Wall clock time and date at job start Tue Mar 31 2020 06:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.46995 * 2 1 4 4 N 1.30007 * 127.33665 * 269.68462 * 3 2 1 5 5 O 1.20664 * 112.30357 * 179.79163 * 4 3 2 6 6 C 1.33487 * 113.15281 * 0.50047 * 5 4 3 7 7 C 1.37366 * 106.34505 * 359.70374 * 6 5 4 8 8 C 1.47399 * 128.56595 * 180.02562 * 7 6 5 9 9 O 1.21609 * 119.99516 * 170.72195 * 8 7 6 10 10 N 1.34772 * 120.00001 * 350.72242 * 8 7 6 11 11 C 1.46503 * 120.00241 * 0.93828 * 10 8 7 12 12 C 1.50701 * 109.46658 * 83.32574 * 11 10 8 13 13 H 1.07993 * 120.00544 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99427 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99471 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00166 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47370 * 90.00539 * 16 14 12 18 18 H 1.48506 * 109.46810 * 210.00120 * 16 14 12 19 19 H 1.48500 * 109.47184 * 329.99828 * 16 14 12 20 20 C 1.46500 * 120.00026 * 180.94094 * 10 8 7 21 21 C 1.52998 * 109.47307 * 184.10017 * 20 10 8 22 22 C 1.52996 * 109.47090 * 304.10388 * 20 10 8 23 23 C 1.53004 * 109.47113 * 64.10125 * 20 10 8 24 24 C 1.53007 * 109.46864 * 62.76342 * 23 20 10 25 25 H 1.08996 * 109.47304 * 59.99983 * 1 2 3 26 26 H 1.08997 * 109.47120 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47094 * 299.99902 * 1 2 3 28 28 H 1.08993 * 109.47179 * 240.00597 * 2 1 3 29 29 H 1.08996 * 109.47304 * 120.00017 * 2 1 3 30 30 H 1.08000 * 126.82989 * 179.66329 * 6 5 4 31 31 H 1.09004 * 109.47168 * 203.32673 * 11 10 8 32 32 H 1.09002 * 109.47177 * 323.32513 * 11 10 8 33 33 H 0.96999 * 119.99814 * 179.97438 * 15 14 12 34 34 H 1.09007 * 109.46822 * 60.00210 * 21 20 10 35 35 H 1.08999 * 109.46999 * 179.97438 * 21 20 10 36 36 H 1.08996 * 109.47507 * 300.00127 * 21 20 10 37 37 H 1.09002 * 109.47259 * 65.42200 * 22 20 10 38 38 H 1.08997 * 109.47089 * 185.41789 * 22 20 10 39 39 H 1.09000 * 109.47188 * 305.42174 * 22 20 10 40 40 H 1.09001 * 109.47290 * 182.75528 * 23 20 10 41 41 H 1.08993 * 109.47298 * 302.76325 * 23 20 10 42 42 H 1.09000 * 109.46926 * 299.99343 * 24 23 20 43 43 H 1.08993 * 109.47176 * 59.99909 * 24 23 20 44 44 H 1.08998 * 109.46855 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3005 2.1624 -1.0337 5 8 2.6835 3.2630 -0.7207 6 6 2.7463 3.4408 0.6008 7 6 2.3296 2.2620 1.1697 8 6 2.2094 1.9236 2.5993 9 8 1.6641 0.8900 2.9356 10 7 2.7040 2.7597 3.5335 11 6 3.3426 4.0146 3.1292 12 6 2.2865 5.0657 2.9035 13 1 1.2440 4.8234 3.0474 14 6 2.6514 6.3369 2.5135 15 7 1.7298 7.2543 2.3170 16 14 4.4547 6.7563 2.2654 17 1 4.8374 6.4828 0.8569 18 1 4.6748 8.1934 2.5680 19 1 5.2856 5.9262 3.1742 20 6 2.6029 2.4136 4.9535 21 6 3.1435 3.5680 5.7996 22 6 1.1377 2.1599 5.3135 23 6 3.4220 1.1512 5.2303 24 6 4.8980 1.4263 4.9355 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.0626 4.3337 1.1196 31 1 4.0228 4.3455 3.9141 32 1 3.9015 3.8571 2.2067 33 1 1.9865 8.1486 2.0430 34 1 2.5599 4.4673 5.6024 35 1 3.0678 3.3106 6.8560 36 1 4.1873 3.7487 5.5431 37 1 0.7805 1.2777 4.7822 38 1 1.0504 1.9971 6.3877 39 1 0.5383 3.0240 5.0270 40 1 3.3075 0.8658 6.2760 41 1 3.0687 0.3416 4.5918 42 1 5.0126 1.7116 3.8898 43 1 5.2513 2.2359 5.5740 44 1 5.4814 0.5268 5.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602305878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:12 Heat of formation + Delta-G solvation = 18.313239 kcal Electronic energy + Delta-G solvation = -25966.196984 eV Core-core repulsion = 22501.097756 eV Total energy + Delta-G solvation = -3465.099228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.81250 -41.35003 -38.00779 -36.24214 -35.93383 -34.19450 -32.54737 -32.15281 -31.17474 -30.16102 -28.10454 -26.06583 -25.09331 -24.63962 -23.79145 -22.23887 -21.53182 -19.66498 -19.15527 -18.56485 -18.28490 -17.68336 -16.87307 -16.47865 -16.10841 -15.70046 -15.47079 -15.19509 -14.94351 -14.72068 -14.52441 -14.22270 -14.06155 -13.68097 -13.44904 -13.20066 -12.95913 -12.80241 -12.75472 -12.67879 -12.62319 -12.48993 -12.23676 -12.01061 -11.87256 -11.83159 -11.79280 -11.60713 -11.49992 -10.95619 -10.89394 -10.59346 -10.49388 -9.38373 -8.34521 -6.42686 0.20965 0.79225 1.37541 1.41708 1.48698 1.91624 2.27982 2.28202 2.41146 2.98043 3.07296 3.39332 3.68955 4.00370 4.06344 4.07906 4.19044 4.29854 4.33926 4.39434 4.41584 4.53158 4.64597 4.67802 4.75848 4.79487 4.85013 4.90382 4.91317 4.96574 4.97988 5.10685 5.16984 5.20000 5.24020 5.27875 5.32028 5.37119 5.46376 5.57151 5.86098 6.16377 6.56770 6.68828 7.15703 7.20554 7.32932 8.80498 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011282 B = 0.008854 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.318892 B = 3161.812185 C = 4718.726153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 C 0.065 3.935 4 N -0.382 5.382 5 O 0.069 5.931 6 C 0.005 3.995 7 C -0.278 4.278 8 C 0.596 3.404 9 O -0.561 6.561 10 N -0.573 5.573 11 C 0.190 3.810 12 C -0.536 4.536 13 H 0.034 0.966 14 C 0.032 3.968 15 N -0.926 5.926 16 Si 0.906 3.094 17 H -0.253 1.253 18 H -0.281 1.281 19 H -0.230 1.230 20 C 0.172 3.828 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.125 4.125 24 C -0.147 4.147 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.255 0.745 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.272 0.728 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.029 0.971 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -10.384 3.234 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 C -0.099 4.099 4 N -0.094 5.094 5 O 0.015 5.985 6 C -0.076 4.076 7 C -0.285 4.285 8 C 0.385 3.615 9 O -0.444 6.444 10 N -0.303 5.303 11 C 0.068 3.932 12 C -0.574 4.574 13 H 0.052 0.948 14 C -0.170 4.170 15 N -0.563 5.563 16 Si 0.727 3.273 17 H -0.177 1.177 18 H -0.206 1.206 19 H -0.153 1.153 20 C 0.088 3.912 21 C -0.207 4.207 22 C -0.212 4.212 23 C -0.163 4.163 24 C -0.204 4.204 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.270 0.730 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.048 0.952 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.898 -10.837 2.079 12.512 hybrid contribution 0.055 1.159 0.478 1.255 sum 5.954 -9.678 2.557 11.647 Atomic orbital electron populations 1.21605 0.93220 1.03381 1.01041 1.20055 0.97060 0.85926 1.04516 1.25287 0.98637 0.99730 0.86253 1.73526 1.18339 0.93077 1.24423 1.84530 1.63017 1.26495 1.24420 1.28711 0.95168 1.01373 0.82318 1.22471 1.14113 0.95795 0.96148 1.16825 0.78184 0.83137 0.83384 1.90602 1.45448 1.26370 1.81944 1.47849 1.56631 1.19888 1.05938 1.20252 0.93809 0.81759 0.97374 1.21370 0.93702 0.95106 1.47238 0.94773 1.25684 1.01586 0.95587 0.94117 1.70013 1.35712 1.04545 1.46059 0.86333 0.80553 0.79228 0.81163 1.17704 1.20649 1.15268 1.20566 0.95726 0.95891 0.78997 1.22160 1.01553 0.97100 0.99878 1.22146 0.95395 1.01460 1.02213 1.21856 0.95349 0.96481 1.02609 1.21776 0.95541 1.02164 1.00967 0.93081 0.88989 0.94319 0.88324 0.88904 0.73031 0.91473 0.94437 0.91882 0.93036 0.89218 0.91068 0.91860 0.89852 0.95171 0.89186 0.92283 0.94678 0.91336 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.89 71.98 0.71 -3.03 16 2 C -0.04 -1.12 6.16 29.85 0.18 -0.93 16 3 C 0.06 2.41 6.84 45.16 0.31 2.72 16 4 N -0.38 -14.76 12.01 -44.77 -0.54 -15.30 16 5 O 0.07 2.76 11.06 77.03 0.85 3.61 16 6 C 0.00 0.19 9.71 67.61 0.66 0.84 16 7 C -0.28 -11.34 6.26 -18.74 -0.12 -11.46 16 8 C 0.60 24.36 7.02 86.66 0.61 24.97 16 9 O -0.56 -23.27 12.13 -4.06 -0.05 -23.31 16 10 N -0.57 -21.93 1.78 -782.93 -1.39 -23.33 16 11 C 0.19 7.55 3.17 85.63 0.27 7.82 16 12 C -0.54 -26.03 7.39 25.60 0.19 -25.84 16 13 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 14 C 0.03 1.57 5.11 84.66 0.43 2.01 16 15 N -0.93 -51.25 13.96 21.45 0.30 -50.95 16 16 Si 0.91 35.59 26.81 68.60 1.84 37.43 16 17 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 18 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.23 -7.94 6.54 99.48 0.65 -7.29 16 20 C 0.17 5.56 0.73 3.60 0.00 5.56 16 21 C -0.15 -4.37 6.81 71.98 0.49 -3.88 16 22 C -0.15 -5.18 8.22 71.98 0.59 -4.59 16 23 C -0.12 -3.42 4.88 30.60 0.15 -3.27 16 24 C -0.15 -3.64 9.36 71.98 0.67 -2.96 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.09 2.81 7.31 -2.39 -0.02 2.79 16 30 H 0.25 10.67 2.63 -2.91 -0.01 10.66 16 31 H 0.07 2.49 4.58 -2.39 -0.01 2.48 16 32 H 0.04 1.47 4.33 -2.39 -0.01 1.46 16 33 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 34 H 0.05 1.81 7.53 -2.38 -0.02 1.79 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.95 4.99 -2.39 -0.01 1.93 16 37 H 0.06 2.31 6.05 -2.39 -0.01 2.30 16 38 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.88 6.44 -2.39 -0.02 1.86 16 42 H 0.03 0.99 7.68 -2.39 -0.02 0.97 16 43 H 0.07 1.51 6.38 -2.39 -0.02 1.49 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -58.87 337.60 7.12 -51.75 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.96 Total: 32.14 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 5.15 Total: -12.04 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -1.63 Total: -89.58 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.80 Total: -19.71 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 1.84 Total: 37.43 kcal Total: -58.87 7.12 -51.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602305878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.061 kcal (2) G-P(sol) polarization free energy of solvation -58.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds