Wall clock time and date at job start Tue Mar 31 2020 06:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47163 * 304.43899 * 3 2 1 5 5 C 1.53006 * 109.47168 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46975 * 300.00172 * 5 4 3 7 7 C 1.52999 * 109.47140 * 59.99593 * 6 5 4 8 8 C 1.52996 * 109.47514 * 300.00077 * 7 6 5 9 9 C 1.53007 * 109.46598 * 240.00279 * 2 1 3 10 10 C 1.50703 * 109.47169 * 191.75821 * 9 2 1 11 11 O 1.21276 * 119.84525 * 215.37624 * 10 9 2 12 12 N 1.34533 * 120.30970 * 35.40629 * 10 9 2 13 13 N 1.39862 * 120.70163 * 356.70377 * 12 10 9 14 14 C 1.46500 * 119.64827 * 165.27259 * 13 12 10 15 15 C 1.50701 * 109.47360 * 270.02637 * 14 13 12 16 16 H 1.08006 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00531 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00359 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46775 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46863 * 119.99673 * 19 17 15 22 22 H 1.48503 * 109.47063 * 239.99946 * 19 17 15 23 23 C 1.34522 * 120.70474 * 345.29568 * 13 12 10 24 24 O 1.21278 * 119.84843 * 176.72726 * 23 13 12 25 25 H 1.08998 * 109.47276 * 59.99280 * 1 2 3 26 26 H 1.09002 * 109.46983 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46504 * 299.99796 * 1 2 3 28 28 H 1.09000 * 109.46839 * 184.43435 * 3 2 1 29 29 H 1.08997 * 109.47169 * 60.00224 * 4 3 2 30 30 H 1.08999 * 109.47581 * 299.99826 * 4 3 2 31 31 H 1.09001 * 109.47336 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46839 * 59.99534 * 5 4 3 33 33 H 1.08992 * 109.47223 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.46574 * 299.99835 * 6 5 4 35 35 H 1.09000 * 109.46736 * 60.00411 * 7 6 5 36 36 H 1.09010 * 109.46937 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.47334 * 300.00452 * 8 7 6 38 38 H 1.09000 * 109.47356 * 180.02562 * 8 7 6 39 39 H 1.08995 * 109.46933 * 311.76406 * 9 2 1 40 40 H 1.08994 * 109.46787 * 71.76131 * 9 2 1 41 41 H 0.97007 * 119.64513 * 176.73350 * 12 10 9 42 42 H 1.09001 * 109.47484 * 30.02010 * 14 13 12 43 43 H 1.08999 * 109.47670 * 150.02233 * 14 13 12 44 44 H 0.97000 * 120.00115 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4410 2.1952 -1.1896 5 6 1.9515 3.6376 -1.1900 6 6 1.5352 4.3262 0.1113 7 6 2.1343 3.5734 1.3010 8 6 1.6238 2.1311 1.3013 9 6 2.0399 -0.7212 -1.2494 10 6 3.5189 -0.9770 -1.1134 11 8 4.2337 -0.9198 -2.0914 12 7 4.0497 -1.2692 0.0878 13 7 3.2542 -1.2733 1.2382 14 6 3.7568 -1.8976 2.4645 15 6 3.3607 -3.3514 2.4869 16 1 2.7911 -3.7686 1.6695 17 6 3.7243 -4.1488 3.5512 18 7 4.4174 -3.6408 4.5468 19 14 3.2327 -5.9508 3.5793 20 1 2.4626 -6.2729 2.3510 21 1 4.4525 -6.7958 3.6352 22 1 2.3916 -6.2159 4.7741 23 6 2.0324 -0.7105 1.2304 24 8 1.3319 -0.7749 2.2183 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 3.1271 1.4434 -0.0795 29 1 0.3539 2.1942 -1.1101 30 1 1.7379 1.7049 -2.1168 31 1 1.5243 4.1740 -2.0373 32 1 3.0386 3.6382 -1.2697 33 1 1.8993 5.3535 0.1113 34 1 0.4481 4.3256 0.1910 35 1 3.2214 3.5741 1.2212 36 1 1.8381 4.0643 2.2281 37 1 0.5367 2.1304 1.3810 38 1 2.0502 1.5949 2.1491 39 1 1.5157 -1.6704 -1.3603 40 1 1.8578 -0.1008 -2.1268 41 1 4.9943 -1.4788 0.1568 42 1 4.8434 -1.8167 2.4946 43 1 3.3307 -1.3916 3.3308 44 1 4.6736 -4.2018 5.2954 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601932059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:21 Heat of formation + Delta-G solvation = -84.735250 kcal Electronic energy + Delta-G solvation = -25619.036384 eV Core-core repulsion = 22149.468638 eV Total energy + Delta-G solvation = -3469.567746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.51211 -40.06284 -39.41738 -37.33864 -36.06495 -34.99703 -32.35768 -31.70311 -30.60973 -29.27689 -28.98959 -26.03210 -24.49154 -23.70210 -22.98060 -22.20207 -20.47724 -19.62010 -18.87217 -18.57667 -18.10845 -17.35826 -16.65646 -16.32695 -16.00675 -15.85638 -15.55310 -15.30014 -15.03950 -14.91381 -14.53977 -14.31527 -13.95407 -13.82235 -13.34713 -13.22378 -13.12205 -13.02581 -12.84209 -12.71194 -12.67873 -12.38359 -12.26453 -12.23910 -11.85416 -11.77040 -11.49105 -11.29700 -11.20640 -11.07232 -10.86997 -10.71500 -10.50312 -9.17606 -8.29221 -6.45359 0.94268 1.16423 1.35626 1.37434 1.49319 1.77136 2.33157 2.50719 3.00930 3.27976 3.50509 3.59341 3.70323 3.92547 3.98923 4.20676 4.30643 4.40019 4.45898 4.52168 4.60323 4.61111 4.63064 4.69166 4.80885 4.84574 4.89701 4.93463 5.03269 5.05539 5.19158 5.21751 5.29057 5.29433 5.32383 5.40684 5.44357 5.49515 5.56543 5.63137 5.79155 5.88277 6.59746 6.69034 6.81124 7.21185 7.36663 8.76791 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.004921 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.172115 B = 5688.622147 C = 6137.112161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.065 4.065 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.115 4.115 9 C -0.131 4.131 10 C 0.520 3.480 11 O -0.565 6.565 12 N -0.505 5.505 13 N -0.405 5.405 14 C 0.261 3.739 15 C -0.547 4.547 16 H 0.053 0.947 17 C 0.016 3.984 18 N -0.922 5.922 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.278 1.278 23 C 0.513 3.487 24 O -0.555 6.555 25 H 0.108 0.892 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.115 0.885 40 H 0.148 0.852 41 H 0.422 0.578 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 13.595 -12.524 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.068 4.068 3 C -0.084 4.084 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.170 4.170 10 C 0.309 3.691 11 O -0.443 6.443 12 N -0.254 5.254 13 N -0.230 5.230 14 C 0.142 3.858 15 C -0.586 4.586 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.561 5.561 19 Si 0.791 3.209 20 H -0.194 1.194 21 H -0.196 1.196 22 H -0.203 1.203 23 C 0.301 3.699 24 O -0.430 6.430 25 H 0.126 0.874 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.133 0.867 40 H 0.166 0.834 41 H 0.265 0.735 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.379 13.600 -12.348 19.796 hybrid contribution 0.905 -1.518 1.058 2.059 sum -6.474 12.082 -11.290 17.758 Atomic orbital electron populations 1.21832 0.89333 1.03009 1.04298 1.20910 0.99873 0.96119 0.89948 1.21087 0.99339 0.90471 0.97529 1.21740 1.01822 0.95250 0.96106 1.21535 1.00652 0.95234 0.98076 1.21526 1.01169 0.98787 0.93671 1.21523 0.99972 0.94584 0.99440 1.21607 1.01803 0.96101 0.95698 1.22117 0.89678 1.04702 1.00480 1.21005 0.92283 0.75497 0.80362 1.90753 1.63351 1.54665 1.35503 1.45362 1.09928 1.70561 0.99530 1.47909 1.14254 1.56575 1.04227 1.19177 0.94674 0.92336 0.79645 1.21602 1.35832 0.95007 1.06118 0.92922 1.25754 0.94575 1.03485 0.94559 1.70020 1.38434 1.38082 1.09584 0.85374 0.78315 0.78981 0.78196 1.19401 1.19631 1.20337 1.21034 0.79284 0.78532 0.91033 1.90699 1.53981 1.60948 1.37418 0.87399 0.92782 0.91744 0.92895 0.89220 0.90397 0.89838 0.93012 0.91180 0.90962 0.93182 0.91835 0.90521 0.95499 0.86665 0.83415 0.73483 0.94889 0.95223 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 7.24 71.98 0.52 -2.36 16 2 C -0.07 -1.78 0.34 -52.92 -0.02 -1.80 16 3 C -0.07 -1.57 1.47 -10.80 -0.02 -1.58 16 4 C -0.11 -1.82 4.50 30.60 0.14 -1.68 16 5 C -0.12 -1.77 5.92 30.60 0.18 -1.59 16 6 C -0.11 -1.78 5.92 30.59 0.18 -1.60 16 7 C -0.12 -2.50 5.92 30.59 0.18 -2.32 16 8 C -0.11 -2.98 4.54 30.59 0.14 -2.84 16 9 C -0.13 -3.25 4.85 29.85 0.14 -3.11 16 10 C 0.52 16.85 7.04 87.70 0.62 17.46 16 11 O -0.57 -20.39 17.92 -3.02 -0.05 -20.45 16 12 N -0.51 -18.30 6.28 -173.81 -1.09 -19.39 16 13 N -0.40 -17.14 3.46 -467.13 -1.62 -18.75 16 14 C 0.26 13.46 5.36 85.63 0.46 13.92 16 15 C -0.55 -30.43 9.38 25.60 0.24 -30.19 16 16 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 17 C 0.02 0.91 5.46 84.65 0.46 1.38 16 18 N -0.92 -53.48 13.29 21.45 0.28 -53.19 16 19 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 C 0.51 20.38 5.33 87.70 0.47 20.85 16 24 O -0.56 -26.33 15.00 -3.02 -0.05 -26.37 16 25 H 0.11 1.54 6.35 -2.39 -0.02 1.53 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.62 6.27 -2.39 -0.01 1.60 16 28 H 0.05 1.47 7.51 -2.39 -0.02 1.46 16 29 H 0.09 1.17 6.35 -2.39 -0.02 1.15 16 30 H 0.08 1.13 6.32 -2.39 -0.02 1.11 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.08 1.87 6.55 -2.39 -0.02 1.85 16 38 H 0.03 0.91 6.75 -2.39 -0.02 0.89 16 39 H 0.12 2.71 8.09 -2.39 -0.02 2.69 16 40 H 0.15 2.68 6.08 -2.39 -0.01 2.66 16 41 H 0.42 14.67 8.80 -213.47 -1.88 12.79 16 42 H 0.03 1.71 8.10 -2.39 -0.02 1.69 16 43 H 0.03 1.72 7.43 -2.39 -0.02 1.71 16 44 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -68.74 337.84 2.33 -66.40 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -0.87 Total: 21.36 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 3.70 Total: 4.53 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -2.42 Total: -91.34 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.10 Total: -46.82 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.74 2.33 -66.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.332 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds