Wall clock time and date at job start Tue Mar 31 2020 07:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47088 * 2 1 4 4 C 1.53005 * 109.47432 * 119.99960 * 2 1 3 5 5 N 1.46492 * 109.46757 * 64.99860 * 4 2 1 6 6 C 1.46504 * 120.00566 * 264.92128 * 5 4 2 7 7 C 1.50697 * 109.47375 * 264.34570 * 6 5 4 8 8 H 1.08001 * 119.99751 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00114 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99809 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99861 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47140 * 90.00234 * 11 9 7 13 13 H 1.48504 * 109.47076 * 210.00703 * 11 9 7 14 14 H 1.48502 * 109.47330 * 330.00170 * 11 9 7 15 15 C 1.34776 * 120.00106 * 84.92627 * 5 4 2 16 16 O 1.21587 * 119.99669 * 4.67813 * 15 5 4 17 17 C 1.47513 * 120.00373 * 184.68019 * 15 5 4 18 18 C 1.36829 * 126.94506 * 174.48086 * 17 15 5 19 19 C 1.41263 * 103.84331 * 180.12301 * 18 17 15 20 20 C 1.50705 * 126.70188 * 179.85114 * 19 18 17 21 21 C 1.53003 * 109.46534 * 84.71908 * 20 19 18 22 22 C 1.53000 * 109.47158 * 324.71880 * 20 19 18 23 23 N 1.30126 * 106.59136 * 359.59522 * 19 18 17 24 24 O 1.20888 * 111.98394 * 0.26050 * 23 19 18 25 25 H 1.09006 * 109.46921 * 299.99896 * 1 2 3 26 26 H 1.08998 * 109.46902 * 59.99834 * 1 2 3 27 27 H 1.08997 * 109.46512 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47237 * 240.00426 * 2 1 3 29 29 H 1.08999 * 109.47196 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46903 * 300.00065 * 3 2 1 31 31 H 1.09004 * 109.46750 * 59.99911 * 3 2 1 32 32 H 1.09001 * 109.47030 * 305.00336 * 4 2 1 33 33 H 1.08998 * 109.46968 * 185.00057 * 4 2 1 34 34 H 1.09007 * 109.46536 * 24.33695 * 6 5 4 35 35 H 1.08998 * 109.47408 * 144.33767 * 6 5 4 36 36 H 0.97005 * 119.99820 * 180.02562 * 10 9 7 37 37 H 1.07997 * 128.07742 * 359.97438 * 18 17 15 38 38 H 1.08999 * 109.47164 * 204.71346 * 20 19 18 39 39 H 1.08999 * 109.46936 * 299.99577 * 21 20 19 40 40 H 1.09002 * 109.46571 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47551 * 60.00021 * 21 20 19 42 42 H 1.08997 * 109.46661 * 179.97438 * 22 20 19 43 43 H 1.08999 * 109.47043 * 299.99787 * 22 20 19 44 44 H 1.08998 * 109.47144 * 60.00070 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 0.4291 -2.5849 1.8578 7 6 0.7710 -3.1222 3.2236 8 1 1.7970 -3.1267 3.5608 9 6 -0.2260 -3.6088 4.0423 10 7 0.0725 -4.0781 5.2341 11 14 -2.0004 -3.6016 3.4588 12 1 -2.2961 -4.8767 2.7576 13 1 -2.9053 -3.4578 4.6275 14 1 -2.2106 -2.4642 2.5274 15 6 2.4215 -3.0155 0.5228 16 8 3.4794 -2.6582 0.0417 17 6 1.9797 -4.4152 0.3756 18 6 2.5895 -5.3975 -0.3561 19 6 1.7648 -6.5273 -0.1588 20 6 1.9658 -7.9021 -0.7426 21 6 2.9269 -8.6969 0.1437 22 6 2.5540 -7.7778 -2.1495 23 7 0.8008 -6.1505 0.6298 24 8 0.8982 -4.9859 0.9391 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6055 -0.2618 2.1370 33 1 3.1264 -0.6443 1.2951 34 1 -0.2604 -1.7468 1.9592 35 1 -0.0389 -3.3707 1.2649 36 1 -0.6289 -4.4208 5.8100 37 1 3.4898 -5.3252 -0.9483 38 1 1.0074 -8.4187 -0.7937 39 1 3.8853 -8.1802 0.1949 40 1 3.0726 -9.6911 -0.2787 41 1 2.5078 -8.7854 1.1460 42 1 2.6997 -8.7721 -2.5714 43 1 1.8693 -7.2115 -2.7808 44 1 3.5124 -7.2612 -2.0983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733776183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:17 Heat of formation + Delta-G solvation = 11.348303 kcal Electronic energy + Delta-G solvation = -24927.382653 eV Core-core repulsion = 21461.981402 eV Total energy + Delta-G solvation = -3465.401251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.45597 -39.39005 -36.51228 -36.24148 -34.20236 -32.33632 -32.07435 -31.22899 -28.31293 -27.24922 -26.94591 -26.20455 -23.75035 -23.28223 -22.16963 -21.04713 -20.08734 -18.70767 -17.34885 -16.96872 -16.74583 -15.90112 -15.86474 -14.89882 -14.71012 -14.34821 -14.25090 -13.93306 -13.52098 -13.34384 -13.25632 -13.05718 -12.64662 -12.36885 -12.23672 -12.10649 -11.90905 -11.59063 -11.45555 -11.38463 -11.29379 -11.18032 -10.99593 -10.71889 -10.63397 -10.61091 -10.33812 -10.23047 -9.73101 -9.69512 -9.55100 -9.20817 -8.65016 -7.91113 -6.16167 -4.17710 1.37631 2.47562 3.16852 3.27150 3.30461 3.35025 3.56630 3.79273 4.26142 4.33685 4.68488 5.01486 5.07275 5.15062 5.15623 5.16938 5.22186 5.29747 5.37721 5.55097 5.57327 5.66806 5.76432 5.76983 5.82935 5.85592 5.87185 5.95160 6.03017 6.12021 6.19505 6.20553 6.23073 6.26976 6.30826 6.33207 6.54011 6.55569 6.72615 7.17143 7.45452 7.87763 8.33642 8.49959 8.71771 8.87840 9.43040 10.96595 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.006775 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.110292 B = 4132.069470 C = 5866.051672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.141 4.141 4 C 0.124 3.876 5 N -0.571 5.571 6 C 0.200 3.800 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.084 3.916 10 N -0.890 5.890 11 Si 0.864 3.136 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.264 1.264 15 C 0.601 3.399 16 O -0.544 6.544 17 C -0.058 4.058 18 C -0.171 4.171 19 C 0.002 3.998 20 C -0.014 4.014 21 C -0.144 4.144 22 C -0.143 4.143 23 N -0.355 5.355 24 O 0.159 5.841 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.266 0.734 37 H 0.174 0.826 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 0.054 -13.023 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.001 3.999 5 N -0.299 5.299 6 C 0.079 3.921 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.120 4.120 10 N -0.527 5.527 11 Si 0.691 3.309 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.188 1.188 15 C 0.387 3.613 16 O -0.424 6.424 17 C -0.124 4.124 18 C -0.194 4.194 19 C -0.155 4.155 20 C -0.033 4.033 21 C -0.202 4.202 22 C -0.201 4.201 23 N -0.052 5.052 24 O 0.084 5.916 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.191 0.809 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.795 -0.468 -12.546 12.683 hybrid contribution -0.383 0.042 -0.314 0.497 sum 1.412 -0.427 -12.860 12.945 Atomic orbital electron populations 1.21909 0.95147 1.02268 1.01273 1.21519 0.96264 0.96222 0.99226 1.21743 1.01012 0.95549 1.01613 1.21525 1.00785 0.79813 0.97748 1.47869 1.25410 1.07501 1.49157 1.20190 0.82109 0.95976 0.93847 1.21234 0.96599 1.41964 0.97800 0.90480 1.24763 0.98654 0.94067 0.94499 1.69881 1.33473 1.40678 1.08703 0.87016 0.85362 0.79653 0.78894 1.19320 1.20960 1.18841 1.16604 0.83717 0.81709 0.79273 1.90760 1.22397 1.77809 1.51392 1.24178 0.91689 0.96782 0.99768 1.22590 1.02532 0.90680 1.03591 1.23442 0.93739 0.98386 0.99935 1.19457 1.00510 0.88482 0.94837 1.21828 0.99224 0.99352 0.99775 1.21831 1.01348 1.02093 0.94830 1.73738 1.22396 0.95487 1.13612 1.85444 1.37282 1.15981 1.52864 0.92466 0.93255 0.92211 0.91070 0.92581 0.92823 0.92527 0.89541 0.90392 0.93753 0.94343 0.92410 0.80873 0.89601 0.92127 0.91861 0.92165 0.91828 0.92327 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.34 37.16 0.31 -1.77 16 2 C -0.11 -1.61 3.09 -90.61 -0.28 -1.89 16 3 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 4 C 0.12 2.11 4.81 -4.04 -0.02 2.09 16 5 N -0.57 -11.55 2.21 -176.30 -0.39 -11.94 16 6 C 0.20 4.45 2.75 -5.19 -0.01 4.44 16 7 C -0.54 -14.38 9.23 -34.44 -0.32 -14.69 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 10 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 11 Si 0.86 20.55 27.47 -169.99 -4.67 15.88 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 15 C 0.60 12.52 7.59 -12.48 -0.09 12.43 16 16 O -0.54 -11.67 16.55 5.29 0.09 -11.59 16 17 C -0.06 -1.17 6.90 -36.31 -0.25 -1.42 16 18 C -0.17 -2.96 10.14 -38.94 -0.39 -3.35 16 19 C 0.00 0.04 6.20 -82.16 -0.51 -0.47 16 20 C -0.01 -0.17 3.38 -91.77 -0.31 -0.48 16 21 C -0.14 -1.68 9.18 37.16 0.34 -1.34 16 22 C -0.14 -1.44 8.81 37.16 0.33 -1.11 16 23 N -0.35 -7.35 12.04 33.52 0.40 -6.94 16 24 O 0.16 3.52 7.44 15.55 0.12 3.63 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.93 6.38 -51.93 -0.33 0.60 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.44 8.03 -51.93 -0.42 1.03 16 33 H 0.08 1.34 7.52 -51.93 -0.39 0.95 16 34 H 0.04 0.95 5.87 -51.92 -0.30 0.65 16 35 H 0.04 0.88 4.73 -51.93 -0.25 0.64 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.17 2.54 7.66 -52.49 -0.40 2.13 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.60 7.49 -51.93 -0.39 0.21 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -30.64 357.26 -6.41 -37.04 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.14 Total: 0.83 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.97 Total: -6.65 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.79 Total: -44.54 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.20 Total: -7.95 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.64 -6.41 -37.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733776183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.392 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds