5.923 22 N -0.380 5.380 23 C 0.057 3.943 24 C -0.065 4.065 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.025 0.975 40 H 0.270 0.730 41 H 0.241 0.759 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.508 2.436 -8.296 9.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.110 4.110 4 C -0.152 4.152 5 C -0.203 4.203 6 C -0.002 4.002 7 N -0.310 5.310 8 C 0.114 3.886 9 C -0.590 4.590 10 H 0.074 0.926 11 C -0.166 4.166 12 N -0.543 5.543 13 Si 0.771 3.229 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.201 1.201 17 C 0.380 3.620 18 O -0.464 6.464 19 C -0.284 4.284 20 C -0.056 4.056 21 O 0.022 5.978 22 N -0.092 5.092 23 C -0.107 4.107 24 C -0.123 4.123 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.257 0.743 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.634 2.211 -7.763 9.307 hybrid contribution -1.439 0.374 0.516 1.574 sum 3.194 2.585 -7.247 8.331 Atomic orbital electron populations 1.21823 0.95390 1.01365 1.01945 1.21547 0.96624 0.95874 1.01260 1.21467 0.99382 0.95726 0.94459 1.21515 1.01320 0.99092 0.93260 1.21746 1.00540 1.01096 0.96938 1.21612 0.98389 0.96669 0.83565 1.48020 1.19656 1.34753 1.28530 1.19558 0.91926 0.84233 0.92879 1.21670 1.23054 0.93327 1.20945 0.92634 1.25502 0.97757 0.94787 0.98535 1.70008 1.40897 1.02402 1.40947 0.85701 0.79187 0.78714 0.79347 1.19595 1.20690 1.20131 1.17007 0.80982 0.82719 0.81299 1.90664 1.66388 1.27283 1.62043 1.22333 0.94067 1.11668 1.00334 1.27567 0.96404 0.91100 0.90579 1.84506 1.10735 1.60091 1.42473 1.73538 1.03807 1.20608 1.11293 1.25278 0.94505 0.96834 0.94037 1.20237 0.92619 1.03340 0.96064 0.93514 0.93499 0.90836 0.90926 0.93983 0.92921 0.90649 0.92046 0.91536 0.93350 0.92274 0.89773 0.91453 0.93439 0.95706 0.92056 0.74311 0.88700 0.88470 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 8.52 71.98 0.61 -3.61 16 2 C -0.12 -3.41 4.87 30.59 0.15 -3.26 16 3 C -0.09 -2.67 2.37 -10.79 -0.03 -2.70 16 4 C -0.11 -2.62 5.16 30.59 0.16 -2.47 16 5 C -0.15 -2.84 9.51 71.98 0.68 -2.15 16 6 C 0.12 4.19 4.75 86.38 0.41 4.60 16 7 N -0.58 -23.54 2.28 -830.06 -1.89 -25.44 16 8 C 0.23 10.35 3.85 85.63 0.33 10.68 16 9 C -0.55 -25.94 7.25 25.60 0.19 -25.76 16 10 H 0.06 2.70 7.81 -2.91 -0.02 2.67 16 11 C 0.04 1.76 5.39 84.65 0.46 2.22 16 12 N -0.90 -45.50 13.29 21.45 0.28 -45.21 16 13 Si 0.94 38.60 29.54 68.60 2.03 40.63 16 14 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 15 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 17 C 0.59 25.05 7.64 86.65 0.66 25.71 16 18 O -0.58 -26.01 16.66 -4.07 -0.07 -26.07 16 19 C -0.28 -11.21 5.62 -18.74 -0.11 -11.31 16 20 C 0.02 0.98 9.99 67.61 0.68 1.65 16 21 O 0.08 2.94 11.06 77.05 0.85 3.79 16 22 N -0.38 -14.25 12.01 -44.77 -0.54 -14.79 16 23 C 0.06 2.06 7.59 45.16 0.34 2.40 16 24 C -0.07 -1.82 10.49 71.24 0.75 -1.07 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.55 5.54 -2.39 -0.01 1.53 16 27 H 0.07 1.71 6.50 -2.39 -0.02 1.69 16 28 H 0.07 1.86 6.73 -2.39 -0.02 1.85 16 29 H 0.04 1.49 5.77 -2.39 -0.01 1.47 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.62 6.24 -2.39 -0.01 1.60 16 32 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 1.11 6.87 -2.39 -0.02 1.09 16 36 H 0.08 2.92 6.06 -2.39 -0.01 2.91 16 37 H 0.07 2.42 7.36 -2.39 -0.02 2.40 16 38 H 0.05 2.17 4.63 -2.38 -0.01 2.16 16 39 H 0.03 1.18 5.37 -2.39 -0.01 1.17 16 40 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 41 H 0.24 10.01 5.29 -2.91 -0.02 9.99 16 42 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 43 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -54.65 346.78 6.96 -47.69 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 1.01 Total: 24.48 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 5.28 Total: -5.07 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -2.14 Total: -85.44 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.78 Total: -22.28 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -54.65 6.96 -47.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601039972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.686 kcal (2) G-P(sol) polarization free energy of solvation -54.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds