Wall clock time and date at job start Tue Mar 31 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27572 * 126.41585 * 2 1 4 4 N 1.39144 * 113.16673 * 179.97438 * 3 2 1 5 5 C 1.46500 * 124.44361 * 179.97438 * 4 3 2 6 6 H 1.08992 * 109.54488 * 179.84858 * 5 4 3 7 7 C 1.53178 * 109.54274 * 300.03139 * 5 4 3 8 8 C 1.53093 * 109.16255 * 176.84478 * 7 5 4 9 9 O 1.42904 * 109.42351 * 302.38111 * 8 7 5 10 10 C 1.42930 * 114.08305 * 61.15476 * 9 8 7 11 11 C 1.53000 * 109.47525 * 178.86523 * 10 9 8 12 12 C 1.52997 * 109.48808 * 58.84013 * 10 9 8 13 13 C 1.53096 * 109.41898 * 298.84863 * 10 9 8 14 14 C 1.34962 * 111.12251 * 0.26904 * 4 3 2 15 15 O 1.21297 * 127.50104 * 179.70959 * 14 4 3 16 16 C 1.51436 * 126.42043 * 179.97438 * 2 1 3 17 17 H 1.08999 * 110.61027 * 298.71024 * 16 2 1 18 18 C 1.53009 * 110.60620 * 61.51730 * 16 2 1 19 19 C 1.50702 * 109.47052 * 185.00135 * 18 16 2 20 20 H 1.07994 * 119.99624 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99762 * 179.97438 * 19 18 16 22 22 N 1.31507 * 119.99665 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99868 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47217 * 89.99969 * 23 21 19 25 25 H 1.48502 * 109.46796 * 209.99879 * 23 21 19 26 26 H 1.48504 * 109.47253 * 329.99795 * 23 21 19 27 27 H 1.08999 * 109.47140 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47450 * 120.02485 * 1 2 3 29 29 H 1.09008 * 109.46877 * 240.02729 * 1 2 3 30 30 H 1.09000 * 109.52619 * 56.93738 * 7 5 4 31 31 H 1.08997 * 109.57176 * 296.77932 * 7 5 4 32 32 H 1.09002 * 109.48198 * 62.37219 * 8 7 5 33 33 H 1.08999 * 109.48029 * 182.39833 * 8 7 5 34 34 H 1.09003 * 109.47032 * 179.97438 * 11 10 9 35 35 H 1.08995 * 109.47048 * 299.94772 * 11 10 9 36 36 H 1.09003 * 109.47206 * 59.94792 * 11 10 9 37 37 H 1.09008 * 109.47110 * 300.04677 * 12 10 9 38 38 H 1.08998 * 109.47372 * 60.04644 * 12 10 9 39 39 H 1.08995 * 109.46977 * 180.02562 * 12 10 9 40 40 H 1.08999 * 109.52155 * 297.70346 * 13 10 9 41 41 H 1.09004 * 109.51758 * 177.51891 * 13 10 9 42 42 H 1.08997 * 109.47098 * 305.00408 * 18 16 2 43 43 H 1.09000 * 109.46993 * 65.00141 * 18 16 2 44 44 H 0.97004 * 119.99585 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7077 0.0006 5 6 4.7022 1.6938 0.0002 6 1 5.6632 1.1796 0.0035 7 6 4.5951 2.5721 -1.2502 8 6 5.6826 3.6487 -1.2027 9 8 5.5385 4.4171 -0.0065 10 6 5.6764 3.6563 1.1956 11 6 5.5324 4.5826 2.4048 12 6 7.0540 2.9913 1.2235 13 6 4.5888 2.5800 1.2444 14 6 3.8036 -0.6292 -0.0049 15 8 4.8580 -1.2288 -0.0109 16 6 2.4061 -1.2186 0.0005 17 1 2.2395 -1.8179 0.8956 18 6 2.1762 -2.0580 -1.2579 19 6 2.9909 -3.3230 -1.1737 20 1 3.6102 -3.5098 -0.3089 21 6 2.9446 -4.2424 -2.2002 22 7 3.6559 -5.3460 -2.1270 23 14 1.8727 -3.9194 -3.6956 24 1 2.6596 -3.1866 -4.7198 25 1 1.4079 -5.2121 -4.2598 26 1 0.6984 -3.1030 -3.2959 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5142 -0.8897 29 1 -0.3633 -0.5135 0.8903 30 1 3.6141 3.0463 -1.2795 31 1 4.7294 1.9578 -2.1405 32 1 6.6641 3.1748 -1.2144 33 1 5.5844 4.3029 -2.0690 34 1 5.6371 4.0022 3.3216 35 1 6.3068 5.3488 2.3699 36 1 4.5510 5.0566 2.3846 37 1 7.1567 2.3317 0.3617 38 1 7.8283 3.7577 1.1888 39 1 7.1587 2.4108 2.1401 40 1 3.6076 3.0544 1.2656 41 1 4.7192 1.9708 2.1388 42 1 1.1191 -2.3112 -1.3377 43 1 2.4804 -1.4877 -2.1356 44 1 3.6236 -5.9926 -2.8493 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601958417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:04 Heat of formation + Delta-G solvation = -37.431448 kcal Electronic energy + Delta-G solvation = -24896.909433 eV Core-core repulsion = 21429.392933 eV Total energy + Delta-G solvation = -3467.516499 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05177 -39.82323 -36.85207 -35.01013 -33.75673 -33.14729 -31.58424 -30.71358 -28.63570 -27.63763 -27.39655 -26.31184 -23.98805 -22.36434 -21.70982 -20.24963 -19.37497 -18.72836 -17.07489 -16.48419 -16.34492 -15.69017 -15.57771 -14.94225 -14.63607 -14.49601 -14.29170 -13.80297 -13.71772 -13.31722 -13.20841 -13.02593 -12.62427 -12.59583 -12.32496 -12.25039 -12.11925 -11.97777 -11.83743 -11.64181 -11.58783 -11.35910 -11.23750 -11.03645 -10.74033 -10.47061 -10.28074 -10.07082 -9.83030 -9.52688 -9.42761 -8.84172 -8.55791 -8.19670 -6.04852 -4.03965 2.07767 2.70988 3.15099 3.26929 3.33994 3.34760 3.59468 4.26577 4.40730 4.53967 4.61289 4.63601 4.73557 4.85647 5.00504 5.10821 5.16348 5.25606 5.27099 5.37870 5.40439 5.47368 5.54492 5.58830 5.64716 5.65760 5.74807 5.77666 5.84116 5.88410 5.92493 5.95816 6.05191 6.06982 6.18075 6.27119 6.58265 6.79072 6.90727 7.03528 7.12533 7.64683 8.11959 8.47921 8.49206 9.04630 9.54179 11.08534 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021578 B = 0.004324 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.320566 B = 6474.588373 C = 6847.762071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.093 3.907 3 N -0.250 5.250 4 N -0.479 5.479 5 C 0.172 3.828 6 H 0.101 0.899 7 C -0.164 4.164 8 C 0.063 3.937 9 O -0.373 6.373 10 C 0.114 3.886 11 C -0.135 4.135 12 C -0.184 4.184 13 C -0.146 4.146 14 C 0.508 3.492 15 O -0.478 6.478 16 C -0.122 4.122 17 H 0.127 0.873 18 C 0.019 3.981 19 C -0.518 4.518 20 H 0.081 0.919 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.873 3.127 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.265 1.265 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.012 0.988 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 19.201 6.179 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 N -0.056 5.056 4 N -0.300 5.300 5 C 0.069 3.931 6 H 0.118 0.882 7 C -0.202 4.202 8 C -0.014 4.014 9 O -0.292 6.292 10 C 0.075 3.925 11 C -0.192 4.192 12 C -0.241 4.241 13 C -0.185 4.185 14 C 0.296 3.704 15 O -0.347 6.347 16 C -0.146 4.146 17 H 0.144 0.856 18 C -0.019 4.019 19 C -0.555 4.555 20 H 0.099 0.901 21 C -0.131 4.131 22 N -0.535 5.535 23 Si 0.700 3.300 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.189 1.189 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.031 0.969 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.500 19.941 6.092 20.857 hybrid contribution -0.283 -1.163 -0.996 1.557 sum -0.783 18.778 5.097 19.474 Atomic orbital electron populations 1.20299 0.85398 1.03558 1.04043 1.25439 0.97275 0.91839 0.95451 1.74430 0.89163 1.26898 1.15144 1.49890 1.02425 1.06096 1.71609 1.21003 0.88553 0.88474 0.95047 0.88160 1.22564 1.01495 0.97927 0.98264 1.22566 0.97337 0.93778 0.87763 1.87960 1.92851 1.35209 1.13166 1.21472 0.93675 0.91256 0.86134 1.21733 1.02933 0.99276 0.95307 1.22504 0.96987 1.01421 1.03187 1.22529 1.00658 0.97245 0.98062 1.21416 0.91996 0.81857 0.75180 1.90758 1.31009 1.65690 1.47217 1.21822 0.91021 0.96186 1.05551 0.85598 1.19345 0.98422 0.94874 0.89256 1.21036 1.26617 1.00942 1.06953 0.90081 1.24951 0.95275 0.94942 0.97890 1.69904 1.40706 1.09782 1.33132 0.86891 0.81514 0.77829 0.83724 1.20402 1.21119 1.18916 0.90556 0.89341 0.89582 0.89771 0.90527 0.92651 0.88473 0.91100 0.91748 0.91712 0.91736 0.91601 0.91216 0.89753 0.90797 0.94575 0.96928 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.47 36.01 0.38 -0.46 16 2 C 0.09 1.48 6.93 -78.73 -0.55 0.93 16 3 N -0.25 -4.14 11.75 35.53 0.42 -3.72 16 4 N -0.48 -8.61 3.25 -53.23 -0.17 -8.79 16 5 C 0.17 2.59 2.65 -67.75 -0.18 2.41 16 6 H 0.10 1.60 6.17 -51.93 -0.32 1.28 16 7 C -0.16 -2.20 5.64 -26.59 -0.15 -2.35 16 8 C 0.06 0.70 6.51 37.21 0.24 0.94 16 9 O -0.37 -4.54 10.24 -35.23 -0.36 -4.90 16 10 C 0.11 1.26 1.11 -90.57 -0.10 1.16 16 11 C -0.14 -1.23 8.85 37.16 0.33 -0.90 16 12 C -0.18 -1.88 7.94 37.16 0.29 -1.59 16 13 C -0.15 -1.87 4.42 -26.59 -0.12 -1.98 16 14 C 0.51 11.00 7.59 -10.42 -0.08 10.92 16 15 O -0.48 -12.14 16.77 5.54 0.09 -12.04 16 16 C -0.12 -2.43 2.98 -92.08 -0.27 -2.70 16 17 H 0.13 2.42 8.14 -51.93 -0.42 2.00 16 18 C 0.02 0.45 3.55 -27.88 -0.10 0.35 16 19 C -0.52 -14.76 8.98 -34.44 -0.31 -15.07 16 20 H 0.08 2.57 7.68 -52.49 -0.40 2.17 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 22 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 23 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.97 8.04 -51.93 -0.42 0.56 16 29 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.08 1.18 8.13 -51.93 -0.42 0.76 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.58 6.34 -51.93 -0.33 0.25 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.71 4.98 -51.92 -0.26 0.45 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.78 7.07 -51.93 -0.37 0.41 16 43 H 0.01 0.30 7.54 -51.93 -0.39 -0.09 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -34.00 349.21 -6.51 -40.52 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.15 Total: 0.50 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.71 Total: -6.36 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 1.02 Total: -39.64 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.27 Total: -16.94 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.00 -6.51 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601958417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.087 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds