Wall clock time and date at job start Tue Mar 31 2020 07:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46979 * 2 1 4 4 C 1.50699 * 109.46987 * 240.00626 * 2 1 3 5 5 H 1.08009 * 119.99551 * 241.34279 * 4 2 1 6 6 C 1.37871 * 120.00631 * 61.34245 * 4 2 1 7 7 N 1.31514 * 120.00604 * 193.97613 * 6 4 2 8 8 Si 1.86807 * 119.99758 * 13.98036 * 6 4 2 9 9 H 1.48501 * 109.47328 * 84.54753 * 8 6 4 10 10 H 1.48500 * 109.46934 * 204.54924 * 8 6 4 11 11 H 1.48495 * 109.46858 * 324.54525 * 8 6 4 12 12 C 1.52997 * 109.47487 * 119.99995 * 2 1 3 13 13 N 1.46504 * 109.47089 * 300.00494 * 12 2 1 14 14 C 1.34773 * 119.99629 * 179.97438 * 13 12 2 15 15 O 1.21346 * 120.00601 * 359.97438 * 14 13 12 16 16 C 1.49456 * 119.99789 * 179.97438 * 14 13 12 17 17 O 1.21348 * 119.99734 * 359.72732 * 16 14 13 18 18 N 1.34774 * 119.99915 * 179.97438 * 16 14 13 19 19 C 1.46501 * 119.99659 * 179.72498 * 18 16 14 20 20 C 1.53006 * 109.47023 * 180.02562 * 19 18 16 21 21 C 1.54636 * 111.03217 * 287.02181 * 20 19 18 22 22 C 1.51098 * 104.72518 * 217.33201 * 21 20 19 23 23 C 1.30533 * 111.10228 * 16.44130 * 22 21 20 24 24 C 1.51098 * 111.10560 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.46987 * 309.36340 * 1 2 3 26 26 H 1.08996 * 109.47107 * 69.36378 * 1 2 3 27 27 H 1.08994 * 109.47004 * 189.36710 * 1 2 3 28 28 H 1.09001 * 109.47215 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47257 * 300.00039 * 3 2 1 30 30 H 1.08998 * 109.47114 * 60.00230 * 3 2 1 31 31 H 0.96997 * 120.00503 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47448 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.46642 * 59.99743 * 12 2 1 34 34 H 0.97002 * 120.00086 * 359.97438 * 13 12 2 35 35 H 0.96994 * 120.00587 * 359.73246 * 18 16 14 36 36 H 1.09003 * 109.47724 * 300.00116 * 19 18 16 37 37 H 1.08997 * 109.47115 * 60.00404 * 19 18 16 38 38 H 1.08990 * 110.91484 * 51.03193 * 20 19 18 39 39 H 1.08994 * 110.39442 * 336.14737 * 21 20 19 40 40 H 1.09001 * 110.38373 * 98.52809 * 21 20 19 41 41 H 1.08001 * 124.45196 * 196.45964 * 22 21 20 42 42 H 1.08001 * 124.44399 * 180.02562 * 23 22 21 43 43 H 1.09000 * 110.38781 * 224.75404 * 24 23 22 44 44 H 1.09001 * 110.38617 * 102.37196 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6352 -1.6009 -1.1316 6 6 1.7223 -0.2233 -2.4826 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5008 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5159 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6694 15 8 2.5739 -1.4786 3.7808 16 6 1.3792 0.2133 4.8898 17 8 0.6863 1.2033 4.7785 18 7 1.7040 -0.2478 6.1138 19 6 1.2210 0.4466 7.3100 20 6 1.7294 -0.2759 8.5593 21 6 0.9803 -1.6120 8.7711 22 6 0.8160 -1.7269 10.2687 23 6 1.0150 -0.5767 10.8530 24 6 1.3458 0.4968 9.8424 25 1 -0.3633 0.6518 0.7946 26 1 -0.3633 0.3622 -0.9617 27 1 -0.3633 -1.0139 0.1673 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6972 -0.6299 -4.4269 32 1 3.1300 -0.7208 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.9942 0.7582 2.3565 35 1 2.2576 -1.0393 6.2028 36 1 1.5899 1.4723 7.3086 37 1 0.1311 0.4524 7.3115 38 1 2.8064 -0.4346 8.5057 39 1 0.0061 -1.5827 8.2833 40 1 1.5723 -2.4438 8.3893 41 1 0.5668 -2.6407 10.7877 42 1 0.9522 -0.4140 11.9188 43 1 2.1858 1.0987 10.1891 44 1 0.4756 1.1272 9.6595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602279370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:41 Heat of formation + Delta-G solvation = -46.525916 kcal Electronic energy + Delta-G solvation = -23427.233972 eV Core-core repulsion = 19959.323107 eV Total energy + Delta-G solvation = -3467.910865 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57566 -39.32492 -38.31090 -36.82378 -35.06082 -33.32968 -31.51099 -30.61896 -28.58409 -27.03408 -26.38835 -25.59334 -24.91420 -22.90456 -20.90777 -20.10898 -19.39648 -19.11688 -18.22351 -16.86982 -16.45052 -16.13061 -16.01373 -15.76659 -15.26013 -14.88394 -14.61164 -14.26748 -13.61584 -13.45012 -13.13759 -13.00037 -12.86130 -12.64082 -12.53825 -12.24672 -12.09020 -12.04097 -11.64203 -11.57062 -11.51644 -11.37564 -11.30098 -10.49257 -10.34184 -10.18796 -10.08416 -9.47546 -9.40164 -9.28909 -9.13571 -8.74031 -8.70334 -8.47956 -6.16713 -4.14559 1.56198 1.86653 2.47827 3.24700 3.32522 3.37742 3.39033 3.79305 4.13596 4.19296 4.34711 4.39486 4.68920 4.84509 4.86256 5.06530 5.14086 5.27546 5.33526 5.34743 5.42759 5.56130 5.59298 5.68772 5.83150 5.98131 6.03461 6.06841 6.13861 6.34082 6.40019 6.47346 6.47978 6.56850 6.59983 6.67396 6.89012 7.01796 7.16947 7.38758 7.56665 7.69099 7.86484 8.23067 8.42275 8.87516 9.47039 10.96064 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043501 B = 0.002657 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.510535 B =10535.761370 C =10853.951426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.028 3.972 3 C -0.151 4.151 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.138 3.862 13 N -0.687 5.687 14 C 0.498 3.502 15 O -0.530 6.530 16 C 0.507 3.493 17 O -0.522 6.522 18 N -0.704 5.704 19 C 0.127 3.873 20 C -0.108 4.108 21 C -0.101 4.101 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.092 4.092 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.409 0.591 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.074 0.926 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 2.546 25.856 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 C -0.207 4.207 4 C -0.552 4.552 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.174 1.174 12 C 0.017 3.983 13 N -0.339 5.339 14 C 0.277 3.723 15 O -0.408 6.408 16 C 0.288 3.712 17 O -0.398 6.398 18 N -0.358 5.358 19 C 0.004 3.996 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.182 4.182 23 C -0.188 4.188 24 C -0.130 4.130 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.246 0.754 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.093 0.907 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.110 2.534 25.608 25.819 hybrid contribution -0.323 0.911 -0.198 0.986 sum -2.433 3.444 25.410 25.757 Atomic orbital electron populations 1.22322 0.97678 0.99989 1.00264 1.18743 0.92701 0.92366 0.93505 1.22385 1.01247 0.98233 0.98882 1.20672 1.34253 1.12363 0.87879 0.90449 1.24960 0.94608 0.97316 0.95772 1.69942 1.48029 1.35918 0.98744 0.87308 0.79435 0.85500 0.76094 1.21290 1.23356 1.17410 1.21731 0.99007 0.96054 0.81554 1.46200 1.50843 1.31500 1.05312 1.19953 0.82302 0.85190 0.84857 1.90742 1.37617 1.25720 1.86725 1.20446 0.81003 0.84724 0.85002 1.90753 1.36819 1.25299 1.86884 1.45739 1.53306 1.31998 1.04789 1.21478 0.99676 0.96211 0.82221 1.22310 1.00958 0.95640 0.93753 1.21525 1.00876 0.97189 0.94257 1.23304 1.00719 0.98313 0.95872 1.23256 1.01330 0.95094 0.99101 1.21327 1.01763 0.97355 0.92538 0.95689 0.92344 0.93309 0.92677 0.93881 0.94945 0.92505 0.91256 0.91148 0.75393 0.75068 0.90737 0.90758 0.89174 0.90165 0.90708 0.85850 0.85810 0.90700 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 7.53 37.16 0.28 -2.71 16 2 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -3.09 7.52 37.16 0.28 -2.81 16 4 C -0.51 -13.62 8.62 -34.44 -0.30 -13.91 16 5 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 6 C 0.08 2.11 5.32 -17.82 -0.09 2.01 16 7 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 8 Si 0.88 21.12 22.79 -169.99 -3.87 17.24 16 9 H -0.29 -6.79 7.10 56.52 0.40 -6.39 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.25 -5.44 4.65 56.52 0.26 -5.18 16 12 C 0.14 2.71 4.49 -4.04 -0.02 2.69 16 13 N -0.69 -11.70 5.00 -60.73 -0.30 -12.00 16 14 C 0.50 8.11 7.89 -11.58 -0.09 8.02 16 15 O -0.53 -9.58 16.48 5.50 0.09 -9.49 16 16 C 0.51 7.19 7.89 -11.58 -0.09 7.10 16 17 O -0.52 -8.41 16.48 5.50 0.09 -8.32 16 18 N -0.70 -7.51 5.50 -60.73 -0.33 -7.85 16 19 C 0.13 1.08 4.99 -4.04 -0.02 1.06 16 20 C -0.11 -0.71 3.16 -88.90 -0.28 -0.99 16 21 C -0.10 -0.69 6.33 -26.83 -0.17 -0.86 16 22 C -0.16 -1.07 10.78 -35.70 -0.38 -1.46 16 23 C -0.17 -1.05 10.78 -35.70 -0.38 -1.44 16 24 C -0.09 -0.55 6.38 -26.84 -0.17 -0.72 16 25 H 0.02 0.44 7.13 -51.93 -0.37 0.07 16 26 H 0.06 1.28 4.30 -51.93 -0.22 1.05 16 27 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.93 2.25 -51.93 -0.12 0.82 16 30 H 0.03 0.57 6.86 -51.93 -0.36 0.21 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.41 6.69 5.73 -40.82 -0.23 6.46 16 35 H 0.41 3.99 7.94 -40.82 -0.32 3.66 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.66 7.92 -51.93 -0.41 0.25 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.59 7.74 -51.93 -0.40 0.19 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.46 7.89 -51.93 -0.41 0.05 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -30.56 346.52 -6.63 -37.19 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.77 Total: 7.12 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.52 Total: -3.50 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.14 Total: -45.47 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.18 Total: -17.81 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -3.87 Total: 17.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.56 -6.63 -37.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602279370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.340 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds