Wall clock time and date at job start Tue Mar 31 2020 06:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46822 * 2 1 4 4 N 1.30842 * 125.89702 * 270.03760 * 3 2 1 5 5 N 1.40084 * 108.20507 * 179.75020 * 4 3 2 6 6 C 1.46497 * 126.03640 * 180.23479 * 5 4 3 7 7 C 1.50697 * 109.47305 * 270.14966 * 6 5 4 8 8 H 1.08003 * 119.99630 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00258 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00377 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99982 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47059 * 90.00198 * 11 9 7 13 13 H 1.48505 * 109.47094 * 209.99718 * 11 9 7 14 14 H 1.48491 * 109.47057 * 330.00017 * 11 9 7 15 15 C 1.34944 * 107.92632 * 0.35958 * 5 4 3 16 16 C 1.50703 * 126.12731 * 179.90759 * 15 5 4 17 17 C 1.53000 * 109.46912 * 89.69312 * 16 15 5 18 18 C 1.35317 * 107.74572 * 359.64485 * 15 5 4 19 19 C 1.50699 * 126.04067 * 180.24538 * 18 15 5 20 20 C 1.52994 * 109.47177 * 89.99948 * 19 18 15 21 21 C 1.50701 * 109.47394 * 180.02562 * 20 19 18 22 22 O 1.20822 * 119.99714 * 359.97438 * 21 20 19 23 23 O 1.34234 * 120.00424 * 180.02562 * 21 20 19 24 24 C 1.45193 * 117.00268 * 179.97438 * 23 21 20 25 25 H 1.09006 * 109.46879 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47388 * 300.00178 * 1 2 3 27 27 H 1.09002 * 109.47126 * 60.00424 * 1 2 3 28 28 H 1.08995 * 109.47388 * 239.99822 * 2 1 3 29 29 H 1.09002 * 109.47126 * 119.99575 * 2 1 3 30 30 H 1.09007 * 109.47523 * 30.14954 * 6 5 4 31 31 H 1.09006 * 109.47221 * 150.14971 * 6 5 4 32 32 H 0.96998 * 120.00434 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.47152 * 329.69084 * 16 15 5 34 34 H 1.09001 * 109.46980 * 209.69184 * 16 15 5 35 35 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.47194 * 299.99742 * 17 16 15 37 37 H 1.08992 * 109.47399 * 59.99914 * 17 16 15 38 38 H 1.09001 * 109.47487 * 210.00166 * 19 18 15 39 39 H 1.09005 * 109.47407 * 330.00115 * 19 18 15 40 40 H 1.08997 * 109.47548 * 300.00379 * 20 19 18 41 41 H 1.08997 * 109.47448 * 60.00347 * 20 19 18 42 42 H 1.08995 * 109.47359 * 179.97438 * 24 23 21 43 43 H 1.09006 * 109.47126 * 299.99722 * 24 23 21 44 44 H 1.09000 * 109.47396 * 59.99503 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2873 2.1443 -1.0599 5 7 2.7269 3.4045 -0.6342 6 6 3.1135 4.5205 -1.5009 7 6 4.5872 4.4340 -1.8039 8 1 5.1768 3.6284 -1.3918 9 6 5.1827 5.3831 -2.6074 10 7 6.4689 5.3079 -2.8714 11 14 4.1626 6.7759 -3.3208 12 1 4.1697 7.9261 -2.3816 13 1 4.7407 7.1963 -4.6226 14 1 2.7668 6.3126 -3.5256 15 6 2.7339 3.4079 0.7152 16 6 3.1398 4.5593 1.5987 17 6 1.9167 5.4288 1.8973 18 6 2.3056 2.1941 1.1329 19 6 2.1501 1.7536 2.5657 20 6 0.7373 2.0845 3.0505 21 6 0.5819 1.6445 4.4835 22 8 1.5063 1.1197 5.0578 23 8 -0.5837 1.8348 5.1215 24 6 -0.6616 1.3857 6.5000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.5478 4.4710 -2.4313 31 1 2.9011 5.4630 -0.9962 32 1 6.8877 5.9754 -3.4370 33 1 3.8960 5.1580 1.0909 34 1 3.5484 4.1740 2.5329 35 1 2.2104 6.2618 2.5360 36 1 1.5081 5.8141 0.9632 37 1 1.1606 4.8302 2.4051 38 1 2.3156 0.6785 2.6353 39 1 2.8787 2.2743 3.1871 40 1 0.5717 3.1596 2.9810 41 1 0.0086 1.5638 2.4293 42 1 -1.6543 1.5992 6.8962 43 1 -0.4757 0.3125 6.5436 44 1 0.0869 1.9086 7.0954 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601931688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:00 Heat of formation + Delta-G solvation = -41.011160 kcal Electronic energy + Delta-G solvation = -24215.293870 eV Core-core repulsion = 20747.622142 eV Total energy + Delta-G solvation = -3467.671727 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90415 -40.39797 -36.70979 -34.96323 -34.26692 -33.03535 -32.22016 -30.92991 -28.92816 -27.84709 -27.14418 -24.35297 -23.86248 -23.03861 -21.70277 -20.76234 -18.80726 -18.63336 -17.64202 -17.13351 -16.71454 -16.61544 -15.71270 -14.87272 -14.50420 -14.39432 -14.04020 -13.90296 -13.69551 -13.46696 -13.22827 -12.81685 -12.73413 -12.56634 -12.35541 -12.28585 -12.06946 -11.90265 -11.77585 -11.44098 -11.29785 -11.00279 -10.96491 -10.87907 -10.71443 -10.67328 -10.51458 -10.49642 -10.23658 -9.71991 -9.68214 -8.80997 -8.30311 -7.58477 -6.28759 -4.32200 2.14804 2.54190 2.71754 3.11595 3.19568 3.20865 3.30509 3.45313 4.19061 4.70580 4.89734 4.94757 4.96730 5.01070 5.04620 5.11347 5.13039 5.27962 5.33016 5.38579 5.51222 5.57331 5.59116 5.73040 5.77822 5.85252 5.98295 6.01827 6.06992 6.12147 6.20162 6.21487 6.29681 6.33612 6.40916 6.45892 6.53321 6.77215 6.91858 7.26316 7.37292 7.67617 7.82061 8.28464 8.56383 8.76621 9.26376 10.83719 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.004003 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.663844 B = 6992.618429 C = 7722.479252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C 0.061 3.939 4 N -0.290 5.290 5 N -0.322 5.322 6 C 0.230 3.770 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.886 5.886 11 Si 0.871 3.129 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.264 1.264 15 C 0.105 3.895 16 C -0.067 4.067 17 C -0.144 4.144 18 C -0.263 4.263 19 C -0.015 4.015 20 C -0.112 4.112 21 C 0.459 3.541 22 O -0.508 6.508 23 O -0.364 6.364 24 C 0.035 3.965 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.269 0.731 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.861 -4.828 14.434 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 C -0.104 4.104 4 N -0.113 5.113 5 N -0.100 5.100 6 C 0.111 3.889 7 C -0.580 4.580 8 H 0.099 0.901 9 C -0.125 4.125 10 N -0.522 5.522 11 Si 0.697 3.303 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.188 1.188 15 C -0.027 4.027 16 C -0.106 4.106 17 C -0.202 4.202 18 C -0.275 4.275 19 C -0.054 4.054 20 C -0.149 4.149 21 C 0.303 3.697 22 O -0.395 6.395 23 O -0.281 6.281 24 C -0.059 4.059 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.365 -4.724 13.105 20.011 hybrid contribution -0.183 0.759 0.474 0.913 sum -14.548 -3.965 13.579 20.292 Atomic orbital electron populations 1.21738 0.95020 1.01214 1.02101 1.19824 0.95462 0.89840 1.02721 1.21909 1.01213 0.96675 0.90615 1.77293 1.20329 0.91100 1.22548 1.48784 1.46701 1.10605 1.03956 1.19971 0.97816 0.81298 0.89811 1.21164 0.90775 1.13566 1.32463 0.90126 1.24807 0.94894 0.97498 0.95276 1.69871 1.10015 1.35510 1.36848 0.86919 0.81030 0.82746 0.79574 1.19598 1.20455 1.18813 1.20710 1.00031 0.96585 0.85325 1.20216 0.98747 0.93639 0.98025 1.21762 0.97568 0.99228 1.01651 1.19219 1.18768 0.94787 0.94769 1.19481 0.92986 1.01587 0.91323 1.21695 1.01513 1.04225 0.87470 1.24180 0.79851 0.75434 0.90252 1.90663 1.40606 1.40042 1.68234 1.86535 1.37803 1.75791 1.27926 1.23225 1.03176 1.00282 0.79245 0.92576 0.92770 0.92476 0.90839 0.90618 0.93295 0.93925 0.92093 0.89291 0.89922 0.92110 0.92661 0.92660 0.90939 0.91055 0.87723 0.87662 0.88342 0.92004 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 37.16 0.37 -1.28 16 2 C -0.04 -0.55 6.31 -27.88 -0.18 -0.72 16 3 C 0.06 1.10 6.47 -82.41 -0.53 0.57 16 4 N -0.29 -6.39 12.58 33.67 0.42 -5.96 16 5 N -0.32 -7.14 3.60 -58.31 -0.21 -7.35 16 6 C 0.23 5.45 4.89 -5.20 -0.03 5.42 16 7 C -0.54 -15.05 9.94 -34.44 -0.34 -15.39 16 8 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 9 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 10 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 11 Si 0.87 20.03 27.47 -169.99 -4.67 15.36 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 15 C 0.10 1.97 6.18 -82.26 -0.51 1.46 16 16 C -0.07 -1.06 5.73 -27.88 -0.16 -1.22 16 17 C -0.14 -1.86 9.89 37.16 0.37 -1.49 16 18 C -0.26 -4.47 5.35 -105.05 -0.56 -5.03 16 19 C -0.02 -0.21 4.59 -27.89 -0.13 -0.34 16 20 C -0.11 -1.26 5.79 -27.89 -0.16 -1.42 16 21 C 0.46 5.53 7.96 36.01 0.29 5.82 16 22 O -0.51 -7.41 15.73 -18.75 -0.29 -7.71 16 23 O -0.36 -3.87 10.57 -39.27 -0.41 -4.29 16 24 C 0.03 0.27 10.56 101.05 1.07 1.33 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.58 6.26 -51.93 -0.32 0.26 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.08 0.93 7.26 -51.93 -0.38 0.55 16 30 H 0.05 1.18 7.20 -51.93 -0.37 0.81 16 31 H 0.04 0.93 7.09 -51.93 -0.37 0.56 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.09 1.58 7.74 -51.93 -0.40 1.18 16 34 H 0.08 1.15 7.15 -51.93 -0.37 0.78 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.63 6.12 -51.93 -0.32 0.31 16 38 H 0.07 0.98 7.21 -51.93 -0.37 0.61 16 39 H 0.07 0.99 7.10 -51.93 -0.37 0.62 16 40 H 0.10 1.11 6.12 -51.93 -0.32 0.79 16 41 H 0.11 1.09 6.26 -51.93 -0.32 0.76 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 44 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -32.58 360.66 -6.45 -39.03 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.89 Total: 1.14 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -0.61 Total: -10.19 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.99 Total: -38.78 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.71 Total: -12.00 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.58 -6.45 -39.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601931688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.981 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds