Wall clock time and date at job start Tue Mar 31 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.27570 * 126.41504 * 2 1 4 4 N 1.39151 * 113.16372 * 180.22214 * 3 2 1 5 5 C 1.46493 * 124.43964 * 179.76949 * 4 3 2 6 6 H 1.09008 * 109.54339 * 179.87841 * 5 4 3 7 7 C 1.53185 * 109.54158 * 59.70594 * 5 4 3 8 8 C 1.53087 * 109.16118 * 183.06231 * 7 5 4 9 9 O 1.42900 * 109.41968 * 57.60918 * 8 7 5 10 10 C 1.42905 * 114.09428 * 298.84097 * 9 8 7 11 11 C 1.53006 * 109.48172 * 181.13994 * 10 9 8 12 12 C 1.53000 * 109.48308 * 301.16206 * 10 9 8 13 13 C 1.53089 * 109.42602 * 61.15090 * 10 9 8 14 14 C 1.34957 * 111.12072 * 359.51111 * 4 3 2 15 15 O 1.21295 * 127.50195 * 180.29016 * 14 4 3 16 16 C 1.51442 * 126.41783 * 179.71268 * 2 1 3 17 17 H 1.08997 * 110.60506 * 298.47842 * 16 2 1 18 18 C 1.53001 * 110.73920 * 61.38216 * 16 2 1 19 19 C 1.50695 * 109.47018 * 180.66003 * 18 16 2 20 20 H 1.07995 * 120.00002 * 359.97438 * 19 18 16 21 21 C 1.37878 * 119.99969 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00215 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00116 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46840 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47246 * 119.99383 * 23 21 19 26 26 H 1.48491 * 109.47255 * 239.99859 * 23 21 19 27 27 H 1.09000 * 109.46845 * 270.28854 * 1 2 3 28 28 H 1.09003 * 109.46717 * 30.28745 * 1 2 3 29 29 H 1.08995 * 109.46982 * 150.28834 * 1 2 3 30 30 H 1.09001 * 109.52278 * 63.15735 * 7 5 4 31 31 H 1.08993 * 109.52012 * 302.96453 * 7 5 4 32 32 H 1.08999 * 109.48477 * 297.62373 * 8 7 5 33 33 H 1.09004 * 109.48139 * 177.58966 * 8 7 5 34 34 H 1.09001 * 109.46801 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.46998 * 300.01934 * 11 10 9 36 36 H 1.09000 * 109.47050 * 60.02225 * 11 10 9 37 37 H 1.09005 * 109.47013 * 299.97398 * 12 10 9 38 38 H 1.09002 * 109.47377 * 59.97650 * 12 10 9 39 39 H 1.08998 * 109.47672 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.52332 * 62.29811 * 13 10 9 41 41 H 1.09000 * 109.52420 * 182.49238 * 13 10 9 42 42 H 1.08999 * 109.47136 * 300.66047 * 18 16 2 43 43 H 1.09003 * 109.46949 * 60.65706 * 18 16 2 44 44 H 0.96999 * 120.00130 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7076 -0.0050 5 6 4.7021 1.6937 -0.0109 6 1 5.6633 1.1795 -0.0118 7 6 4.5959 2.5792 1.2346 8 6 5.6847 3.6540 1.1813 9 8 5.5420 4.4158 -0.0193 10 6 5.6793 3.6483 -1.2170 11 6 5.5369 4.5678 -2.4315 12 6 7.0562 2.9814 -1.2406 13 6 4.5905 2.5730 -1.2603 14 6 3.8036 -0.6292 0.0021 15 8 4.8580 -1.2289 0.0053 16 6 2.4061 -1.2186 0.0061 17 1 2.2424 -1.8116 0.9059 18 6 2.1763 -2.0678 -1.2457 19 6 3.0719 -3.2789 -1.2025 20 1 3.7387 -3.4279 -0.3662 21 6 3.0409 -4.1963 -2.2313 22 7 2.2293 -4.0147 -3.2501 23 14 4.1517 -5.6973 -2.1782 24 1 4.9626 -5.6692 -0.9345 25 1 3.3215 -6.9285 -2.1994 26 1 5.0533 -5.6879 -3.3580 27 1 -0.3633 0.0052 1.0277 28 1 -0.3633 0.8874 -0.5183 29 1 -0.3633 -0.8925 -0.5093 30 1 4.7299 1.9690 2.1278 31 1 3.6156 3.0548 1.2608 32 1 6.6656 3.1790 1.1959 33 1 5.5871 4.3134 2.0438 34 1 5.6412 3.9821 -3.3449 35 1 4.5559 5.0427 -2.4146 36 1 6.3119 5.3336 -2.4003 37 1 7.8313 3.7472 -1.2095 38 1 7.1576 2.3263 -0.3754 39 1 7.1606 2.3957 -2.1539 40 1 3.6099 3.0483 -1.2845 41 1 4.7206 1.9585 -2.1511 42 1 1.1348 -2.3872 -1.2819 43 1 2.4062 -1.4772 -2.1326 44 1 2.2072 -4.6603 -3.9737 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601958430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:10 Heat of formation + Delta-G solvation = -42.318633 kcal Electronic energy + Delta-G solvation = -24913.104458 eV Core-core repulsion = 21445.376034 eV Total energy + Delta-G solvation = -3467.728424 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96147 -39.76298 -36.77658 -34.93407 -33.70313 -33.17311 -31.48142 -30.36525 -28.57203 -27.55291 -27.30514 -25.90732 -23.96084 -22.58605 -21.75384 -20.21961 -19.34140 -18.63021 -16.86540 -16.40228 -16.13426 -15.64311 -15.44837 -14.87802 -14.56556 -14.44017 -14.20579 -14.11143 -13.49899 -13.20904 -13.16165 -12.91443 -12.55663 -12.32870 -12.23431 -12.14365 -12.04385 -11.80124 -11.62683 -11.54632 -11.43246 -11.25495 -11.15985 -10.92457 -10.73297 -10.53011 -10.23155 -10.18593 -9.70162 -9.52226 -9.31174 -8.75079 -8.37948 -8.10533 -6.04074 -4.05037 2.18478 2.79395 3.22885 3.32569 3.40049 3.48127 3.63607 4.35520 4.46291 4.62519 4.69290 4.69770 4.82139 4.91355 5.05143 5.14659 5.20426 5.30095 5.33255 5.45279 5.50341 5.54630 5.58206 5.65391 5.71595 5.74137 5.85025 5.87089 5.90347 5.94415 6.00195 6.10727 6.11384 6.15478 6.26392 6.42421 6.69562 6.89242 7.16530 7.40746 7.46131 7.95096 8.20428 8.28643 8.55073 9.01359 9.59617 11.07239 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017543 B = 0.004553 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.707208 B = 6148.219124 C = 6822.812880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.099 3.901 3 N -0.255 5.255 4 N -0.478 5.478 5 C 0.172 3.828 6 H 0.099 0.901 7 C -0.162 4.162 8 C 0.063 3.937 9 O -0.373 6.373 10 C 0.115 3.885 11 C -0.136 4.136 12 C -0.183 4.183 13 C -0.148 4.148 14 C 0.511 3.489 15 O -0.488 6.488 16 C -0.132 4.132 17 H 0.120 0.880 18 C 0.055 3.945 19 C -0.515 4.515 20 H 0.066 0.934 21 C 0.059 3.941 22 N -0.898 5.898 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.019 0.981 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 15.950 6.415 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 N -0.061 5.061 4 N -0.299 5.299 5 C 0.070 3.930 6 H 0.117 0.883 7 C -0.200 4.200 8 C -0.014 4.014 9 O -0.292 6.292 10 C 0.075 3.925 11 C -0.193 4.193 12 C -0.240 4.240 13 C -0.187 4.187 14 C 0.299 3.701 15 O -0.358 6.358 16 C -0.155 4.155 17 H 0.137 0.863 18 C 0.017 3.983 19 C -0.553 4.553 20 H 0.084 0.916 21 C -0.142 4.142 22 N -0.537 5.537 23 Si 0.722 3.278 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.211 1.211 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.518 16.790 6.253 18.093 hybrid contribution 0.755 -2.021 -0.074 2.158 sum 3.273 14.770 6.179 16.341 Atomic orbital electron populations 1.20305 0.85416 1.04369 1.03212 1.25432 0.97259 0.91853 0.94846 1.74426 0.89059 1.26932 1.15691 1.49857 1.02491 1.06053 1.71484 1.20976 0.88565 0.88502 0.94999 0.88309 1.22550 1.01534 0.97862 0.98080 1.22549 0.97257 0.93873 0.87762 1.87951 1.92878 1.35207 1.13171 1.21475 0.93707 0.91202 0.86082 1.21739 1.02894 0.99309 0.95345 1.22501 0.96964 1.01337 1.03241 1.22540 1.00565 0.97294 0.98294 1.21455 0.92046 0.81856 0.74780 1.90702 1.31229 1.65843 1.48043 1.22047 0.90735 0.96529 1.06230 0.86254 1.18891 0.98544 0.93124 0.87736 1.21247 1.21889 1.05611 1.06534 0.91590 1.24953 0.95613 0.98346 0.95270 1.69962 1.37848 1.36419 1.09517 0.86485 0.80636 0.82468 0.78211 1.19543 1.21013 1.21064 0.90019 0.90460 0.89045 0.90850 0.89752 0.92764 0.88585 0.90971 0.91691 0.91798 0.91666 0.91868 0.91089 0.89755 0.90512 0.94428 0.96278 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.49 36.01 0.38 -0.53 16 2 C 0.10 1.67 6.94 -78.72 -0.55 1.12 16 3 N -0.25 -4.43 11.76 35.53 0.42 -4.01 16 4 N -0.48 -8.89 3.25 -53.23 -0.17 -9.07 16 5 C 0.17 2.68 2.65 -67.75 -0.18 2.50 16 6 H 0.10 1.61 6.16 -51.92 -0.32 1.29 16 7 C -0.16 -2.09 5.63 -26.59 -0.15 -2.24 16 8 C 0.06 0.69 6.51 37.20 0.24 0.93 16 9 O -0.37 -4.67 10.24 -35.23 -0.36 -5.03 16 10 C 0.12 1.38 1.11 -90.57 -0.10 1.28 16 11 C -0.14 -1.39 8.85 37.16 0.33 -1.06 16 12 C -0.18 -2.03 7.93 37.16 0.29 -1.73 16 13 C -0.15 -2.11 4.43 -26.59 -0.12 -2.23 16 14 C 0.51 11.26 7.57 -10.42 -0.08 11.18 16 15 O -0.49 -12.30 16.37 5.54 0.09 -12.21 16 16 C -0.13 -2.72 3.00 -92.08 -0.28 -2.99 16 17 H 0.12 2.34 8.14 -51.93 -0.42 1.92 16 18 C 0.06 1.37 4.51 -27.88 -0.13 1.25 16 19 C -0.51 -14.57 8.36 -34.44 -0.29 -14.86 16 20 H 0.07 1.92 7.05 -52.49 -0.37 1.55 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 23 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 32 H 0.05 0.55 6.34 -51.93 -0.33 0.22 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.72 4.98 -51.93 -0.26 0.46 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.04 0.93 7.59 -51.93 -0.39 0.53 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -32.95 351.18 -6.85 -39.80 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.12 Total: -0.41 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.72 Total: -5.79 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.98 Total: -38.90 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.27 Total: -17.24 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.95 -6.85 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601958430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.514 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds