Wall clock time and date at job start Tue Mar 31 2020 06:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.46995 * 2 1 4 4 N 1.30007 * 127.33665 * 269.68462 * 3 2 1 5 5 O 1.20664 * 112.30357 * 179.79163 * 4 3 2 6 6 C 1.33487 * 113.15281 * 0.50047 * 5 4 3 7 7 C 1.37366 * 106.34505 * 359.70374 * 6 5 4 8 8 C 1.47399 * 128.56595 * 180.02562 * 7 6 5 9 9 O 1.21609 * 119.99516 * 170.72195 * 8 7 6 10 10 N 1.34772 * 120.00001 * 350.72242 * 8 7 6 11 11 C 1.46503 * 120.00241 * 0.93828 * 10 8 7 12 12 C 1.50701 * 109.46658 * 83.32574 * 11 10 8 13 13 H 1.07993 * 120.00544 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99427 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99471 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00166 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47370 * 90.00539 * 16 14 12 18 18 H 1.48506 * 109.46810 * 210.00120 * 16 14 12 19 19 H 1.48500 * 109.47184 * 329.99828 * 16 14 12 20 20 C 1.46500 * 120.00026 * 180.94094 * 10 8 7 21 21 C 1.52998 * 109.47307 * 184.10017 * 20 10 8 22 22 C 1.52996 * 109.47090 * 304.10388 * 20 10 8 23 23 C 1.53004 * 109.47113 * 64.10125 * 20 10 8 24 24 C 1.53007 * 109.46864 * 62.76342 * 23 20 10 25 25 H 1.08996 * 109.47304 * 59.99983 * 1 2 3 26 26 H 1.08997 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47094 * 299.99902 * 1 2 3 28 28 H 1.08993 * 109.47179 * 240.00597 * 2 1 3 29 29 H 1.08996 * 109.47304 * 120.00017 * 2 1 3 30 30 H 1.08000 * 126.82989 * 179.66329 * 6 5 4 31 31 H 1.09004 * 109.47168 * 203.32673 * 11 10 8 32 32 H 1.09002 * 109.47177 * 323.32513 * 11 10 8 33 33 H 0.96999 * 119.99814 * 179.97438 * 15 14 12 34 34 H 1.09007 * 109.46822 * 60.00210 * 21 20 10 35 35 H 1.08999 * 109.46999 * 179.97438 * 21 20 10 36 36 H 1.08996 * 109.47507 * 300.00127 * 21 20 10 37 37 H 1.09002 * 109.47259 * 65.42200 * 22 20 10 38 38 H 1.08997 * 109.47089 * 185.41789 * 22 20 10 39 39 H 1.09000 * 109.47188 * 305.42174 * 22 20 10 40 40 H 1.09001 * 109.47290 * 182.75528 * 23 20 10 41 41 H 1.08993 * 109.47298 * 302.76325 * 23 20 10 42 42 H 1.09000 * 109.46926 * 299.99343 * 24 23 20 43 43 H 1.08993 * 109.47176 * 59.99909 * 24 23 20 44 44 H 1.08998 * 109.46855 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3005 2.1624 -1.0337 5 8 2.6835 3.2630 -0.7207 6 6 2.7463 3.4408 0.6008 7 6 2.3296 2.2620 1.1697 8 6 2.2094 1.9236 2.5993 9 8 1.6641 0.8900 2.9356 10 7 2.7040 2.7597 3.5335 11 6 3.3426 4.0146 3.1292 12 6 2.2865 5.0657 2.9035 13 1 1.2440 4.8234 3.0474 14 6 2.6514 6.3369 2.5135 15 7 1.7298 7.2543 2.3170 16 14 4.4547 6.7563 2.2654 17 1 4.8374 6.4828 0.8569 18 1 4.6748 8.1934 2.5680 19 1 5.2856 5.9262 3.1742 20 6 2.6029 2.4136 4.9535 21 6 3.1435 3.5680 5.7996 22 6 1.1377 2.1599 5.3135 23 6 3.4220 1.1512 5.2303 24 6 4.8980 1.4263 4.9355 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.0626 4.3337 1.1196 31 1 4.0228 4.3455 3.9141 32 1 3.9015 3.8571 2.2067 33 1 1.9865 8.1486 2.0430 34 1 2.5599 4.4673 5.6024 35 1 3.0678 3.3106 6.8560 36 1 4.1873 3.7487 5.5431 37 1 0.7805 1.2777 4.7822 38 1 1.0504 1.9971 6.3877 39 1 0.5383 3.0240 5.0270 40 1 3.3075 0.8658 6.2760 41 1 3.0687 0.3416 4.5918 42 1 5.0126 1.7116 3.8898 43 1 5.2513 2.2359 5.5740 44 1 5.4814 0.5268 5.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602305878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:13 Heat of formation + Delta-G solvation = 31.818390 kcal Electronic energy + Delta-G solvation = -25965.611357 eV Core-core repulsion = 22501.097756 eV Total energy + Delta-G solvation = -3464.513601 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.25178 -39.84363 -36.52475 -34.72052 -34.42826 -32.41190 -31.10511 -30.72649 -29.87123 -28.49352 -26.67544 -24.58964 -23.68833 -23.22961 -22.23908 -20.73603 -20.06296 -18.18051 -17.33203 -16.96018 -16.68468 -16.13425 -15.45364 -14.90808 -14.58562 -14.17934 -14.16660 -13.82099 -13.57153 -13.18190 -12.95536 -12.77030 -12.64659 -12.37501 -11.95490 -11.84747 -11.65667 -11.40694 -11.32473 -11.27640 -11.20128 -11.08274 -10.71730 -10.67265 -10.53414 -10.35489 -10.34234 -10.22541 -9.78494 -9.44541 -9.10655 -9.03137 -8.82887 -7.81758 -6.44247 -4.47756 1.83466 2.32132 3.00636 3.09722 3.13253 3.46102 3.88030 3.96625 4.03795 4.53476 4.83907 4.86654 5.08118 5.28321 5.39236 5.47314 5.52434 5.57394 5.61520 5.69796 5.73137 5.87450 5.91391 6.04362 6.05521 6.08132 6.16088 6.19023 6.25905 6.29754 6.38058 6.44483 6.46022 6.47339 6.53371 6.53547 6.59812 6.83127 6.84987 7.17253 7.34747 7.99674 8.24330 8.66126 8.77244 8.89275 9.10322 10.66873 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.008854 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.318892 B = 3161.812185 C = 4718.726153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.038 4.038 3 C 0.062 3.938 4 N -0.376 5.376 5 O 0.075 5.925 6 C 0.009 3.991 7 C -0.262 4.262 8 C 0.603 3.397 9 O -0.555 6.555 10 N -0.573 5.573 11 C 0.183 3.817 12 C -0.548 4.548 13 H 0.085 0.915 14 C 0.079 3.921 15 N -0.872 5.872 16 Si 0.850 3.150 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.258 1.258 20 C 0.183 3.817 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.133 4.133 24 C -0.150 4.150 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.261 0.739 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.271 0.729 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.128 -8.806 2.435 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.102 4.102 4 N -0.087 5.087 5 O 0.019 5.981 6 C -0.071 4.071 7 C -0.269 4.269 8 C 0.392 3.608 9 O -0.437 6.437 10 N -0.304 5.304 11 C 0.061 3.939 12 C -0.586 4.586 13 H 0.103 0.897 14 C -0.128 4.128 15 N -0.508 5.508 16 Si 0.674 3.326 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.183 1.183 20 C 0.099 3.901 21 C -0.213 4.213 22 C -0.219 4.219 23 C -0.171 4.171 24 C -0.207 4.207 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.276 0.724 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.784 -9.242 1.262 10.066 hybrid contribution 0.840 0.732 0.705 1.318 sum 4.624 -8.510 1.967 9.883 Atomic orbital electron populations 1.21637 0.94038 1.01721 1.02407 1.19882 0.96497 0.87867 1.03356 1.24745 0.99743 0.98557 0.87123 1.73539 1.17781 0.93116 1.24231 1.84547 1.62705 1.26098 1.24744 1.28883 0.94751 1.01501 0.81982 1.22205 1.13899 0.95305 0.95519 1.16704 0.78013 0.82917 0.83149 1.90614 1.45172 1.26086 1.81798 1.47765 1.57123 1.20615 1.04856 1.20388 0.94715 0.82312 0.96450 1.21444 0.95232 0.93989 1.47964 0.89689 1.24945 0.97194 0.95986 0.94638 1.69860 1.33083 1.03931 1.43878 0.87248 0.85761 0.79512 0.80050 1.18939 1.20080 1.18251 1.20225 0.95450 0.94168 0.80238 1.22203 1.01874 0.98984 0.98202 1.22215 0.95536 1.03669 1.00465 1.21932 0.95088 0.98593 1.01485 1.21791 0.96223 1.00771 1.01929 0.93026 0.92125 0.91730 0.90869 0.88801 0.72446 0.93069 0.95473 0.91820 0.90120 0.92381 0.91919 0.90296 0.92936 0.92202 0.91814 0.90303 0.92783 0.92648 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 37.16 0.37 -1.66 16 2 C -0.04 -0.59 6.16 -27.88 -0.17 -0.76 16 3 C 0.06 1.17 6.84 -79.77 -0.55 0.62 16 4 N -0.38 -7.37 12.01 34.78 0.42 -6.95 16 5 O 0.07 1.49 11.06 18.66 0.21 1.69 16 6 C 0.01 0.18 9.71 30.41 0.30 0.47 16 7 C -0.26 -5.31 6.26 -102.89 -0.64 -5.95 16 8 C 0.60 12.25 7.02 -12.53 -0.09 12.17 16 9 O -0.56 -11.47 12.13 5.27 0.06 -11.40 16 10 N -0.57 -11.02 1.78 -161.44 -0.29 -11.31 16 11 C 0.18 3.68 3.17 -5.19 -0.02 3.66 16 12 C -0.55 -12.94 7.39 -34.44 -0.25 -13.20 16 13 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 14 C 0.08 1.91 5.11 -17.82 -0.09 1.82 16 15 N -0.87 -23.28 13.96 55.43 0.77 -22.50 16 16 Si 0.85 17.62 26.81 -169.99 -4.56 13.07 16 17 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.26 -5.03 6.54 56.52 0.37 -4.66 16 20 C 0.18 3.09 0.73 -131.82 -0.10 2.99 16 21 C -0.16 -2.43 6.81 37.16 0.25 -2.18 16 22 C -0.16 -2.73 8.22 37.16 0.31 -2.42 16 23 C -0.13 -1.99 4.88 -26.73 -0.13 -2.12 16 24 C -0.15 -2.09 9.36 37.16 0.35 -1.74 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.48 7.31 -51.93 -0.38 1.10 16 30 H 0.26 5.41 2.63 -52.49 -0.14 5.27 16 31 H 0.05 1.00 4.58 -51.93 -0.24 0.76 16 32 H 0.03 0.55 4.33 -51.93 -0.22 0.33 16 33 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.08 1.44 7.53 -51.92 -0.39 1.05 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.96 4.99 -51.93 -0.26 0.70 16 37 H 0.08 1.44 6.05 -51.93 -0.31 1.12 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.32 6.44 -51.93 -0.33 0.99 16 42 H 0.05 0.83 7.68 -51.93 -0.40 0.43 16 43 H 0.05 0.72 6.38 -51.93 -0.33 0.39 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -26.19 337.60 -5.17 -31.36 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.40 Total: 9.26 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -0.47 Total: -8.30 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.90 Total: -40.77 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.27 Total: -9.71 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -4.56 Total: 13.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.19 -5.17 -31.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602305878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.180 kcal (2) G-P(sol) polarization free energy of solvation -26.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds