Wall clock time and date at job start Tue Mar 31 2020 07:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46979 * 2 1 4 4 C 1.50699 * 109.46987 * 240.00626 * 2 1 3 5 5 H 1.08009 * 119.99551 * 241.34279 * 4 2 1 6 6 C 1.37871 * 120.00631 * 61.34245 * 4 2 1 7 7 N 1.31514 * 120.00604 * 193.97613 * 6 4 2 8 8 Si 1.86807 * 119.99758 * 13.98036 * 6 4 2 9 9 H 1.48501 * 109.47328 * 84.54753 * 8 6 4 10 10 H 1.48500 * 109.46934 * 204.54924 * 8 6 4 11 11 H 1.48495 * 109.46858 * 324.54525 * 8 6 4 12 12 C 1.52997 * 109.47487 * 119.99995 * 2 1 3 13 13 N 1.46504 * 109.47089 * 300.00494 * 12 2 1 14 14 C 1.34773 * 119.99629 * 179.97438 * 13 12 2 15 15 O 1.21346 * 120.00601 * 359.97438 * 14 13 12 16 16 C 1.49456 * 119.99789 * 179.97438 * 14 13 12 17 17 O 1.21348 * 119.99734 * 359.72732 * 16 14 13 18 18 N 1.34774 * 119.99915 * 179.97438 * 16 14 13 19 19 C 1.46501 * 119.99659 * 179.72498 * 18 16 14 20 20 C 1.53006 * 109.47023 * 180.02562 * 19 18 16 21 21 C 1.54636 * 111.03217 * 287.02181 * 20 19 18 22 22 C 1.51098 * 104.72518 * 217.33201 * 21 20 19 23 23 C 1.30533 * 111.10228 * 16.44130 * 22 21 20 24 24 C 1.51098 * 111.10560 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.46987 * 309.36340 * 1 2 3 26 26 H 1.08996 * 109.47107 * 69.36378 * 1 2 3 27 27 H 1.08994 * 109.47004 * 189.36710 * 1 2 3 28 28 H 1.09001 * 109.47215 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47257 * 300.00039 * 3 2 1 30 30 H 1.08998 * 109.47114 * 60.00230 * 3 2 1 31 31 H 0.96997 * 120.00503 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47448 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.46642 * 59.99743 * 12 2 1 34 34 H 0.97002 * 120.00086 * 359.97438 * 13 12 2 35 35 H 0.96994 * 120.00587 * 359.73246 * 18 16 14 36 36 H 1.09003 * 109.47724 * 300.00116 * 19 18 16 37 37 H 1.08997 * 109.47115 * 60.00404 * 19 18 16 38 38 H 1.08990 * 110.91484 * 51.03193 * 20 19 18 39 39 H 1.08994 * 110.39442 * 336.14737 * 21 20 19 40 40 H 1.09001 * 110.38373 * 98.52809 * 21 20 19 41 41 H 1.08001 * 124.45196 * 196.45964 * 22 21 20 42 42 H 1.08001 * 124.44399 * 180.02562 * 23 22 21 43 43 H 1.09000 * 110.38781 * 224.75404 * 24 23 22 44 44 H 1.09001 * 110.38617 * 102.37196 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6352 -1.6009 -1.1316 6 6 1.7223 -0.2233 -2.4826 7 7 1.9157 -0.9724 -3.5461 8 14 1.0275 1.5008 -2.6684 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5866 -3.9287 11 1 0.1417 1.8043 -1.5159 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6694 15 8 2.5739 -1.4786 3.7808 16 6 1.3792 0.2133 4.8898 17 8 0.6863 1.2033 4.7785 18 7 1.7040 -0.2478 6.1138 19 6 1.2210 0.4466 7.3100 20 6 1.7294 -0.2759 8.5593 21 6 0.9803 -1.6120 8.7711 22 6 0.8160 -1.7269 10.2687 23 6 1.0150 -0.5767 10.8530 24 6 1.3458 0.4968 9.8424 25 1 -0.3633 0.6518 0.7946 26 1 -0.3633 0.3622 -0.9617 27 1 -0.3633 -1.0139 0.1673 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6972 -0.6299 -4.4269 32 1 3.1300 -0.7208 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.9942 0.7582 2.3565 35 1 2.2576 -1.0393 6.2028 36 1 1.5899 1.4723 7.3086 37 1 0.1311 0.4524 7.3115 38 1 2.8064 -0.4346 8.5057 39 1 0.0061 -1.5827 8.2833 40 1 1.5723 -2.4438 8.3893 41 1 0.5668 -2.6407 10.7877 42 1 0.9522 -0.4140 11.9188 43 1 2.1858 1.0987 10.1891 44 1 0.4756 1.1272 9.6595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602279370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:41 Heat of formation + Delta-G solvation = -68.398570 kcal Electronic energy + Delta-G solvation = -23428.182442 eV Core-core repulsion = 19959.323107 eV Total energy + Delta-G solvation = -3468.859335 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.75329 -40.15707 -39.36434 -38.43539 -36.03839 -34.93151 -33.43159 -31.31332 -29.06797 -28.40305 -28.02146 -27.11574 -26.35706 -24.07252 -21.70569 -21.18590 -20.96756 -19.67255 -19.46202 -18.14464 -17.86922 -17.32803 -17.08822 -16.86753 -16.60651 -16.29972 -15.79778 -15.43391 -14.93490 -14.79396 -14.60310 -14.35607 -14.04398 -13.96489 -13.77379 -13.61842 -12.99670 -12.98660 -12.86478 -12.57305 -12.39628 -12.21085 -12.20086 -12.03052 -11.97613 -11.87362 -11.78533 -11.09972 -10.71776 -10.62000 -10.40805 -10.32481 -10.17659 -9.75871 -8.30103 -6.31396 0.34990 1.33463 1.37131 1.38867 1.41098 1.50426 2.14965 2.34580 2.67676 3.05893 3.43888 3.59138 3.66600 3.86033 4.01713 4.29379 4.31275 4.38431 4.39261 4.50806 4.66051 4.70059 4.79571 4.82088 4.83623 4.86226 4.89546 4.90572 5.02030 5.04326 5.08197 5.12599 5.14843 5.29557 5.35435 5.47110 5.67502 5.68055 5.75327 5.93907 6.02111 6.28175 6.38536 6.70462 6.76208 6.95758 7.33535 8.86452 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043501 B = 0.002657 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.510535 B =10535.761370 C =10853.951426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.026 3.974 3 C -0.150 4.150 4 C -0.514 4.514 5 H 0.035 0.965 6 C 0.020 3.980 7 N -0.943 5.943 8 Si 0.940 3.060 9 H -0.282 1.282 10 H -0.315 1.315 11 H -0.210 1.210 12 C 0.153 3.847 13 N -0.683 5.683 14 C 0.499 3.501 15 O -0.550 6.550 16 C 0.514 3.486 17 O -0.541 6.541 18 N -0.687 5.687 19 C 0.128 3.872 20 C -0.101 4.101 21 C -0.104 4.104 22 C -0.177 4.177 23 C -0.171 4.171 24 C -0.093 4.093 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.265 0.735 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.416 0.584 35 H 0.419 0.581 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.085 0.915 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 4.473 28.594 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 C -0.207 4.207 4 C -0.552 4.552 5 H 0.054 0.946 6 C -0.178 4.178 7 N -0.582 5.582 8 Si 0.770 3.230 9 H -0.209 1.209 10 H -0.245 1.245 11 H -0.134 1.134 12 C 0.030 3.970 13 N -0.335 5.335 14 C 0.280 3.720 15 O -0.429 6.429 16 C 0.294 3.706 17 O -0.418 6.418 18 N -0.340 5.340 19 C 0.005 3.995 20 C -0.120 4.120 21 C -0.141 4.141 22 C -0.195 4.195 23 C -0.189 4.189 24 C -0.130 4.130 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.254 0.746 35 H 0.256 0.744 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.103 0.897 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.949 4.459 28.419 28.917 hybrid contribution 0.008 0.177 -0.948 0.965 sum -2.941 4.635 27.470 28.014 Atomic orbital electron populations 1.22253 0.96285 1.00783 1.00830 1.18685 0.93704 0.93093 0.92058 1.22326 1.01296 0.96966 1.00107 1.20958 1.32913 1.11177 0.90125 0.94622 1.25787 0.95403 1.01268 0.95366 1.70091 1.50589 1.38128 0.99379 0.86395 0.79419 0.80401 0.76800 1.20900 1.24471 1.13350 1.21306 0.98274 0.95389 0.82073 1.45979 1.51127 1.31601 1.04830 1.20354 0.81565 0.84810 0.85296 1.90737 1.38393 1.26643 1.87081 1.19940 0.81146 0.84432 0.85074 1.90752 1.37982 1.26063 1.87028 1.45754 1.52119 1.31752 1.04371 1.21638 0.99657 0.96415 0.81764 1.22260 1.01149 0.95447 0.93148 1.21540 1.00573 0.97339 0.94668 1.23427 1.01428 0.98971 0.95706 1.23459 1.00634 0.94931 0.99849 1.21359 1.02325 0.97379 0.91964 0.92265 0.93470 0.93560 0.92909 0.94635 0.91449 0.92651 0.92289 0.92495 0.74605 0.74359 0.90335 0.90845 0.88594 0.90829 0.90673 0.85138 0.84569 0.89678 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 7.53 71.98 0.54 -5.05 16 2 C 0.03 1.09 0.50 -52.93 -0.03 1.06 16 3 C -0.15 -5.74 7.52 71.98 0.54 -5.20 16 4 C -0.51 -27.77 8.62 25.60 0.22 -27.55 16 5 H 0.04 2.16 7.99 -2.91 -0.02 2.14 16 6 C 0.02 1.10 5.32 84.65 0.45 1.55 16 7 N -0.94 -57.87 13.96 21.44 0.30 -57.57 16 8 Si 0.94 42.97 22.79 68.60 1.56 44.53 16 9 H -0.28 -12.64 7.10 99.48 0.71 -11.93 16 10 H -0.32 -14.86 7.11 99.48 0.71 -14.16 16 11 H -0.21 -8.27 4.65 99.48 0.46 -7.81 16 12 C 0.15 5.88 4.49 86.38 0.39 6.26 16 13 N -0.68 -21.87 5.00 -464.42 -2.32 -24.19 16 14 C 0.50 15.42 7.89 87.27 0.69 16.11 16 15 O -0.55 -19.27 16.48 -3.23 -0.05 -19.32 16 16 C 0.51 13.43 7.89 87.27 0.69 14.12 16 17 O -0.54 -16.02 16.48 -3.24 -0.05 -16.08 16 18 N -0.69 -13.17 5.50 -464.40 -2.55 -15.72 16 19 C 0.13 1.87 4.99 86.38 0.43 2.30 16 20 C -0.10 -1.11 3.16 -9.68 -0.03 -1.14 16 21 C -0.10 -1.25 6.33 30.53 0.19 -1.06 16 22 C -0.18 -2.01 10.78 26.25 0.28 -1.72 16 23 C -0.17 -1.74 10.78 26.25 0.28 -1.45 16 24 C -0.09 -0.88 6.38 30.53 0.19 -0.68 16 25 H 0.06 1.89 7.13 -2.39 -0.02 1.87 16 26 H 0.05 1.93 4.30 -2.39 -0.01 1.92 16 27 H 0.05 1.79 8.12 -2.39 -0.02 1.77 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.42 2.25 -2.39 -0.01 1.41 16 30 H 0.07 2.10 6.86 -2.39 -0.02 2.09 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.42 12.24 5.73 -92.71 -0.53 11.71 16 35 H 0.42 7.24 7.94 -92.71 -0.74 6.50 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.15 7.92 -2.39 -0.02 1.13 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 0.97 7.74 -2.39 -0.02 0.96 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.76 7.89 -2.39 -0.02 0.74 16 Total: -1.00 -66.66 346.52 1.24 -65.42 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.49 Total: 25.36 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 4.85 Total: -2.44 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -4.57 Total: -97.48 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.11 Total: -35.40 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.56 Total: 44.53 kcal Total: -66.66 1.24 -65.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602279370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.974 kcal (2) G-P(sol) polarization free energy of solvation -66.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds