Wall clock time and date at job start Tue Mar 31 2020 07:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34895 * 117.00014 * 2 1 4 4 O 1.21620 * 120.00181 * 359.97438 * 3 2 1 5 5 C 1.46493 * 120.00185 * 179.97438 * 3 2 1 6 6 C 1.37989 * 126.26470 * 179.97438 * 5 3 2 7 7 C 1.39800 * 106.96953 * 180.02562 * 6 5 3 8 8 C 1.35483 * 107.84295 * 0.02562 * 7 6 5 9 9 C 1.50697 * 125.51054 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.46943 * 95.02118 * 9 8 7 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47206 * 299.99787 * 12 11 10 14 14 C 1.53001 * 109.47323 * 60.00045 * 12 11 10 15 15 C 1.50698 * 109.47393 * 180.02562 * 12 11 10 16 16 H 1.08010 * 119.99765 * 359.97438 * 15 12 11 17 17 C 1.37872 * 120.00736 * 179.97438 * 15 12 11 18 18 N 1.31523 * 119.99548 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00627 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47202 * 90.00137 * 19 17 15 21 21 H 1.48501 * 109.47603 * 210.00337 * 19 17 15 22 22 H 1.48506 * 109.47086 * 329.99976 * 19 17 15 23 23 N 1.34958 * 108.98487 * 0.26096 * 8 7 6 24 24 C 1.46504 * 125.63763 * 179.74022 * 23 8 7 25 25 H 1.09006 * 109.46728 * 300.00043 * 1 2 3 26 26 H 1.08999 * 109.47060 * 60.00022 * 1 2 3 27 27 H 1.09006 * 109.46722 * 180.02562 * 1 2 3 28 28 H 1.07998 * 126.51652 * 0.04636 * 6 5 3 29 29 H 1.07999 * 126.08188 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.46763 * 335.02560 * 9 8 7 31 31 H 1.08995 * 109.47483 * 215.02217 * 9 8 7 32 32 H 1.00901 * 111.00067 * 303.95401 * 10 9 8 33 33 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 34 34 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 35 35 H 1.08999 * 109.47049 * 60.00315 * 13 12 11 36 36 H 1.09005 * 109.47151 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.47171 * 300.00432 * 13 12 11 38 38 H 1.08991 * 109.46963 * 60.00286 * 14 12 11 39 39 H 1.09005 * 109.47384 * 179.97438 * 14 12 11 40 40 H 1.08999 * 109.47105 * 299.99791 * 14 12 11 41 41 H 0.97002 * 119.99722 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.46989 * 89.99689 * 24 23 8 43 43 H 1.08998 * 109.47216 * 209.99888 * 24 23 8 44 44 H 1.08999 * 109.46765 * 330.00491 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5273 1.2786 0.0006 6 6 4.2842 2.4324 0.0001 7 6 5.6260 2.0402 0.0004 8 6 5.6627 0.6859 0.0003 9 6 6.9126 -0.1559 0.0000 10 7 7.2513 -0.5300 1.3796 11 6 8.4678 -1.3527 1.4183 12 6 8.7875 -1.7222 2.8681 13 6 9.0087 -0.4462 3.6828 14 6 7.6193 -2.5110 3.4630 15 6 10.0358 -2.5657 2.9081 16 1 10.5494 -2.8137 1.9909 17 6 10.5221 -3.0207 4.1152 18 7 9.8970 -2.7182 5.2321 19 14 12.0689 -4.0667 4.1646 20 1 13.2574 -3.1868 4.3002 21 1 12.0037 -4.9926 5.3238 22 1 12.1754 -4.8525 2.9090 23 7 4.3988 0.2125 -0.0057 24 6 4.0171 -1.2019 -0.0131 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.9109 3.4459 0.0000 29 1 6.4814 2.6995 0.0005 30 1 7.7342 0.4138 -0.4342 31 1 6.7437 -1.0569 -0.5897 32 1 7.3496 0.2879 1.9623 33 1 8.3100 -2.2620 0.8383 34 1 9.3000 -0.7910 0.9942 35 1 8.1062 0.1643 3.6541 36 1 9.2361 -0.7094 4.7159 37 1 9.8410 0.1158 3.2590 38 1 7.4618 -3.4200 2.8827 39 1 7.8473 -2.7747 4.4958 40 1 6.7167 -1.9006 3.4343 41 1 10.2394 -3.0380 6.0815 42 1 3.9193 -1.5572 1.0127 43 1 3.0649 -1.3186 -0.5304 44 1 4.7834 -1.7823 -0.5270 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602022140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:48 Heat of formation + Delta-G solvation = -39.020141 kcal Electronic energy + Delta-G solvation = -23841.985971 eV Core-core repulsion = 20374.400581 eV Total energy + Delta-G solvation = -3467.585390 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59935 -40.00133 -36.98923 -36.57604 -34.11895 -32.92642 -31.36269 -29.77243 -27.92340 -26.51987 -25.70576 -25.58935 -25.21143 -23.27434 -22.32810 -20.30729 -19.56256 -18.50135 -17.94853 -17.01531 -16.63440 -16.12768 -15.67353 -15.31618 -14.68936 -14.58244 -14.05632 -13.78090 -13.66090 -13.43071 -13.31610 -12.86145 -12.57335 -12.49663 -12.43878 -12.17200 -12.07208 -11.93854 -11.40820 -11.17444 -11.03251 -11.01661 -10.82852 -10.68837 -10.60686 -10.21679 -10.09752 -9.42946 -9.16924 -8.76678 -8.67277 -8.32794 -8.24079 -7.81472 -5.94153 -4.04949 1.15963 2.46786 2.57982 2.82432 3.10881 3.29118 3.36529 3.38936 4.40858 4.55704 4.73020 4.82501 4.86496 4.94151 4.96798 5.21638 5.22924 5.31470 5.34108 5.46036 5.58059 5.59351 5.73314 5.99489 6.05257 6.21711 6.24303 6.31834 6.66954 6.74145 6.85018 6.96031 7.03457 7.12634 7.13272 7.32374 7.40474 7.61840 7.63482 7.72613 7.78548 7.86298 8.17327 8.30516 8.51836 8.96494 9.60393 11.06324 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.003009 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.348243 B = 9302.254651 C = 9659.578822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.541 3.459 4 O -0.507 6.507 5 C -0.062 4.062 6 C -0.092 4.092 7 C -0.214 4.214 8 C 0.085 3.915 9 C 0.115 3.885 10 N -0.683 5.683 11 C 0.075 3.925 12 C 0.070 3.930 13 C -0.133 4.133 14 C -0.118 4.118 15 C -0.508 4.508 16 H 0.052 0.948 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.400 5.400 24 C 0.069 3.931 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.344 0.656 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.011 0.989 36 H 0.083 0.917 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.074 0.926 40 H 0.019 0.981 41 H 0.258 0.742 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.827 5.088 -11.108 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.279 6.279 3 C 0.387 3.613 4 O -0.396 6.396 5 C -0.171 4.171 6 C -0.119 4.119 7 C -0.238 4.238 8 C -0.036 4.036 9 C -0.015 4.015 10 N -0.316 5.316 11 C -0.053 4.053 12 C 0.070 3.930 13 C -0.191 4.191 14 C -0.176 4.176 15 C -0.547 4.547 16 H 0.070 0.930 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.074 5.074 24 C -0.072 4.072 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.163 0.837 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.030 0.970 36 H 0.102 0.898 37 H 0.039 0.961 38 H 0.036 0.964 39 H 0.093 0.907 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.636 4.402 -10.906 18.776 hybrid contribution 1.350 0.081 -0.090 1.356 sum -13.286 4.482 -10.996 17.819 Atomic orbital electron populations 1.23263 0.76070 1.03685 1.02630 1.86626 1.23641 1.32797 1.84859 1.19828 0.87031 0.81577 0.72832 1.90879 1.65578 1.35816 1.47331 1.19246 0.86303 0.88163 1.23435 1.21251 0.92278 0.96572 1.01757 1.20698 0.96918 0.93273 1.12892 1.20571 0.85385 0.93949 1.03676 1.20520 0.90726 0.96926 0.93310 1.60681 1.39404 1.24816 1.06698 1.22193 0.87100 0.94955 1.01046 1.18078 0.94117 0.92962 0.87892 1.21844 0.96182 0.96640 1.04442 1.21634 0.95836 0.97368 1.02780 1.21099 1.09284 1.31629 0.92663 0.92979 1.24885 0.96844 0.96081 0.95750 1.69838 1.39203 1.45631 0.97605 0.86656 0.83753 0.80380 0.77521 1.20845 1.21306 1.20073 1.43788 1.05116 1.06507 1.51961 1.22261 1.02450 0.77808 1.04701 0.91767 0.91892 0.88033 0.83379 0.83698 0.92972 0.90523 0.83650 0.92482 0.96508 0.97009 0.89811 0.96124 0.96368 0.90744 0.96222 0.93157 0.89702 0.88972 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.36 -4.07 8.00 -41.03 -0.33 -4.40 16 3 C 0.54 7.37 7.92 34.06 0.27 7.64 16 4 O -0.51 -7.86 16.68 -19.36 -0.32 -8.18 16 5 C -0.06 -0.86 6.89 -81.99 -0.56 -1.42 16 6 C -0.09 -1.22 10.66 -39.09 -0.42 -1.64 16 7 C -0.21 -2.74 10.71 -39.98 -0.43 -3.17 16 8 C 0.08 1.13 6.36 -82.20 -0.52 0.60 16 9 C 0.11 1.54 5.80 -4.98 -0.03 1.51 16 10 N -0.68 -11.29 5.70 -115.06 -0.66 -11.94 16 11 C 0.08 1.46 4.59 -3.82 -0.02 1.44 16 12 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 13 C -0.13 -3.07 7.92 37.16 0.29 -2.78 16 14 C -0.12 -2.79 8.09 37.16 0.30 -2.49 16 15 C -0.51 -13.29 8.01 -34.44 -0.28 -13.57 16 16 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.88 -24.11 9.35 55.43 0.52 -23.59 16 19 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.40 -5.23 3.15 -115.77 -0.36 -5.60 16 24 C 0.07 0.74 10.33 59.85 0.62 1.36 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.97 7.13 -51.93 -0.37 0.60 16 32 H 0.34 5.86 6.76 -39.29 -0.27 5.60 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 36 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 1.95 6.07 -51.93 -0.32 1.63 16 40 H 0.02 0.42 7.60 -51.93 -0.39 0.03 16 41 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 0.87 6.17 -51.93 -0.32 0.55 16 44 H 0.09 0.85 7.03 -51.93 -0.37 0.49 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -29.31 356.15 -7.57 -36.88 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.88 Total: 3.70 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 0.12 Total: -7.95 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.50 Total: -41.13 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.65 Total: -12.58 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.31 -7.57 -36.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602022140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.140 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds