Wall clock time and date at job start Tue Mar 31 2020 06:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.27570 * 126.41504 * 2 1 4 4 N 1.39151 * 113.16372 * 180.22214 * 3 2 1 5 5 C 1.46493 * 124.43964 * 179.76949 * 4 3 2 6 6 H 1.09008 * 109.54339 * 179.87841 * 5 4 3 7 7 C 1.53185 * 109.54158 * 59.70594 * 5 4 3 8 8 C 1.53087 * 109.16118 * 183.06231 * 7 5 4 9 9 O 1.42900 * 109.41968 * 57.60918 * 8 7 5 10 10 C 1.42905 * 114.09428 * 298.84097 * 9 8 7 11 11 C 1.53006 * 109.48172 * 181.13994 * 10 9 8 12 12 C 1.53000 * 109.48308 * 301.16206 * 10 9 8 13 13 C 1.53089 * 109.42602 * 61.15090 * 10 9 8 14 14 C 1.34957 * 111.12072 * 359.51111 * 4 3 2 15 15 O 1.21295 * 127.50195 * 180.29016 * 14 4 3 16 16 C 1.51442 * 126.41783 * 179.71268 * 2 1 3 17 17 H 1.08997 * 110.60506 * 298.47842 * 16 2 1 18 18 C 1.53001 * 110.73920 * 61.38216 * 16 2 1 19 19 C 1.50695 * 109.47018 * 180.66003 * 18 16 2 20 20 H 1.07995 * 120.00002 * 359.97438 * 19 18 16 21 21 C 1.37878 * 119.99969 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00215 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00116 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46840 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47246 * 119.99383 * 23 21 19 26 26 H 1.48491 * 109.47255 * 239.99859 * 23 21 19 27 27 H 1.09000 * 109.46845 * 270.28854 * 1 2 3 28 28 H 1.09003 * 109.46717 * 30.28745 * 1 2 3 29 29 H 1.08995 * 109.46982 * 150.28834 * 1 2 3 30 30 H 1.09001 * 109.52278 * 63.15735 * 7 5 4 31 31 H 1.08993 * 109.52012 * 302.96453 * 7 5 4 32 32 H 1.08999 * 109.48477 * 297.62373 * 8 7 5 33 33 H 1.09004 * 109.48139 * 177.58966 * 8 7 5 34 34 H 1.09001 * 109.46801 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.46998 * 300.01934 * 11 10 9 36 36 H 1.09000 * 109.47050 * 60.02225 * 11 10 9 37 37 H 1.09005 * 109.47013 * 299.97398 * 12 10 9 38 38 H 1.09002 * 109.47377 * 59.97650 * 12 10 9 39 39 H 1.08998 * 109.47672 * 179.97438 * 12 10 9 40 40 H 1.09000 * 109.52332 * 62.29811 * 13 10 9 41 41 H 1.09000 * 109.52420 * 182.49238 * 13 10 9 42 42 H 1.08999 * 109.47136 * 300.66047 * 18 16 2 43 43 H 1.09003 * 109.46949 * 60.65706 * 18 16 2 44 44 H 0.96999 * 120.00130 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7076 -0.0050 5 6 4.7021 1.6937 -0.0109 6 1 5.6633 1.1795 -0.0118 7 6 4.5959 2.5792 1.2346 8 6 5.6847 3.6540 1.1813 9 8 5.5420 4.4158 -0.0193 10 6 5.6793 3.6483 -1.2170 11 6 5.5369 4.5678 -2.4315 12 6 7.0562 2.9814 -1.2406 13 6 4.5905 2.5730 -1.2603 14 6 3.8036 -0.6292 0.0021 15 8 4.8580 -1.2289 0.0053 16 6 2.4061 -1.2186 0.0061 17 1 2.2424 -1.8116 0.9059 18 6 2.1763 -2.0678 -1.2457 19 6 3.0719 -3.2789 -1.2025 20 1 3.7387 -3.4279 -0.3662 21 6 3.0409 -4.1963 -2.2313 22 7 2.2293 -4.0147 -3.2501 23 14 4.1517 -5.6973 -2.1782 24 1 4.9626 -5.6692 -0.9345 25 1 3.3215 -6.9285 -2.1994 26 1 5.0533 -5.6879 -3.3580 27 1 -0.3633 0.0052 1.0277 28 1 -0.3633 0.8874 -0.5183 29 1 -0.3633 -0.8925 -0.5093 30 1 4.7299 1.9690 2.1278 31 1 3.6156 3.0548 1.2608 32 1 6.6656 3.1790 1.1959 33 1 5.5871 4.3134 2.0438 34 1 5.6412 3.9821 -3.3449 35 1 4.5559 5.0427 -2.4146 36 1 6.3119 5.3336 -2.4003 37 1 7.8313 3.7472 -1.2095 38 1 7.1576 2.3263 -0.3754 39 1 7.1606 2.3957 -2.1539 40 1 3.6099 3.0483 -1.2845 41 1 4.7206 1.9585 -2.1511 42 1 1.1348 -2.3872 -1.2819 43 1 2.4062 -1.4772 -2.1326 44 1 2.2072 -4.6603 -3.9737 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601958430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:09 Heat of formation + Delta-G solvation = -63.313282 kcal Electronic energy + Delta-G solvation = -24914.014854 eV Core-core repulsion = 21445.376034 eV Total energy + Delta-G solvation = -3468.638820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.44227 -40.86509 -38.48460 -36.35021 -35.13848 -34.62661 -32.86939 -32.12707 -29.62316 -28.72450 -28.29104 -27.75078 -25.22312 -24.28012 -22.98017 -21.80287 -20.61664 -19.96037 -18.53805 -18.03123 -17.43171 -16.97128 -16.79969 -16.54021 -15.95682 -15.89582 -15.61401 -15.34667 -14.80798 -14.56637 -14.34788 -14.16623 -14.06218 -13.59597 -13.50186 -13.32942 -13.20803 -13.05772 -12.99965 -12.87894 -12.84642 -12.71214 -12.59410 -12.40393 -12.15695 -12.12462 -11.74405 -11.56309 -11.41261 -11.16792 -10.66129 -10.61674 -10.37260 -9.59289 -8.24799 -6.32181 0.68133 1.34179 1.35931 1.36562 1.49947 1.61734 2.38337 2.71968 2.94543 3.10261 3.26103 3.54689 3.61978 3.70945 3.87920 3.91530 4.02024 4.13315 4.16415 4.30546 4.33879 4.51750 4.54743 4.61342 4.69856 4.73529 4.75835 4.81314 4.88513 4.89528 4.92983 4.98045 5.00671 5.08502 5.21744 5.29220 5.31200 5.32259 5.37272 5.59097 5.73561 6.12963 6.22475 6.70147 6.78455 6.90598 7.35805 8.86566 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017543 B = 0.004553 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.707208 B = 6148.219124 C = 6822.812880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.115 3.885 3 N -0.257 5.257 4 N -0.474 5.474 5 C 0.161 3.839 6 H 0.087 0.913 7 C -0.151 4.151 8 C 0.064 3.936 9 O -0.379 6.379 10 C 0.117 3.883 11 C -0.134 4.134 12 C -0.182 4.182 13 C -0.141 4.141 14 C 0.496 3.504 15 O -0.533 6.533 16 C -0.136 4.136 17 H 0.130 0.870 18 C 0.068 3.932 19 C -0.531 4.531 20 H 0.052 0.948 21 C 0.011 3.989 22 N -0.926 5.926 23 Si 0.954 3.046 24 H -0.274 1.274 25 H -0.267 1.267 26 H -0.282 1.282 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.039 0.961 43 H -0.015 1.015 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 17.156 7.226 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.078 4.078 3 N -0.063 5.063 4 N -0.293 5.293 5 C 0.060 3.940 6 H 0.105 0.895 7 C -0.190 4.190 8 C -0.013 4.013 9 O -0.298 6.298 10 C 0.077 3.923 11 C -0.191 4.191 12 C -0.239 4.239 13 C -0.180 4.180 14 C 0.284 3.716 15 O -0.407 6.407 16 C -0.159 4.159 17 H 0.148 0.852 18 C 0.030 3.970 19 C -0.569 4.569 20 H 0.070 0.930 21 C -0.188 4.188 22 N -0.566 5.566 23 Si 0.779 3.221 24 H -0.199 1.199 25 H -0.192 1.192 26 H -0.208 1.208 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.003 0.997 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.154 18.040 7.069 19.495 hybrid contribution 0.821 -2.377 -0.323 2.536 sum 2.975 15.663 6.746 17.311 Atomic orbital electron populations 1.20549 0.81687 1.05225 1.05651 1.26024 0.99015 0.89404 0.93332 1.74510 0.88287 1.26676 1.16874 1.50007 1.03701 1.05467 1.70128 1.21277 0.87156 0.88359 0.97247 0.89544 1.22478 1.02188 0.97817 0.96490 1.22696 0.96762 0.93721 0.88144 1.87953 1.92856 1.35465 1.13537 1.21506 0.93071 0.90830 0.86850 1.21754 1.03387 0.99353 0.94643 1.22491 0.96967 1.01638 1.02815 1.22476 1.01276 0.97441 0.96759 1.21710 0.91952 0.83230 0.74659 1.90654 1.32595 1.67059 1.50426 1.21946 0.91509 0.97837 1.04634 0.85236 1.18596 0.97823 0.92247 0.88349 1.21504 1.22181 1.06995 1.06264 0.92992 1.25722 0.96945 1.01133 0.94978 1.70041 1.39001 1.37521 1.10055 0.85561 0.78971 0.79670 0.77865 1.19912 1.19202 1.20772 0.86623 0.88499 0.89153 0.90661 0.90213 0.91882 0.85940 0.90468 0.91792 0.90342 0.89888 0.92563 0.91387 0.90483 0.92341 0.94242 0.99673 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.49 71.24 0.75 -0.85 16 2 C 0.11 3.74 6.94 46.83 0.33 4.07 16 3 N -0.26 -8.79 11.76 -40.84 -0.48 -9.27 16 4 N -0.47 -17.90 3.25 -440.59 -1.43 -19.33 16 5 C 0.16 5.07 2.65 45.11 0.12 5.19 16 6 H 0.09 2.93 6.16 -2.38 -0.01 2.92 16 7 C -0.15 -3.76 5.63 30.69 0.17 -3.59 16 8 C 0.06 1.27 6.51 72.01 0.47 1.74 16 9 O -0.38 -8.75 10.24 -148.98 -1.53 -10.28 16 10 C 0.12 2.69 1.11 -10.76 -0.01 2.67 16 11 C -0.13 -2.56 8.85 71.98 0.64 -1.92 16 12 C -0.18 -3.86 7.93 71.98 0.57 -3.29 16 13 C -0.14 -4.03 4.43 30.68 0.14 -3.90 16 14 C 0.50 22.57 7.57 87.94 0.67 23.24 16 15 O -0.53 -28.10 16.37 -3.08 -0.05 -28.15 16 16 C -0.14 -5.66 3.00 -11.74 -0.04 -5.70 16 17 H 0.13 5.10 8.14 -2.39 -0.02 5.08 16 18 C 0.07 3.48 4.51 29.85 0.13 3.61 16 19 C -0.53 -30.83 8.36 25.60 0.21 -30.61 16 20 H 0.05 3.11 7.05 -2.91 -0.02 3.09 16 21 C 0.01 0.61 5.46 84.65 0.46 1.08 16 22 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 23 Si 0.95 46.10 29.54 68.60 2.03 48.13 16 24 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 27 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.09 2.06 7.58 -2.39 -0.02 2.04 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.07 8.13 -2.39 -0.02 2.05 16 32 H 0.06 1.17 6.34 -2.39 -0.02 1.15 16 33 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 1.26 4.98 -2.39 -0.01 1.25 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 2.30 8.13 -2.39 -0.02 2.28 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.98 7.59 -2.39 -0.02 1.96 16 43 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 44 H 0.26 14.88 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -72.54 351.18 4.41 -68.13 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.98 Total: 14.08 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 4.61 Total: -8.26 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.63 Total: -83.66 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.58 Total: -38.43 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -72.54 4.41 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601958430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.820 kcal (2) G-P(sol) polarization free energy of solvation -72.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds