Wall clock time and date at job start Tue Mar 31 2020 07:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47187 * 2 1 4 4 C 1.53002 * 109.47567 * 64.99531 * 3 2 1 5 5 C 1.52996 * 109.47342 * 186.11608 * 4 3 2 6 6 C 1.52997 * 109.47496 * 184.99780 * 3 2 1 7 7 N 1.46504 * 109.47128 * 65.85025 * 6 3 2 8 8 C 1.46494 * 120.00188 * 264.35473 * 7 6 3 9 9 C 1.50698 * 109.47008 * 263.54521 * 8 7 6 10 10 H 1.08004 * 120.00291 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00095 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99866 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99855 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47437 * 90.00060 * 13 11 9 15 15 H 1.48511 * 109.46944 * 209.99985 * 13 11 9 16 16 H 1.48498 * 109.47612 * 329.99550 * 13 11 9 17 17 C 1.34784 * 119.99577 * 84.35178 * 7 6 3 18 18 O 1.21614 * 120.00341 * 4.29869 * 17 7 6 19 19 C 1.47425 * 119.99647 * 184.30171 * 17 7 6 20 20 C 1.36090 * 126.44511 * 174.10451 * 19 17 7 21 21 O 1.34259 * 106.94543 * 180.26188 * 20 19 17 22 22 C 1.34049 * 108.22883 * 359.97438 * 21 20 19 23 23 C 1.50704 * 125.37525 * 180.02562 * 22 21 20 24 24 N 1.29933 * 109.24242 * 0.02562 * 22 21 20 25 25 H 1.08999 * 109.47462 * 300.00355 * 1 2 3 26 26 H 1.09007 * 109.47168 * 60.00315 * 1 2 3 27 27 H 1.09002 * 109.47105 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47462 * 239.99645 * 2 1 3 29 29 H 1.09005 * 109.47155 * 119.99132 * 2 1 3 30 30 H 1.09007 * 109.46846 * 304.99744 * 3 2 1 31 31 H 1.09001 * 109.46788 * 306.11699 * 4 3 2 32 32 H 1.09000 * 109.46852 * 66.11432 * 4 3 2 33 33 H 1.08998 * 109.47422 * 63.87242 * 5 4 3 34 34 H 1.09004 * 109.47268 * 183.87651 * 5 4 3 35 35 H 1.09005 * 109.47051 * 303.87398 * 5 4 3 36 36 H 1.08992 * 109.47085 * 305.85564 * 6 3 2 37 37 H 1.08999 * 109.47369 * 185.85054 * 6 3 2 38 38 H 1.08993 * 109.47367 * 23.54661 * 8 7 6 39 39 H 1.09003 * 109.47249 * 143.55136 * 8 7 6 40 40 H 0.96996 * 119.99447 * 180.02562 * 12 11 9 41 41 H 1.07997 * 126.52782 * 0.25107 * 20 19 17 42 42 H 1.09000 * 109.46432 * 269.95471 * 23 22 21 43 43 H 1.08999 * 109.47244 * 29.95633 * 23 22 21 44 44 H 1.08996 * 109.46635 * 149.95996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1267 1.3073 5 6 2.0102 3.6086 1.2447 6 6 3.5648 1.4444 -0.1257 7 7 3.9473 0.9168 -1.4378 8 6 4.3001 -0.4975 -1.5841 9 6 5.7979 -0.6508 -1.5206 10 1 6.4244 0.2184 -1.3845 11 6 6.3686 -1.9006 -1.6364 12 7 5.6057 -2.9590 -1.8017 13 14 8.2252 -2.0905 -1.5571 14 1 8.6412 -2.3042 -0.1477 15 1 8.6389 -3.2572 -2.3776 16 1 8.8715 -0.8614 -2.0831 17 6 3.9746 1.7326 -2.5103 18 8 3.7581 2.9217 -2.3755 19 6 4.2668 1.1834 -3.8468 20 6 4.2182 1.8595 -5.0270 21 8 4.5489 0.9865 -5.9919 22 6 4.7959 -0.1994 -5.4178 23 6 5.2014 -1.4543 -6.1473 24 7 4.6306 -0.0960 -4.1332 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6053 1.9815 -0.8419 31 1 0.5588 2.0300 1.4498 32 1 2.1559 1.6549 2.1406 33 1 1.4377 4.0954 0.4552 34 1 1.7850 4.0811 2.2009 35 1 3.0752 3.7053 1.0336 36 1 3.9946 0.8190 0.6567 37 1 3.9367 2.4637 -0.0215 38 1 3.8417 -1.0715 -0.7788 39 1 3.9377 -0.8650 -2.5442 40 1 6.0072 -3.8383 -1.8827 41 1 3.9621 2.8999 -5.1617 42 1 4.3100 -2.0147 -6.4290 43 1 5.7619 -1.1885 -7.0435 44 1 5.8254 -2.0670 -5.4968 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619788643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:17 Heat of formation + Delta-G solvation = -41.089214 kcal Electronic energy + Delta-G solvation = -25092.346513 eV Core-core repulsion = 21624.671401 eV Total energy + Delta-G solvation = -3467.675112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.23621 -40.78517 -38.26902 -36.40705 -35.43889 -34.26022 -32.97932 -32.64137 -29.95710 -28.88495 -28.27270 -25.95580 -25.07464 -23.84143 -23.33287 -22.38217 -20.93829 -20.29461 -18.71068 -18.16294 -17.70959 -17.43931 -17.20829 -16.31691 -16.06006 -15.64104 -15.25658 -15.05532 -14.89234 -14.66956 -14.38849 -14.27147 -14.08871 -13.83566 -13.66792 -13.39860 -13.18670 -12.87300 -12.84542 -12.72237 -12.65114 -12.32819 -12.18155 -12.07789 -12.00639 -11.70520 -11.48116 -11.34038 -11.24167 -11.11694 -10.83845 -10.28753 -9.89955 -9.31090 -8.03327 -6.10412 0.22463 1.23725 1.38122 1.40353 1.48951 1.76435 2.26570 2.41472 2.50946 3.17319 3.27875 3.72024 3.90575 3.94619 3.96640 4.03840 4.37763 4.45010 4.47635 4.54483 4.61158 4.68248 4.70313 4.73147 4.77615 4.82884 4.91763 4.93367 4.95918 5.04538 5.09594 5.14157 5.26226 5.27730 5.29477 5.44093 5.49251 5.53685 5.59915 5.90512 5.97323 6.29202 6.54775 6.76107 6.99063 7.28463 7.54227 9.03620 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.006483 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.142565 B = 4317.973658 C = 5475.960879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.109 4.109 5 C -0.150 4.150 6 C 0.118 3.882 7 N -0.580 5.580 8 C 0.249 3.751 9 C -0.514 4.514 10 H 0.027 0.973 11 C 0.035 3.965 12 N -0.910 5.910 13 Si 0.938 3.062 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.285 1.285 17 C 0.588 3.412 18 O -0.587 6.587 19 C -0.096 4.096 20 C 0.010 3.990 21 O -0.198 6.198 22 C 0.171 3.829 23 C -0.049 4.049 24 N -0.440 5.440 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.013 0.987 39 H 0.066 0.934 40 H 0.262 0.738 41 H 0.256 0.744 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 5.374 -3.190 9.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C -0.108 4.108 4 C -0.147 4.147 5 C -0.208 4.208 6 C -0.004 4.004 7 N -0.307 5.307 8 C 0.129 3.871 9 C -0.553 4.553 10 H 0.046 0.954 11 C -0.164 4.164 12 N -0.550 5.550 13 Si 0.765 3.235 14 H -0.205 1.205 15 H -0.200 1.200 16 H -0.211 1.211 17 C 0.376 3.624 18 O -0.471 6.471 19 C -0.215 4.215 20 C -0.064 4.064 21 O -0.084 6.084 22 C -0.038 4.038 23 C -0.106 4.106 24 N -0.169 5.169 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.030 0.970 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.272 0.728 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.093 5.220 -2.690 9.208 hybrid contribution 1.272 0.238 -0.257 1.319 sum -5.821 5.457 -2.947 8.506 Atomic orbital electron populations 1.21749 0.94226 1.01829 1.02103 1.21574 0.97108 0.95835 1.01248 1.21466 0.93898 0.96413 0.99062 1.21528 1.02185 0.95411 0.95599 1.21794 1.00997 0.96047 1.01914 1.21640 0.95674 0.99244 0.83864 1.48128 1.62968 1.12157 1.07450 1.19555 0.94412 0.74701 0.98479 1.21310 0.92569 0.92199 1.49180 0.95444 1.25274 1.00655 0.95464 0.95036 1.70006 1.35835 0.98623 1.50575 0.85897 0.82325 0.77257 0.78042 1.20475 1.19951 1.21094 1.17094 0.76845 0.84975 0.83446 1.90659 1.54703 1.15386 1.86351 1.21931 1.11623 0.91868 0.96112 1.25591 0.99537 0.96838 0.84456 1.84341 1.65686 1.20046 1.38370 1.27397 1.00011 0.88303 0.88119 1.20397 1.03859 0.86594 0.99767 1.71486 1.14711 1.17536 1.13138 0.90813 0.93448 0.92490 0.94304 0.92097 0.92836 0.89908 0.91318 0.93345 0.91039 0.93878 0.90956 0.91213 0.96951 0.91635 0.92868 0.72784 0.87284 0.86635 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.68 71.98 0.70 -2.94 16 2 C -0.12 -3.89 4.82 30.59 0.15 -3.75 16 3 C -0.09 -2.88 2.00 -10.79 -0.02 -2.91 16 4 C -0.11 -2.74 5.28 30.59 0.16 -2.58 16 5 C -0.15 -3.68 9.78 71.98 0.70 -2.98 16 6 C 0.12 4.63 4.68 86.38 0.40 5.03 16 7 N -0.58 -26.61 2.22 -830.05 -1.84 -28.46 16 8 C 0.25 12.78 3.65 85.63 0.31 13.10 16 9 C -0.51 -28.60 8.45 25.60 0.22 -28.38 16 10 H 0.03 1.61 7.81 -2.91 -0.02 1.59 16 11 C 0.04 1.94 5.46 84.66 0.46 2.40 16 12 N -0.91 -50.95 13.29 21.45 0.28 -50.67 16 13 Si 0.94 43.86 29.54 68.60 2.03 45.88 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 16 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 17 C 0.59 26.98 7.57 86.66 0.66 27.64 16 18 O -0.59 -27.15 16.54 -4.07 -0.07 -27.22 16 19 C -0.10 -4.10 6.65 40.41 0.27 -3.83 16 20 C 0.01 0.33 11.95 67.32 0.80 1.13 16 21 O -0.20 -6.28 10.73 0.38 0.00 -6.27 16 22 C 0.17 6.03 8.30 88.39 0.73 6.77 16 23 C -0.05 -1.26 10.51 71.24 0.75 -0.51 16 24 N -0.44 -19.52 7.16 -293.03 -2.10 -21.62 16 25 H 0.07 1.56 6.44 -2.39 -0.02 1.55 16 26 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.52 6.03 -2.39 -0.01 1.51 16 29 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.08 1.77 6.30 -2.39 -0.02 1.75 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.04 1.19 6.32 -2.38 -0.02 1.18 16 36 H 0.07 2.85 8.03 -2.39 -0.02 2.83 16 37 H 0.07 2.75 5.68 -2.39 -0.01 2.74 16 38 H 0.01 0.68 6.81 -2.39 -0.02 0.66 16 39 H 0.07 3.59 5.26 -2.39 -0.01 3.57 16 40 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.26 6.32 8.06 -2.91 -0.02 6.30 16 42 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -67.93 356.04 5.59 -62.34 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.99 Total: 17.81 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 6.29 Total: 8.20 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -3.66 Total: -100.74 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.06 Total: -33.49 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -67.93 5.59 -62.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619788643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.253 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds