Wall clock time and date at job start Tue Mar 31 2020 07:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47187 * 2 1 4 4 C 1.53002 * 109.47567 * 64.99531 * 3 2 1 5 5 C 1.52996 * 109.47342 * 186.11608 * 4 3 2 6 6 C 1.52997 * 109.47496 * 184.99780 * 3 2 1 7 7 N 1.46504 * 109.47128 * 65.85025 * 6 3 2 8 8 C 1.46494 * 120.00188 * 264.35473 * 7 6 3 9 9 C 1.50698 * 109.47008 * 263.54521 * 8 7 6 10 10 H 1.08004 * 120.00291 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00095 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99866 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99855 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47437 * 90.00060 * 13 11 9 15 15 H 1.48511 * 109.46944 * 209.99985 * 13 11 9 16 16 H 1.48498 * 109.47612 * 329.99550 * 13 11 9 17 17 C 1.34784 * 119.99577 * 84.35178 * 7 6 3 18 18 O 1.21614 * 120.00341 * 4.29869 * 17 7 6 19 19 C 1.47425 * 119.99647 * 184.30171 * 17 7 6 20 20 C 1.36090 * 126.44511 * 174.10451 * 19 17 7 21 21 O 1.34259 * 106.94543 * 180.26188 * 20 19 17 22 22 C 1.34049 * 108.22883 * 359.97438 * 21 20 19 23 23 C 1.50704 * 125.37525 * 180.02562 * 22 21 20 24 24 N 1.29933 * 109.24242 * 0.02562 * 22 21 20 25 25 H 1.08999 * 109.47462 * 300.00355 * 1 2 3 26 26 H 1.09007 * 109.47168 * 60.00315 * 1 2 3 27 27 H 1.09002 * 109.47105 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47462 * 239.99645 * 2 1 3 29 29 H 1.09005 * 109.47155 * 119.99132 * 2 1 3 30 30 H 1.09007 * 109.46846 * 304.99744 * 3 2 1 31 31 H 1.09001 * 109.46788 * 306.11699 * 4 3 2 32 32 H 1.09000 * 109.46852 * 66.11432 * 4 3 2 33 33 H 1.08998 * 109.47422 * 63.87242 * 5 4 3 34 34 H 1.09004 * 109.47268 * 183.87651 * 5 4 3 35 35 H 1.09005 * 109.47051 * 303.87398 * 5 4 3 36 36 H 1.08992 * 109.47085 * 305.85564 * 6 3 2 37 37 H 1.08999 * 109.47369 * 185.85054 * 6 3 2 38 38 H 1.08993 * 109.47367 * 23.54661 * 8 7 6 39 39 H 1.09003 * 109.47249 * 143.55136 * 8 7 6 40 40 H 0.96996 * 119.99447 * 180.02562 * 12 11 9 41 41 H 1.07997 * 126.52782 * 0.25107 * 20 19 17 42 42 H 1.09000 * 109.46432 * 269.95471 * 23 22 21 43 43 H 1.08999 * 109.47244 * 29.95633 * 23 22 21 44 44 H 1.08996 * 109.46635 * 149.95996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1267 1.3073 5 6 2.0102 3.6086 1.2447 6 6 3.5648 1.4444 -0.1257 7 7 3.9473 0.9168 -1.4378 8 6 4.3001 -0.4975 -1.5841 9 6 5.7979 -0.6508 -1.5206 10 1 6.4244 0.2184 -1.3845 11 6 6.3686 -1.9006 -1.6364 12 7 5.6057 -2.9590 -1.8017 13 14 8.2252 -2.0905 -1.5571 14 1 8.6412 -2.3042 -0.1477 15 1 8.6389 -3.2572 -2.3776 16 1 8.8715 -0.8614 -2.0831 17 6 3.9746 1.7326 -2.5103 18 8 3.7581 2.9217 -2.3755 19 6 4.2668 1.1834 -3.8468 20 6 4.2182 1.8595 -5.0270 21 8 4.5489 0.9865 -5.9919 22 6 4.7959 -0.1994 -5.4178 23 6 5.2014 -1.4543 -6.1473 24 7 4.6306 -0.0960 -4.1332 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6053 1.9815 -0.8419 31 1 0.5588 2.0300 1.4498 32 1 2.1559 1.6549 2.1406 33 1 1.4377 4.0954 0.4552 34 1 1.7850 4.0811 2.2009 35 1 3.0752 3.7053 1.0336 36 1 3.9946 0.8190 0.6567 37 1 3.9367 2.4637 -0.0215 38 1 3.8417 -1.0715 -0.7788 39 1 3.9377 -0.8650 -2.5442 40 1 6.0072 -3.8383 -1.8827 41 1 3.9621 2.8999 -5.1617 42 1 4.3100 -2.0147 -6.4290 43 1 5.7619 -1.1885 -7.0435 44 1 5.8254 -2.0670 -5.4968 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619788643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:18 Heat of formation + Delta-G solvation = -22.775452 kcal Electronic energy + Delta-G solvation = -25091.552369 eV Core-core repulsion = 21624.671401 eV Total energy + Delta-G solvation = -3466.880968 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.79946 -39.13551 -36.84713 -34.73299 -33.89323 -32.26307 -31.67030 -31.49615 -28.40415 -27.37696 -26.63065 -24.59438 -23.19347 -22.52335 -21.90232 -20.96791 -19.58486 -18.74516 -16.90691 -16.45448 -16.15973 -15.86808 -15.60799 -14.53760 -14.38176 -14.29759 -13.91301 -13.78646 -13.54444 -13.28290 -13.01548 -12.77043 -12.72749 -12.26743 -12.15869 -12.08462 -11.69507 -11.57251 -11.42838 -11.05563 -10.97672 -10.86324 -10.80132 -10.50219 -10.34280 -10.12268 -10.06325 -9.96500 -9.57563 -9.36971 -9.13451 -8.43525 -8.26428 -7.54914 -5.95000 -3.95213 1.67707 2.76160 3.11946 3.30534 3.37240 3.42251 3.89460 4.07125 4.47066 4.57699 5.07567 5.17622 5.25783 5.29764 5.40039 5.40839 5.52075 5.62216 5.67834 5.72096 5.73798 5.87664 5.95608 5.97383 6.03965 6.10862 6.17797 6.19790 6.24721 6.27809 6.33946 6.41439 6.47087 6.60573 6.68246 6.70420 6.82630 6.95821 7.58225 7.83697 7.96514 8.21337 8.35411 8.41816 8.96199 9.09296 9.65994 11.13098 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.006483 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.142565 B = 4317.973658 C = 5475.960879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.100 4.100 4 C -0.116 4.116 5 C -0.153 4.153 6 C 0.122 3.878 7 N -0.574 5.574 8 C 0.226 3.774 9 C -0.505 4.505 10 H 0.049 0.951 11 C 0.070 3.930 12 N -0.890 5.890 13 Si 0.883 3.117 14 H -0.283 1.283 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.594 3.406 18 O -0.575 6.575 19 C -0.048 4.048 20 C -0.022 4.022 21 O -0.210 6.210 22 C 0.167 3.833 23 C -0.051 4.051 24 N -0.389 5.389 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.079 0.921 40 H 0.258 0.742 41 H 0.221 0.779 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 5.017 -2.681 8.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.120 4.120 4 C -0.154 4.154 5 C -0.210 4.210 6 C -0.001 4.001 7 N -0.302 5.302 8 C 0.107 3.893 9 C -0.544 4.544 10 H 0.067 0.933 11 C -0.131 4.131 12 N -0.530 5.530 13 Si 0.712 3.288 14 H -0.209 1.209 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.382 3.618 18 O -0.457 6.457 19 C -0.168 4.168 20 C -0.096 4.096 21 O -0.097 6.097 22 C -0.042 4.042 23 C -0.109 4.109 24 N -0.118 5.118 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.237 0.763 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.724 4.864 -2.194 8.584 hybrid contribution 1.154 0.325 -0.356 1.251 sum -5.569 5.189 -2.550 8.028 Atomic orbital electron populations 1.21805 0.96676 1.01015 1.01129 1.21642 0.94982 0.96396 1.03003 1.21581 0.96367 0.96176 0.97856 1.21545 1.00890 0.95519 0.97411 1.21820 1.02223 0.96194 1.00760 1.21478 0.93476 0.99927 0.85259 1.48143 1.62754 1.13029 1.06228 1.20014 0.95927 0.73452 0.99950 1.21269 0.91618 0.92733 1.48771 0.93287 1.24724 0.97136 0.95794 0.95433 1.69930 1.34405 0.98314 1.50342 0.86743 0.86722 0.77455 0.77889 1.20924 1.21238 1.20305 1.16821 0.77193 0.85034 0.82771 1.90695 1.53857 1.15215 1.85941 1.21888 1.08350 0.91012 0.95597 1.25000 1.02815 0.95985 0.85765 1.84296 1.66113 1.20387 1.38946 1.26648 1.01669 0.87158 0.88683 1.20187 1.02771 0.88556 0.99371 1.71614 1.12648 1.16631 1.10915 0.93019 0.93285 0.93156 0.90804 0.92073 0.91216 0.91964 0.92083 0.92920 0.93421 0.92183 0.90356 0.90881 0.95190 0.90414 0.93182 0.76304 0.89474 0.90238 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.68 37.15 0.36 -1.63 16 2 C -0.12 -1.96 4.82 -26.73 -0.13 -2.09 16 3 C -0.10 -1.61 2.00 -90.62 -0.18 -1.79 16 4 C -0.12 -1.53 5.28 -26.73 -0.14 -1.67 16 5 C -0.15 -1.97 9.78 37.16 0.36 -1.60 16 6 C 0.12 2.30 4.68 -4.04 -0.02 2.28 16 7 N -0.57 -12.61 2.22 -176.34 -0.39 -13.01 16 8 C 0.23 5.54 3.65 -5.20 -0.02 5.52 16 9 C -0.50 -13.62 8.45 -34.44 -0.29 -13.91 16 10 H 0.05 1.39 7.81 -52.48 -0.41 0.98 16 11 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 12 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 13 Si 0.88 21.23 29.54 -169.99 -5.02 16.21 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 C 0.59 13.25 7.57 -12.52 -0.09 13.15 16 18 O -0.57 -13.06 16.54 5.27 0.09 -12.97 16 19 C -0.05 -1.01 6.65 -83.02 -0.55 -1.56 16 20 C -0.02 -0.38 11.95 29.96 0.36 -0.02 16 21 O -0.21 -3.53 10.73 6.51 0.07 -3.46 16 22 C 0.17 3.01 8.30 -13.08 -0.11 2.91 16 23 C -0.05 -0.70 10.51 36.01 0.38 -0.32 16 24 N -0.39 -8.50 7.16 -7.65 -0.05 -8.55 16 25 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.38 6.03 -51.93 -0.31 1.07 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 31 H 0.06 0.75 6.30 -51.93 -0.33 0.42 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.84 6.32 -51.93 -0.33 0.51 16 36 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 37 H 0.07 1.39 5.68 -51.93 -0.29 1.09 16 38 H 0.03 0.77 6.81 -51.93 -0.35 0.42 16 39 H 0.08 2.03 5.26 -51.93 -0.27 1.75 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.22 2.99 8.06 -52.49 -0.42 2.57 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -30.75 356.04 -6.22 -36.97 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.84 Total: 2.25 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.17 Total: 1.06 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.29 Total: -45.43 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.16 Total: -16.44 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.75 -6.22 -36.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619788643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.198 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds