Wall clock time and date at job start Tue Mar 31 2020 06:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.27565 * 126.41692 * 2 1 4 4 N 1.39156 * 113.16149 * 179.97438 * 3 2 1 5 5 C 1.46495 * 124.43609 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.54291 * 180.15013 * 5 4 3 7 7 C 1.53181 * 109.54902 * 59.97037 * 5 4 3 8 8 C 1.53090 * 109.16481 * 183.15401 * 7 5 4 9 9 O 1.42895 * 109.41746 * 57.60799 * 8 7 5 10 10 C 1.42899 * 114.09889 * 298.84325 * 9 8 7 11 11 C 1.52999 * 109.48122 * 181.14022 * 10 9 8 12 12 C 1.53003 * 109.48062 * 301.16182 * 10 9 8 13 13 C 1.53088 * 109.41518 * 61.15705 * 10 9 8 14 14 C 1.34949 * 111.12055 * 359.97438 * 4 3 2 15 15 O 1.21305 * 127.49528 * 179.97438 * 14 4 3 16 16 C 1.51442 * 126.41121 * 179.68532 * 2 1 3 17 17 H 1.08997 * 110.61122 * 61.52225 * 16 2 1 18 18 C 1.53005 * 110.60619 * 298.54910 * 16 2 1 19 19 C 1.50703 * 109.46953 * 175.00229 * 18 16 2 20 20 H 1.08006 * 119.99581 * 0.02562 * 19 18 16 21 21 C 1.37873 * 120.00002 * 179.97438 * 19 18 16 22 22 N 1.31514 * 120.00294 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47068 * 60.00761 * 23 21 19 25 25 H 1.48506 * 109.47052 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47630 * 300.00812 * 23 21 19 27 27 H 1.09001 * 109.46953 * 0.02572 * 1 2 3 28 28 H 1.09000 * 109.47318 * 120.02170 * 1 2 3 29 29 H 1.09000 * 109.47161 * 240.02800 * 1 2 3 30 30 H 1.08997 * 109.52228 * 303.05964 * 7 5 4 31 31 H 1.09002 * 109.51547 * 63.24281 * 7 5 4 32 32 H 1.08999 * 109.47488 * 177.59515 * 8 7 5 33 33 H 1.09002 * 109.47784 * 297.62504 * 8 7 5 34 34 H 1.09004 * 109.47181 * 59.99838 * 11 10 9 35 35 H 1.09000 * 109.47216 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.47207 * 299.99930 * 11 10 9 37 37 H 1.08998 * 109.47134 * 59.99905 * 12 10 9 38 38 H 1.09004 * 109.47212 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.46927 * 299.99800 * 12 10 9 40 40 H 1.09002 * 109.52203 * 182.48443 * 13 10 9 41 41 H 1.08998 * 109.52698 * 62.29750 * 13 10 9 42 42 H 1.08998 * 109.47370 * 295.00210 * 18 16 2 43 43 H 1.08994 * 109.47276 * 55.00534 * 18 16 2 44 44 H 0.96993 * 119.99992 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2644 1.0265 0.0000 4 7 3.6188 0.7075 0.0006 5 6 4.7022 1.6936 0.0012 6 1 5.6633 1.1793 -0.0011 7 6 4.5944 2.5726 1.2511 8 6 5.6819 3.6491 1.2037 9 8 5.5388 4.4166 0.0069 10 6 5.6775 3.6554 -1.1945 11 6 5.5344 4.5809 -2.4044 12 6 7.0552 2.9904 -1.2210 13 6 4.5898 2.5792 -1.2435 14 6 3.8035 -0.6293 0.0016 15 8 4.8579 -1.2291 0.0018 16 6 2.4060 -1.2188 0.0067 17 1 2.2423 -1.8212 -0.8868 18 6 2.1748 -2.0515 1.2693 19 6 2.9894 -3.3170 1.1925 20 1 3.6103 -3.5080 0.3296 21 6 2.9429 -4.2304 2.2242 22 7 2.1873 -3.9976 3.2751 23 14 3.9521 -5.7994 2.1286 24 1 5.3926 -5.4555 2.0188 25 1 3.7279 -6.6076 3.3542 26 1 3.5380 -6.5827 0.9370 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5142 -0.8898 29 1 -0.3633 -0.5134 0.8902 30 1 3.6135 3.0468 1.2793 31 1 4.7287 1.9580 2.1412 32 1 5.5831 4.3038 2.0695 33 1 6.6634 3.1751 1.2163 34 1 6.3082 5.3478 -2.3688 35 1 5.6407 4.0002 -3.3207 36 1 4.5527 5.0543 -2.3856 37 1 7.1569 2.3308 -0.3592 38 1 7.1611 2.4102 -2.1377 39 1 7.8294 3.7569 -1.1852 40 1 4.7208 1.9694 -2.1375 41 1 3.6087 3.0535 -1.2657 42 1 2.4782 -1.4766 2.1443 43 1 1.1176 -2.3042 1.3493 44 1 2.1544 -4.6404 4.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601958382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:00 Heat of formation + Delta-G solvation = -42.518496 kcal Electronic energy + Delta-G solvation = -24846.274830 eV Core-core repulsion = 21378.537740 eV Total energy + Delta-G solvation = -3467.737090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97003 -39.77678 -36.78529 -34.93476 -33.73049 -33.18118 -31.47628 -30.37014 -28.57635 -27.59175 -27.32983 -25.93324 -23.96340 -22.54176 -21.78581 -20.24672 -19.34938 -18.63162 -16.89338 -16.32992 -16.23700 -15.64876 -15.39081 -14.92919 -14.58270 -14.53204 -14.35092 -13.72609 -13.66174 -13.21943 -13.15478 -12.95242 -12.59471 -12.32527 -12.29294 -12.15498 -12.07561 -11.81001 -11.59445 -11.56144 -11.46550 -11.24551 -11.18407 -10.94772 -10.71454 -10.54383 -10.24700 -10.22714 -9.70485 -9.53374 -9.31012 -8.79421 -8.37534 -8.11449 -6.04197 -4.05575 2.18353 2.78838 3.21627 3.35653 3.38701 3.44596 3.62300 4.34384 4.45620 4.60884 4.65662 4.69762 4.79242 4.90580 5.05876 5.14569 5.20654 5.29329 5.33183 5.40839 5.47255 5.50587 5.57976 5.60368 5.68630 5.75894 5.80713 5.87426 5.89772 5.93745 5.97206 6.07211 6.10818 6.15026 6.24949 6.42408 6.68941 6.88597 7.15614 7.40519 7.45790 7.93721 8.19987 8.27994 8.53700 8.99079 9.58793 11.07040 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.004264 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.793700 B = 6565.328598 C = 7181.490715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.099 3.901 3 N -0.254 5.254 4 N -0.478 5.478 5 C 0.172 3.828 6 H 0.099 0.901 7 C -0.164 4.164 8 C 0.063 3.937 9 O -0.373 6.373 10 C 0.114 3.886 11 C -0.135 4.135 12 C -0.183 4.183 13 C -0.146 4.146 14 C 0.510 3.490 15 O -0.489 6.489 16 C -0.131 4.131 17 H 0.120 0.880 18 C 0.056 3.944 19 C -0.516 4.516 20 H 0.063 0.937 21 C 0.060 3.940 22 N -0.898 5.898 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.276 1.276 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.018 0.982 43 H 0.038 0.962 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 15.955 -8.575 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 N -0.061 5.061 4 N -0.299 5.299 5 C 0.070 3.930 6 H 0.117 0.883 7 C -0.202 4.202 8 C -0.014 4.014 9 O -0.292 6.292 10 C 0.075 3.925 11 C -0.192 4.192 12 C -0.241 4.241 13 C -0.185 4.185 14 C 0.298 3.702 15 O -0.360 6.360 16 C -0.155 4.155 17 H 0.138 0.862 18 C 0.018 3.982 19 C -0.554 4.554 20 H 0.081 0.919 21 C -0.141 4.141 22 N -0.537 5.537 23 Si 0.723 3.277 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.618 16.798 -8.414 18.969 hybrid contribution 0.728 -2.064 0.185 2.196 sum 3.346 14.735 -8.228 17.205 Atomic orbital electron populations 1.20300 0.85404 1.03428 1.04129 1.25441 0.97280 0.91862 0.94772 1.74445 0.89021 1.26884 1.15753 1.49861 1.02523 1.06038 1.71448 1.20981 0.88556 0.88491 0.95016 0.88305 1.22560 1.01476 0.97891 0.98303 1.22568 0.97326 0.93818 0.87711 1.87949 1.92851 1.35229 1.13168 1.21461 0.93650 0.91262 0.86162 1.21733 1.02944 0.99273 0.95294 1.22504 0.97030 1.01407 1.03131 1.22529 1.00663 0.97249 0.98060 1.21490 0.92066 0.81903 0.74774 1.90706 1.31224 1.65914 1.48126 1.22062 0.90648 0.96492 1.06288 0.86238 1.18879 0.98502 0.93266 0.87529 1.21134 1.26355 1.03033 1.04849 0.91922 1.24946 0.95476 0.98505 0.95198 1.69938 1.39435 1.36384 1.07962 0.86594 0.80957 0.82902 0.77252 1.20146 1.21322 1.20126 0.90704 0.89777 0.89003 0.89732 0.90463 0.88453 0.92716 0.91767 0.91140 0.91695 0.91745 0.91279 0.91626 0.90891 0.89733 0.96320 0.94410 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.47 36.01 0.38 -0.53 16 2 C 0.10 1.67 6.93 -78.72 -0.55 1.13 16 3 N -0.25 -4.43 11.75 35.53 0.42 -4.01 16 4 N -0.48 -8.88 3.25 -53.23 -0.17 -9.05 16 5 C 0.17 2.67 2.65 -67.75 -0.18 2.49 16 6 H 0.10 1.61 6.17 -51.93 -0.32 1.29 16 7 C -0.16 -2.29 5.64 -26.59 -0.15 -2.44 16 8 C 0.06 0.73 6.51 37.20 0.24 0.97 16 9 O -0.37 -4.66 10.24 -35.23 -0.36 -5.02 16 10 C 0.11 1.29 1.11 -90.57 -0.10 1.19 16 11 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 12 C -0.18 -1.90 7.94 37.16 0.29 -1.61 16 13 C -0.15 -1.92 4.42 -26.59 -0.12 -2.04 16 14 C 0.51 11.23 7.60 -10.43 -0.08 11.15 16 15 O -0.49 -12.34 16.80 5.54 0.09 -12.24 16 16 C -0.13 -2.71 2.96 -92.08 -0.27 -2.98 16 17 H 0.12 2.35 8.14 -51.93 -0.42 1.93 16 18 C 0.06 1.41 4.49 -27.88 -0.13 1.28 16 19 C -0.52 -14.58 8.45 -34.44 -0.29 -14.87 16 20 H 0.06 1.80 7.43 -52.48 -0.39 1.41 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 23 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.15 8.02 -51.93 -0.42 0.73 16 30 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.72 4.98 -51.93 -0.26 0.46 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 42 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 43 H 0.04 0.93 8.00 -51.93 -0.42 0.52 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -32.92 352.84 -6.89 -39.80 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.18 Total: -0.60 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.72 Total: -5.56 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.98 Total: -38.88 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.27 Total: -17.26 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.92 -6.89 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601958382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.714 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds