Wall clock time and date at job start Tue Mar 31 2020 06:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47163 * 304.43899 * 3 2 1 5 5 C 1.53006 * 109.47168 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46975 * 300.00172 * 5 4 3 7 7 C 1.52999 * 109.47140 * 59.99593 * 6 5 4 8 8 C 1.52996 * 109.47514 * 300.00077 * 7 6 5 9 9 C 1.53007 * 109.46598 * 240.00279 * 2 1 3 10 10 C 1.50703 * 109.47169 * 191.75821 * 9 2 1 11 11 O 1.21276 * 119.84525 * 215.37624 * 10 9 2 12 12 N 1.34533 * 120.30970 * 35.40629 * 10 9 2 13 13 N 1.39862 * 120.70163 * 356.70377 * 12 10 9 14 14 C 1.46500 * 119.64827 * 165.27259 * 13 12 10 15 15 C 1.50701 * 109.47360 * 270.02637 * 14 13 12 16 16 H 1.08006 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00531 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00359 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46775 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46863 * 119.99673 * 19 17 15 22 22 H 1.48503 * 109.47063 * 239.99946 * 19 17 15 23 23 C 1.34522 * 120.70474 * 345.29568 * 13 12 10 24 24 O 1.21278 * 119.84843 * 176.72726 * 23 13 12 25 25 H 1.08998 * 109.47276 * 59.99280 * 1 2 3 26 26 H 1.09002 * 109.46983 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46504 * 299.99796 * 1 2 3 28 28 H 1.09000 * 109.46839 * 184.43435 * 3 2 1 29 29 H 1.08997 * 109.47169 * 60.00224 * 4 3 2 30 30 H 1.08999 * 109.47581 * 299.99826 * 4 3 2 31 31 H 1.09001 * 109.47336 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46839 * 59.99534 * 5 4 3 33 33 H 1.08992 * 109.47223 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46574 * 299.99835 * 6 5 4 35 35 H 1.09000 * 109.46736 * 60.00411 * 7 6 5 36 36 H 1.09010 * 109.46937 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.47334 * 300.00452 * 8 7 6 38 38 H 1.09000 * 109.47356 * 180.02562 * 8 7 6 39 39 H 1.08995 * 109.46933 * 311.76406 * 9 2 1 40 40 H 1.08994 * 109.46787 * 71.76131 * 9 2 1 41 41 H 0.97007 * 119.64513 * 176.73350 * 12 10 9 42 42 H 1.09001 * 109.47484 * 30.02010 * 14 13 12 43 43 H 1.08999 * 109.47670 * 150.02233 * 14 13 12 44 44 H 0.97000 * 120.00115 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4410 2.1952 -1.1896 5 6 1.9515 3.6376 -1.1900 6 6 1.5352 4.3262 0.1113 7 6 2.1343 3.5734 1.3010 8 6 1.6238 2.1311 1.3013 9 6 2.0399 -0.7212 -1.2494 10 6 3.5189 -0.9770 -1.1134 11 8 4.2337 -0.9198 -2.0914 12 7 4.0497 -1.2692 0.0878 13 7 3.2542 -1.2733 1.2382 14 6 3.7568 -1.8976 2.4645 15 6 3.3607 -3.3514 2.4869 16 1 2.7911 -3.7686 1.6695 17 6 3.7243 -4.1488 3.5512 18 7 4.4174 -3.6408 4.5468 19 14 3.2327 -5.9508 3.5793 20 1 2.4626 -6.2729 2.3510 21 1 4.4525 -6.7958 3.6352 22 1 2.3916 -6.2159 4.7741 23 6 2.0324 -0.7105 1.2304 24 8 1.3319 -0.7749 2.2183 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 3.1271 1.4434 -0.0795 29 1 0.3539 2.1942 -1.1101 30 1 1.7379 1.7049 -2.1168 31 1 1.5243 4.1740 -2.0373 32 1 3.0386 3.6382 -1.2697 33 1 1.8993 5.3535 0.1113 34 1 0.4481 4.3256 0.1910 35 1 3.2214 3.5741 1.2212 36 1 1.8381 4.0643 2.2281 37 1 0.5367 2.1304 1.3810 38 1 2.0502 1.5949 2.1491 39 1 1.5157 -1.6704 -1.3603 40 1 1.8578 -0.1008 -2.1268 41 1 4.9943 -1.4788 0.1568 42 1 4.8434 -1.8167 2.4946 43 1 3.3307 -1.3916 3.3308 44 1 4.6736 -4.2018 5.2954 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601932059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:22 Heat of formation + Delta-G solvation = -65.333009 kcal Electronic energy + Delta-G solvation = -25618.195040 eV Core-core repulsion = 22149.468638 eV Total energy + Delta-G solvation = -3468.726402 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16458 -38.75011 -38.11341 -35.74570 -34.87894 -33.01992 -30.83030 -30.66675 -29.60530 -27.98064 -27.33976 -24.49360 -23.11791 -22.60301 -21.56603 -21.09199 -19.52114 -18.17597 -17.18382 -17.08524 -16.43034 -15.96848 -15.14797 -14.86598 -14.72171 -14.49853 -14.27863 -14.15507 -13.87465 -13.62150 -13.27103 -12.94019 -12.60142 -12.40113 -12.30531 -12.00570 -11.83460 -11.65661 -11.58248 -11.28052 -11.16164 -10.94795 -10.86384 -10.81385 -10.60435 -10.36060 -10.35558 -10.17702 -9.99361 -9.72937 -9.55788 -9.02815 -8.59938 -7.49989 -6.20227 -4.26850 2.50171 2.56847 3.22624 3.25839 3.30907 3.35718 3.85437 4.32714 4.42014 4.61397 4.62882 4.80152 4.83909 4.99607 5.11414 5.15315 5.25005 5.32610 5.42320 5.47388 5.50639 5.53178 5.63400 5.70017 5.76746 5.82855 5.96738 6.02954 6.06764 6.11048 6.15124 6.16942 6.28979 6.32620 6.40337 6.53244 6.62403 6.86144 7.16798 7.33575 7.74343 7.96279 8.15327 8.35363 8.71062 8.90490 9.39475 10.87193 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.004921 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.172115 B = 5688.622147 C = 6137.112161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C -0.070 4.070 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.135 4.135 10 C 0.518 3.482 11 O -0.549 6.549 12 N -0.504 5.504 13 N -0.397 5.397 14 C 0.247 3.753 15 C -0.533 4.533 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.892 5.892 19 Si 0.902 3.098 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.521 3.479 24 O -0.514 6.514 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.422 0.578 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 12.961 -10.006 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.079 4.079 3 C -0.089 4.089 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.156 4.156 8 C -0.155 4.155 9 C -0.175 4.175 10 C 0.305 3.695 11 O -0.426 6.426 12 N -0.252 5.252 13 N -0.224 5.224 14 C 0.129 3.871 15 C -0.572 4.572 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.530 5.530 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.207 1.207 23 C 0.306 3.694 24 O -0.387 6.387 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.265 0.735 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.858 12.948 -9.801 17.264 hybrid contribution 0.382 -1.360 0.232 1.432 sum -5.477 11.588 -9.569 15.995 Atomic orbital electron populations 1.21786 0.91298 1.02904 1.02772 1.20863 0.98548 0.95898 0.92618 1.21086 1.00281 0.91261 0.96247 1.21715 1.00926 0.95173 0.97579 1.21520 1.01056 0.95604 0.97392 1.21542 1.00679 0.98554 0.94833 1.21529 1.00467 0.95651 0.97966 1.21659 1.01690 0.95160 0.96947 1.21981 0.92311 1.03461 0.99735 1.20454 0.91032 0.76641 0.81408 1.90757 1.62492 1.53950 1.35361 1.45304 1.09986 1.70000 0.99938 1.48124 1.13489 1.56581 1.04187 1.19719 0.95424 0.93402 0.78542 1.21394 1.35829 0.93811 1.06180 0.92075 1.24914 0.94717 0.99168 0.95000 1.69922 1.37646 1.36447 1.09010 0.86373 0.78333 0.84114 0.78235 1.19719 1.20823 1.20688 1.19950 0.80323 0.79393 0.89712 1.90734 1.52985 1.59625 1.35372 0.91580 0.92074 0.90697 0.91029 0.91080 0.91550 0.92088 0.92069 0.92398 0.92030 0.92195 0.92017 0.91192 0.91246 0.87763 0.87001 0.73518 0.94262 0.91768 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 7.24 37.16 0.27 -1.36 16 2 C -0.08 -1.08 0.34 -155.65 -0.05 -1.13 16 3 C -0.07 -0.88 1.47 -90.62 -0.13 -1.02 16 4 C -0.12 -1.17 4.50 -26.73 -0.12 -1.29 16 5 C -0.12 -1.10 5.92 -26.73 -0.16 -1.25 16 6 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 7 C -0.12 -1.30 5.92 -26.73 -0.16 -1.45 16 8 C -0.12 -1.52 4.54 -26.73 -0.12 -1.64 16 9 C -0.14 -1.85 4.85 -27.88 -0.14 -1.99 16 10 C 0.52 8.67 7.04 -11.09 -0.08 8.60 16 11 O -0.55 -10.32 17.92 5.56 0.10 -10.22 16 12 N -0.50 -8.98 6.28 31.17 0.20 -8.79 16 13 N -0.40 -8.09 3.46 -61.54 -0.21 -8.30 16 14 C 0.25 6.01 5.36 -5.19 -0.03 5.99 16 15 C -0.53 -14.39 9.38 -34.44 -0.32 -14.72 16 16 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.52 10.05 5.33 -11.10 -0.06 9.99 16 24 O -0.51 -11.63 15.00 5.56 0.08 -11.54 16 25 H 0.07 0.63 6.35 -51.93 -0.33 0.30 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.99 6.27 -51.93 -0.33 0.67 16 28 H 0.07 1.01 7.51 -51.93 -0.39 0.62 16 29 H 0.07 0.65 6.35 -51.93 -0.33 0.32 16 30 H 0.07 0.65 6.32 -51.93 -0.33 0.32 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 38 H 0.07 1.11 6.75 -51.93 -0.35 0.76 16 39 H 0.10 1.38 8.09 -51.93 -0.42 0.96 16 40 H 0.11 1.27 6.08 -51.93 -0.32 0.96 16 41 H 0.42 7.09 8.80 -182.77 -1.61 5.48 16 42 H 0.04 0.96 8.10 -51.93 -0.42 0.53 16 43 H 0.06 1.73 7.43 -51.93 -0.39 1.34 16 44 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -30.66 337.84 -8.43 -39.09 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -8.05 Total: 3.82 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.35 Total: -0.86 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.72 Total: -41.58 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.18 Total: -21.76 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.66 -8.43 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.241 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds