Wall clock time and date at job start Tue Mar 31 2020 06:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46822 * 2 1 4 4 N 1.30842 * 125.89702 * 270.03760 * 3 2 1 5 5 N 1.40084 * 108.20507 * 179.75020 * 4 3 2 6 6 C 1.46497 * 126.03640 * 180.23479 * 5 4 3 7 7 C 1.50697 * 109.47305 * 270.14966 * 6 5 4 8 8 H 1.08003 * 119.99630 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00258 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00377 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99982 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47059 * 90.00198 * 11 9 7 13 13 H 1.48505 * 109.47094 * 209.99718 * 11 9 7 14 14 H 1.48491 * 109.47057 * 330.00017 * 11 9 7 15 15 C 1.34944 * 107.92632 * 0.35958 * 5 4 3 16 16 C 1.50703 * 126.12731 * 179.90759 * 15 5 4 17 17 C 1.53000 * 109.46912 * 89.69312 * 16 15 5 18 18 C 1.35317 * 107.74572 * 359.64485 * 15 5 4 19 19 C 1.50699 * 126.04067 * 180.24538 * 18 15 5 20 20 C 1.52994 * 109.47177 * 89.99948 * 19 18 15 21 21 C 1.50701 * 109.47394 * 180.02562 * 20 19 18 22 22 O 1.20822 * 119.99714 * 359.97438 * 21 20 19 23 23 O 1.34234 * 120.00424 * 180.02562 * 21 20 19 24 24 C 1.45193 * 117.00268 * 179.97438 * 23 21 20 25 25 H 1.09006 * 109.46879 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47388 * 300.00178 * 1 2 3 27 27 H 1.09002 * 109.47126 * 60.00424 * 1 2 3 28 28 H 1.08995 * 109.47388 * 239.99822 * 2 1 3 29 29 H 1.09002 * 109.47126 * 119.99575 * 2 1 3 30 30 H 1.09007 * 109.47523 * 30.14954 * 6 5 4 31 31 H 1.09006 * 109.47221 * 150.14971 * 6 5 4 32 32 H 0.96998 * 120.00434 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.47152 * 329.69084 * 16 15 5 34 34 H 1.09001 * 109.46980 * 209.69184 * 16 15 5 35 35 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.47194 * 299.99742 * 17 16 15 37 37 H 1.08992 * 109.47399 * 59.99914 * 17 16 15 38 38 H 1.09001 * 109.47487 * 210.00166 * 19 18 15 39 39 H 1.09005 * 109.47407 * 330.00115 * 19 18 15 40 40 H 1.08997 * 109.47548 * 300.00379 * 20 19 18 41 41 H 1.08997 * 109.47448 * 60.00347 * 20 19 18 42 42 H 1.08995 * 109.47359 * 179.97438 * 24 23 21 43 43 H 1.09006 * 109.47126 * 299.99722 * 24 23 21 44 44 H 1.09000 * 109.47396 * 59.99503 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2873 2.1443 -1.0599 5 7 2.7269 3.4045 -0.6342 6 6 3.1135 4.5205 -1.5009 7 6 4.5872 4.4340 -1.8039 8 1 5.1768 3.6284 -1.3918 9 6 5.1827 5.3831 -2.6074 10 7 6.4689 5.3079 -2.8714 11 14 4.1626 6.7759 -3.3208 12 1 4.1697 7.9261 -2.3816 13 1 4.7407 7.1963 -4.6226 14 1 2.7668 6.3126 -3.5256 15 6 2.7339 3.4079 0.7152 16 6 3.1398 4.5593 1.5987 17 6 1.9167 5.4288 1.8973 18 6 2.3056 2.1941 1.1329 19 6 2.1501 1.7536 2.5657 20 6 0.7373 2.0845 3.0505 21 6 0.5819 1.6445 4.4835 22 8 1.5063 1.1197 5.0578 23 8 -0.5837 1.8348 5.1215 24 6 -0.6616 1.3857 6.5000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.5478 4.4710 -2.4313 31 1 2.9011 5.4630 -0.9962 32 1 6.8877 5.9754 -3.4370 33 1 3.8960 5.1580 1.0909 34 1 3.5484 4.1740 2.5329 35 1 2.2104 6.2618 2.5360 36 1 1.5081 5.8141 0.9632 37 1 1.1606 4.8302 2.4051 38 1 2.3156 0.6785 2.6353 39 1 2.8787 2.2743 3.1871 40 1 0.5717 3.1596 2.9810 41 1 0.0086 1.5638 2.4293 42 1 -1.6543 1.5992 6.8962 43 1 -0.4757 0.3125 6.5436 44 1 0.0869 1.9086 7.0954 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601931688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:59 Heat of formation + Delta-G solvation = -60.648316 kcal Electronic energy + Delta-G solvation = -24216.145401 eV Core-core repulsion = 20747.622142 eV Total energy + Delta-G solvation = -3468.523258 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.30987 -41.35337 -37.60263 -36.41872 -35.49045 -34.92130 -33.30195 -32.58201 -30.05701 -29.26843 -28.24116 -25.71143 -25.07603 -24.26738 -23.28591 -21.70839 -20.16930 -20.03277 -19.25185 -18.58835 -17.64834 -17.51793 -17.20008 -16.31350 -15.96909 -15.79113 -15.24804 -14.84496 -14.82185 -14.70390 -14.50805 -14.33503 -13.98541 -13.79687 -13.71196 -13.34161 -13.23100 -13.18331 -12.80282 -12.76549 -12.57997 -12.41488 -12.28608 -11.99812 -11.93278 -11.89006 -11.82937 -11.74129 -11.55817 -11.46578 -11.13768 -10.91932 -9.87196 -9.05427 -8.43634 -6.54707 1.14602 1.24239 1.30771 1.33531 1.43795 1.71441 1.88302 2.05851 2.23475 2.88441 3.71215 3.75714 3.87629 4.05071 4.09969 4.18792 4.26667 4.35796 4.38796 4.39539 4.45859 4.53001 4.55202 4.57553 4.66339 4.75771 4.76398 4.80309 4.87601 5.01192 5.04624 5.09621 5.09847 5.18349 5.20781 5.37936 5.41701 5.44294 5.50256 5.56644 5.90602 6.04056 6.40254 6.50204 6.79872 7.06574 7.10143 8.73200 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.004003 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.663844 B = 6992.618429 C = 7722.479252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.041 4.041 3 C 0.065 3.935 4 N -0.344 5.344 5 N -0.352 5.352 6 C 0.243 3.757 7 C -0.550 4.550 8 H 0.022 0.978 9 C 0.021 3.979 10 N -0.937 5.937 11 Si 0.949 3.051 12 H -0.249 1.249 13 H -0.277 1.277 14 H -0.247 1.247 15 C 0.092 3.908 16 C -0.067 4.067 17 C -0.138 4.138 18 C -0.256 4.256 19 C -0.009 4.009 20 C -0.104 4.104 21 C 0.467 3.533 22 O -0.538 6.538 23 O -0.365 6.365 24 C 0.027 3.973 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.274 0.726 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.129 0.871 43 H 0.061 0.939 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.854 -4.222 16.163 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.080 4.080 3 C -0.100 4.100 4 N -0.166 5.166 5 N -0.131 5.131 6 C 0.123 3.877 7 C -0.589 4.589 8 H 0.040 0.960 9 C -0.179 4.179 10 N -0.576 5.576 11 Si 0.770 3.230 12 H -0.173 1.173 13 H -0.202 1.202 14 H -0.170 1.170 15 C -0.038 4.038 16 C -0.106 4.106 17 C -0.195 4.195 18 C -0.267 4.267 19 C -0.048 4.048 20 C -0.141 4.141 21 C 0.312 3.688 22 O -0.428 6.428 23 O -0.281 6.281 24 C -0.066 4.066 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.148 0.852 43 H 0.080 0.920 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.386 -4.132 14.869 23.247 hybrid contribution 0.796 0.398 0.056 0.892 sum -16.590 -3.734 14.925 22.625 Atomic orbital electron populations 1.21695 0.92770 1.02972 1.01911 1.20036 0.97339 0.87251 1.03387 1.22679 0.99242 0.97982 0.90144 1.77221 1.22738 0.91803 1.24824 1.48641 1.48958 1.10614 1.04923 1.19630 0.94533 0.83131 0.90405 1.21260 0.92898 1.12078 1.32618 0.95993 1.25845 0.96113 1.00611 0.95291 1.70035 1.12373 1.37129 1.38029 0.85697 0.79574 0.78890 0.78815 1.17274 1.20224 1.17005 1.21379 0.99645 0.98293 0.84483 1.20330 0.99582 0.92943 0.97755 1.21745 0.96411 0.99594 1.01776 1.19569 1.17272 0.93725 0.96163 1.19449 0.94776 1.01636 0.88932 1.21568 0.99970 1.05147 0.87448 1.24150 0.79789 0.74632 0.90274 1.90662 1.41644 1.41565 1.68951 1.86517 1.36795 1.75536 1.29301 1.23520 1.05053 1.00298 0.77729 0.89857 0.91570 0.94026 0.91526 0.88570 0.93919 0.91713 0.91714 0.91996 0.88156 0.89808 0.93718 0.90805 0.90622 0.91294 0.86541 0.86205 0.85237 0.91999 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.89 71.98 0.71 -2.09 16 2 C -0.04 -1.09 6.31 29.85 0.19 -0.90 16 3 C 0.06 2.34 6.47 43.10 0.28 2.62 16 4 N -0.34 -15.54 12.58 -47.39 -0.60 -16.13 16 5 N -0.35 -16.04 3.60 -338.40 -1.22 -17.26 16 6 C 0.24 11.77 4.89 85.63 0.42 12.19 16 7 C -0.55 -32.14 9.94 25.60 0.25 -31.88 16 8 H 0.02 1.49 8.06 -2.91 -0.02 1.46 16 9 C 0.02 1.21 5.47 84.65 0.46 1.67 16 10 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 11 Si 0.95 41.44 27.47 68.60 1.88 43.33 16 12 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.25 -10.02 6.54 99.48 0.65 -9.37 16 15 C 0.09 3.45 6.18 41.41 0.26 3.71 16 16 C -0.07 -2.08 5.73 29.85 0.17 -1.91 16 17 C -0.14 -3.23 9.89 71.98 0.71 -2.52 16 18 C -0.26 -8.48 5.35 -20.14 -0.11 -8.59 16 19 C -0.01 -0.24 4.59 29.85 0.14 -0.10 16 20 C -0.10 -2.04 5.79 29.85 0.17 -1.87 16 21 C 0.47 9.99 7.96 71.24 0.57 10.56 16 22 O -0.54 -14.66 15.73 21.98 0.35 -14.31 16 23 O -0.37 -6.67 10.57 -51.45 -0.54 -7.22 16 24 C 0.03 0.35 10.56 113.37 1.20 1.54 16 25 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.07 1.20 6.26 -2.39 -0.01 1.19 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.10 2.15 7.26 -2.39 -0.02 2.13 16 30 H 0.04 2.09 7.20 -2.38 -0.02 2.07 16 31 H 0.07 2.81 7.09 -2.38 -0.02 2.79 16 32 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.06 2.24 7.74 -2.39 -0.02 2.23 16 34 H 0.10 2.69 7.15 -2.39 -0.02 2.68 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.44 6.12 -2.39 -0.01 1.43 16 38 H 0.08 1.89 7.21 -2.39 -0.02 1.87 16 39 H 0.07 1.80 7.10 -2.38 -0.02 1.79 16 40 H 0.12 2.04 6.12 -2.39 -0.01 2.03 16 41 H 0.12 2.04 6.26 -2.39 -0.01 2.02 16 42 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.80 8.13 -2.38 -0.02 0.78 16 44 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 Total: -1.00 -75.49 360.66 6.53 -68.96 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.94 Total: 17.68 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 5.42 Total: -17.58 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -1.51 Total: -90.85 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.20 Total: -21.53 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.33 kcal Total: -75.49 6.53 -68.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601931688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.309 kcal (2) G-P(sol) polarization free energy of solvation -75.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds