Wall clock time and date at job start Tue Mar 31 2020 06:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27572 * 126.41585 * 2 1 4 4 N 1.39144 * 113.16673 * 179.97438 * 3 2 1 5 5 C 1.46500 * 124.44361 * 179.97438 * 4 3 2 6 6 H 1.08992 * 109.54488 * 179.84858 * 5 4 3 7 7 C 1.53178 * 109.54274 * 300.03139 * 5 4 3 8 8 C 1.53093 * 109.16255 * 176.84478 * 7 5 4 9 9 O 1.42904 * 109.42351 * 302.38111 * 8 7 5 10 10 C 1.42930 * 114.08305 * 61.15476 * 9 8 7 11 11 C 1.53000 * 109.47525 * 178.86523 * 10 9 8 12 12 C 1.52997 * 109.48808 * 58.84013 * 10 9 8 13 13 C 1.53096 * 109.41898 * 298.84863 * 10 9 8 14 14 C 1.34962 * 111.12251 * 0.26904 * 4 3 2 15 15 O 1.21297 * 127.50104 * 179.70959 * 14 4 3 16 16 C 1.51436 * 126.42043 * 179.97438 * 2 1 3 17 17 H 1.08999 * 110.61027 * 298.71024 * 16 2 1 18 18 C 1.53009 * 110.60620 * 61.51730 * 16 2 1 19 19 C 1.50702 * 109.47052 * 185.00135 * 18 16 2 20 20 H 1.07994 * 119.99624 * 0.02562 * 19 18 16 21 21 C 1.37880 * 119.99762 * 179.97438 * 19 18 16 22 22 N 1.31507 * 119.99665 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99868 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47217 * 89.99969 * 23 21 19 25 25 H 1.48502 * 109.46796 * 209.99879 * 23 21 19 26 26 H 1.48504 * 109.47253 * 329.99795 * 23 21 19 27 27 H 1.08999 * 109.47140 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47450 * 120.02485 * 1 2 3 29 29 H 1.09008 * 109.46877 * 240.02729 * 1 2 3 30 30 H 1.09000 * 109.52619 * 56.93738 * 7 5 4 31 31 H 1.08997 * 109.57176 * 296.77932 * 7 5 4 32 32 H 1.09002 * 109.48198 * 62.37219 * 8 7 5 33 33 H 1.08999 * 109.48029 * 182.39833 * 8 7 5 34 34 H 1.09003 * 109.47032 * 179.97438 * 11 10 9 35 35 H 1.08995 * 109.47048 * 299.94772 * 11 10 9 36 36 H 1.09003 * 109.47206 * 59.94792 * 11 10 9 37 37 H 1.09008 * 109.47110 * 300.04677 * 12 10 9 38 38 H 1.08998 * 109.47372 * 60.04644 * 12 10 9 39 39 H 1.08995 * 109.46977 * 180.02562 * 12 10 9 40 40 H 1.08999 * 109.52155 * 297.70346 * 13 10 9 41 41 H 1.09004 * 109.51758 * 177.51891 * 13 10 9 42 42 H 1.08997 * 109.47098 * 305.00408 * 18 16 2 43 43 H 1.09000 * 109.46993 * 65.00141 * 18 16 2 44 44 H 0.97004 * 119.99585 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7077 0.0006 5 6 4.7022 1.6938 0.0002 6 1 5.6632 1.1796 0.0035 7 6 4.5951 2.5721 -1.2502 8 6 5.6826 3.6487 -1.2027 9 8 5.5385 4.4171 -0.0065 10 6 5.6764 3.6563 1.1956 11 6 5.5324 4.5826 2.4048 12 6 7.0540 2.9913 1.2235 13 6 4.5888 2.5800 1.2444 14 6 3.8036 -0.6292 -0.0049 15 8 4.8580 -1.2288 -0.0109 16 6 2.4061 -1.2186 0.0005 17 1 2.2395 -1.8179 0.8956 18 6 2.1762 -2.0580 -1.2579 19 6 2.9909 -3.3230 -1.1737 20 1 3.6102 -3.5098 -0.3089 21 6 2.9446 -4.2424 -2.2002 22 7 3.6559 -5.3460 -2.1270 23 14 1.8727 -3.9194 -3.6956 24 1 2.6596 -3.1866 -4.7198 25 1 1.4079 -5.2121 -4.2598 26 1 0.6984 -3.1030 -3.2959 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5142 -0.8897 29 1 -0.3633 -0.5135 0.8903 30 1 3.6141 3.0463 -1.2795 31 1 4.7294 1.9578 -2.1405 32 1 6.6641 3.1748 -1.2144 33 1 5.5844 4.3029 -2.0690 34 1 5.6371 4.0022 3.3216 35 1 6.3068 5.3488 2.3699 36 1 4.5510 5.0566 2.3846 37 1 7.1567 2.3317 0.3617 38 1 7.8283 3.7577 1.1888 39 1 7.1587 2.4108 2.1401 40 1 3.6076 3.0544 1.2656 41 1 4.7192 1.9708 2.1388 42 1 1.1191 -2.3112 -1.3377 43 1 2.4804 -1.4877 -2.1356 44 1 3.6236 -5.9926 -2.8493 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601958417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:03 Heat of formation + Delta-G solvation = -60.690444 kcal Electronic energy + Delta-G solvation = -24897.918019 eV Core-core repulsion = 21429.392933 eV Total energy + Delta-G solvation = -3468.525085 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.48315 -40.87360 -38.53543 -36.36836 -35.08803 -34.63165 -33.06513 -32.32849 -29.62895 -28.81261 -28.29655 -27.98491 -25.17380 -23.95837 -22.97802 -21.79347 -20.62749 -20.01685 -18.89530 -18.07292 -17.40154 -17.06276 -16.80739 -16.34405 -16.03419 -15.96407 -15.67695 -15.19814 -14.92192 -14.64068 -14.48951 -14.26560 -14.07914 -13.82850 -13.52917 -13.36838 -13.17598 -13.04982 -12.99652 -12.89008 -12.81620 -12.70787 -12.45433 -12.37997 -12.15441 -11.88922 -11.75567 -11.64538 -11.46860 -11.22450 -10.80865 -10.65006 -10.42963 -9.62949 -8.28436 -6.34174 0.65425 1.32686 1.35129 1.36854 1.47773 1.58365 2.34530 2.71380 2.89952 3.07163 3.20809 3.53894 3.59823 3.71605 3.85409 3.92163 3.99735 4.11402 4.15901 4.19210 4.31129 4.50557 4.54710 4.55259 4.68156 4.74341 4.75070 4.82558 4.89274 4.90204 4.93062 4.96913 5.00011 5.00732 5.13024 5.14493 5.24420 5.30815 5.31833 5.48784 5.62082 6.21546 6.24508 6.67601 6.73568 6.88514 7.27989 8.89210 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021578 B = 0.004324 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.320566 B = 6474.588373 C = 6847.762071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.116 3.884 3 N -0.253 5.253 4 N -0.474 5.474 5 C 0.160 3.840 6 H 0.084 0.916 7 C -0.156 4.156 8 C 0.066 3.934 9 O -0.379 6.379 10 C 0.114 3.886 11 C -0.132 4.132 12 C -0.183 4.183 13 C -0.136 4.136 14 C 0.492 3.508 15 O -0.535 6.535 16 C -0.130 4.130 17 H 0.128 0.872 18 C 0.028 3.972 19 C -0.525 4.525 20 H 0.027 0.973 21 C 0.003 3.997 22 N -0.952 5.952 23 Si 0.948 3.052 24 H -0.280 1.280 25 H -0.280 1.280 26 H -0.223 1.223 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.007 0.993 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.018 21.946 5.676 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 N -0.059 5.059 4 N -0.293 5.293 5 C 0.059 3.941 6 H 0.102 0.898 7 C -0.195 4.195 8 C -0.011 4.011 9 O -0.298 6.298 10 C 0.074 3.926 11 C -0.190 4.190 12 C -0.240 4.240 13 C -0.174 4.174 14 C 0.280 3.720 15 O -0.409 6.409 16 C -0.154 4.154 17 H 0.145 0.855 18 C -0.011 4.011 19 C -0.563 4.563 20 H 0.045 0.955 21 C -0.193 4.193 22 N -0.593 5.593 23 Si 0.770 3.230 24 H -0.206 1.206 25 H -0.206 1.206 26 H -0.146 1.146 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.025 0.975 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.183 22.755 5.614 23.652 hybrid contribution 0.597 -2.046 -0.746 2.258 sum -2.587 20.709 4.869 21.430 Atomic orbital electron populations 1.20610 0.81242 1.05777 1.05704 1.26059 0.99067 0.88934 0.93553 1.74534 0.88110 1.26688 1.16608 1.50032 1.03800 1.05313 1.70132 1.21278 0.87113 0.88343 0.97379 0.89845 1.22500 1.02310 0.97978 0.96679 1.22634 0.96604 0.93481 0.88399 1.87962 1.92816 1.35482 1.13529 1.21587 0.93147 0.91138 0.86724 1.21746 1.03366 0.99216 0.94625 1.22503 0.97082 1.01603 1.02843 1.22452 1.01317 0.97152 0.96484 1.21800 0.92034 0.83313 0.74847 1.90712 1.32888 1.67160 1.50135 1.21787 0.91511 0.97752 1.04305 0.85472 1.19196 0.98834 0.92580 0.90467 1.21275 1.26383 1.03376 1.05290 0.95462 1.26032 0.97045 0.94392 1.01843 1.70090 1.43163 1.11344 1.34683 0.85715 0.80479 0.78422 0.78402 1.20574 1.20595 1.14564 0.88121 0.88182 0.87106 0.90002 0.91726 0.92146 0.86256 0.89922 0.90699 0.91650 0.93062 0.90179 0.90811 0.90029 0.91174 0.91480 0.97516 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.47 71.24 0.75 -0.58 16 2 C 0.12 3.40 6.93 46.83 0.32 3.72 16 3 N -0.25 -7.96 11.75 -40.85 -0.48 -8.44 16 4 N -0.47 -17.16 3.25 -440.59 -1.43 -18.60 16 5 C 0.16 4.91 2.65 45.11 0.12 5.03 16 6 H 0.08 2.83 6.17 -2.39 -0.01 2.82 16 7 C -0.16 -4.12 5.64 30.68 0.17 -3.95 16 8 C 0.07 1.39 6.51 72.01 0.47 1.86 16 9 O -0.38 -8.53 10.24 -148.98 -1.53 -10.05 16 10 C 0.11 2.36 1.11 -10.76 -0.01 2.35 16 11 C -0.13 -2.12 8.85 71.98 0.64 -1.48 16 12 C -0.18 -3.61 7.94 71.98 0.57 -3.04 16 13 C -0.14 -3.38 4.42 30.69 0.14 -3.25 16 14 C 0.49 22.10 7.59 87.94 0.67 22.77 16 15 O -0.53 -29.16 16.77 -3.08 -0.05 -29.21 16 16 C -0.13 -5.14 2.98 -11.74 -0.03 -5.18 16 17 H 0.13 4.96 8.14 -2.39 -0.02 4.94 16 18 C 0.03 1.26 3.55 29.85 0.11 1.36 16 19 C -0.53 -30.96 8.98 25.60 0.23 -30.73 16 20 H 0.03 1.85 7.68 -2.91 -0.02 1.82 16 21 C 0.00 0.20 5.47 84.66 0.46 0.66 16 22 N -0.95 -61.58 13.96 21.45 0.30 -61.28 16 23 Si 0.95 43.41 27.47 68.60 1.88 45.30 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.22 -8.69 6.54 99.48 0.65 -8.04 16 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.65 8.04 -2.39 -0.02 1.63 16 29 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.22 6.34 -2.39 -0.02 1.21 16 33 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 37 H 0.05 1.14 4.98 -2.38 -0.01 1.13 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.66 7.07 -2.39 -0.02 2.64 16 43 H 0.01 0.31 7.54 -2.39 -0.02 0.29 16 44 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -78.84 349.21 4.21 -74.63 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.92 Total: 18.10 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 4.59 Total: -10.44 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -1.61 Total: -88.32 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.58 Total: -39.27 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal Total: -78.84 4.21 -74.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601958417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.941 kcal (2) G-P(sol) polarization free energy of solvation -78.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds