Wall clock time and date at job start Tue Mar 31 2020 07:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47088 * 2 1 4 4 C 1.53005 * 109.47432 * 119.99960 * 2 1 3 5 5 N 1.46492 * 109.46757 * 64.99860 * 4 2 1 6 6 C 1.46504 * 120.00566 * 264.92128 * 5 4 2 7 7 C 1.50697 * 109.47375 * 264.34570 * 6 5 4 8 8 H 1.08001 * 119.99751 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00114 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99809 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99861 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47140 * 90.00234 * 11 9 7 13 13 H 1.48504 * 109.47076 * 210.00703 * 11 9 7 14 14 H 1.48502 * 109.47330 * 330.00170 * 11 9 7 15 15 C 1.34776 * 120.00106 * 84.92627 * 5 4 2 16 16 O 1.21587 * 119.99669 * 4.67813 * 15 5 4 17 17 C 1.47513 * 120.00373 * 184.68019 * 15 5 4 18 18 C 1.36829 * 126.94506 * 174.48086 * 17 15 5 19 19 C 1.41263 * 103.84331 * 180.12301 * 18 17 15 20 20 C 1.50705 * 126.70188 * 179.85114 * 19 18 17 21 21 C 1.53003 * 109.46534 * 84.71908 * 20 19 18 22 22 C 1.53000 * 109.47158 * 324.71880 * 20 19 18 23 23 N 1.30126 * 106.59136 * 359.59522 * 19 18 17 24 24 O 1.20888 * 111.98394 * 0.26050 * 23 19 18 25 25 H 1.09006 * 109.46921 * 299.99896 * 1 2 3 26 26 H 1.08998 * 109.46902 * 59.99834 * 1 2 3 27 27 H 1.08997 * 109.46512 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47237 * 240.00426 * 2 1 3 29 29 H 1.08999 * 109.47196 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46903 * 300.00065 * 3 2 1 31 31 H 1.09004 * 109.46750 * 59.99911 * 3 2 1 32 32 H 1.09001 * 109.47030 * 305.00336 * 4 2 1 33 33 H 1.08998 * 109.46968 * 185.00057 * 4 2 1 34 34 H 1.09007 * 109.46536 * 24.33695 * 6 5 4 35 35 H 1.08998 * 109.47408 * 144.33767 * 6 5 4 36 36 H 0.97005 * 119.99820 * 180.02562 * 10 9 7 37 37 H 1.07997 * 128.07742 * 359.97438 * 18 17 15 38 38 H 1.08999 * 109.47164 * 204.71346 * 20 19 18 39 39 H 1.08999 * 109.46936 * 299.99577 * 21 20 19 40 40 H 1.09002 * 109.46571 * 180.02562 * 21 20 19 41 41 H 1.08996 * 109.47551 * 60.00021 * 21 20 19 42 42 H 1.08997 * 109.46661 * 179.97438 * 22 20 19 43 43 H 1.08999 * 109.47043 * 299.99787 * 22 20 19 44 44 H 1.08998 * 109.47144 * 60.00070 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 0.4291 -2.5849 1.8578 7 6 0.7710 -3.1222 3.2236 8 1 1.7970 -3.1267 3.5608 9 6 -0.2260 -3.6088 4.0423 10 7 0.0725 -4.0781 5.2341 11 14 -2.0004 -3.6016 3.4588 12 1 -2.2961 -4.8767 2.7576 13 1 -2.9053 -3.4578 4.6275 14 1 -2.2106 -2.4642 2.5274 15 6 2.4215 -3.0155 0.5228 16 8 3.4794 -2.6582 0.0417 17 6 1.9797 -4.4152 0.3756 18 6 2.5895 -5.3975 -0.3561 19 6 1.7648 -6.5273 -0.1588 20 6 1.9658 -7.9021 -0.7426 21 6 2.9269 -8.6969 0.1437 22 6 2.5540 -7.7778 -2.1495 23 7 0.8008 -6.1505 0.6298 24 8 0.8982 -4.9859 0.9391 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6055 -0.2618 2.1370 33 1 3.1264 -0.6443 1.2951 34 1 -0.2604 -1.7468 1.9592 35 1 -0.0389 -3.3707 1.2649 36 1 -0.6289 -4.4208 5.8100 37 1 3.4898 -5.3252 -0.9483 38 1 1.0074 -8.4187 -0.7937 39 1 3.8853 -8.1802 0.1949 40 1 3.0726 -9.6911 -0.2787 41 1 2.5078 -8.7854 1.1460 42 1 2.6997 -8.7721 -2.5714 43 1 1.8693 -7.2115 -2.7808 44 1 3.5124 -7.2612 -2.0983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733776183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:17 Heat of formation + Delta-G solvation = -6.346245 kcal Electronic energy + Delta-G solvation = -24928.149946 eV Core-core repulsion = 21461.981402 eV Total energy + Delta-G solvation = -3466.168544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.94198 -40.98711 -37.89647 -37.45663 -35.74949 -34.32306 -33.40726 -32.67697 -30.17405 -28.13403 -27.99361 -27.62740 -25.11832 -24.92960 -23.82394 -22.39569 -21.28727 -20.07923 -19.24352 -18.62320 -18.41481 -17.43213 -17.34574 -16.41620 -16.17214 -15.88888 -15.35528 -15.21760 -14.94656 -14.72793 -14.66015 -14.32766 -14.14110 -13.79536 -13.61905 -13.21723 -13.04808 -12.98771 -12.72466 -12.70346 -12.52882 -12.40882 -12.25452 -12.19407 -12.01749 -11.80774 -11.79437 -11.69036 -11.56648 -11.29176 -11.07280 -10.79610 -10.73201 -9.57176 -8.31487 -6.37050 -0.18506 1.08774 1.34009 1.40135 1.44178 1.66277 1.96947 2.24385 2.32743 3.02911 3.05174 3.31970 3.76707 3.95947 3.98627 4.01710 4.13024 4.14347 4.17186 4.27862 4.47731 4.55048 4.62733 4.70749 4.77957 4.80734 4.86276 4.87995 4.93820 4.95859 4.97071 5.03107 5.06565 5.15001 5.23917 5.30165 5.36251 5.37681 5.39804 5.46724 5.60370 6.07197 6.34823 6.64242 6.86987 7.18503 7.27757 8.85102 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.006775 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.110292 B = 4132.069470 C = 5866.051672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.136 4.136 4 C 0.117 3.883 5 N -0.574 5.574 6 C 0.213 3.787 7 C -0.531 4.531 8 H 0.029 0.971 9 C 0.029 3.971 10 N -0.941 5.941 11 Si 0.925 3.075 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.231 1.231 15 C 0.597 3.403 16 O -0.555 6.555 17 C -0.087 4.087 18 C -0.154 4.154 19 C 0.019 3.981 20 C -0.017 4.017 21 C -0.141 4.141 22 C -0.138 4.138 23 N -0.386 5.386 24 O 0.120 5.880 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.267 0.733 37 H 0.202 0.798 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 0.254 -15.579 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.193 4.193 4 C -0.005 4.005 5 N -0.302 5.302 6 C 0.091 3.909 7 C -0.569 4.569 8 H 0.048 0.952 9 C -0.170 4.170 10 N -0.581 5.581 11 Si 0.747 3.253 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.154 1.154 15 C 0.383 3.617 16 O -0.436 6.436 17 C -0.153 4.153 18 C -0.176 4.176 19 C -0.139 4.139 20 C -0.036 4.036 21 C -0.199 4.199 22 C -0.196 4.196 23 N -0.090 5.090 24 O 0.052 5.948 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.219 0.781 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.349 -0.192 -15.110 15.171 hybrid contribution -0.089 -0.107 0.467 0.487 sum 1.260 -0.299 -14.643 14.700 Atomic orbital electron populations 1.21902 0.94564 1.01363 1.02673 1.21444 0.96692 0.97440 0.96854 1.21710 1.01102 0.93574 1.02960 1.21777 1.00641 0.78486 0.99555 1.47908 1.24785 1.08778 1.48694 1.19924 0.83181 0.96334 0.91440 1.21351 0.94334 1.41499 0.99764 0.95232 1.25593 1.03333 0.93674 0.94398 1.70031 1.35023 1.42609 1.10386 0.86048 0.79659 0.80514 0.79038 1.19806 1.20543 1.15369 1.16756 0.83617 0.82095 0.79185 1.90733 1.22645 1.78174 1.52063 1.24380 0.92505 0.97232 1.01198 1.23011 1.02666 0.89703 1.02215 1.24228 0.91962 1.00025 0.97717 1.19759 1.01386 0.85955 0.96498 1.21835 0.98595 1.01002 0.98511 1.21834 1.01216 1.03926 0.92627 1.73725 1.24421 0.95325 1.15532 1.85378 1.38357 1.16731 1.54357 0.91949 0.90997 0.94202 0.92259 0.92490 0.90978 0.91658 0.89406 0.90957 0.92044 0.94113 0.92384 0.78114 0.89249 0.92030 0.88606 0.94500 0.89076 0.92494 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 8.34 71.98 0.60 -3.21 16 2 C -0.10 -2.85 3.09 -10.79 -0.03 -2.89 16 3 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 4 C 0.12 3.98 4.81 86.38 0.42 4.39 16 5 N -0.57 -23.51 2.21 -829.95 -1.84 -25.34 16 6 C 0.21 9.56 2.75 85.63 0.24 9.79 16 7 C -0.53 -29.37 9.23 25.60 0.24 -29.14 16 8 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 9 C 0.03 1.65 5.47 84.66 0.46 2.11 16 10 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 11 Si 0.92 42.46 27.47 68.60 1.88 44.35 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 14 H -0.23 -9.29 6.54 99.48 0.65 -8.64 16 15 C 0.60 25.26 7.59 86.69 0.66 25.92 16 16 O -0.56 -23.94 16.55 -3.99 -0.07 -24.01 16 17 C -0.09 -3.60 6.90 24.39 0.17 -3.43 16 18 C -0.15 -5.19 10.14 22.68 0.23 -4.96 16 19 C 0.02 0.62 6.20 43.56 0.27 0.89 16 20 C -0.02 -0.39 3.38 -11.54 -0.04 -0.43 16 21 C -0.14 -3.03 9.18 71.98 0.66 -2.37 16 22 C -0.14 -2.31 8.81 71.98 0.63 -1.68 16 23 N -0.39 -16.21 12.04 -48.86 -0.59 -16.80 16 24 O 0.12 5.45 7.44 65.83 0.49 5.94 16 25 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.04 1.18 6.38 -2.39 -0.02 1.16 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 2.92 8.03 -2.39 -0.02 2.90 16 33 H 0.07 2.51 7.52 -2.39 -0.02 2.49 16 34 H 0.06 2.56 5.87 -2.38 -0.01 2.55 16 35 H 0.04 1.88 4.73 -2.39 -0.01 1.87 16 36 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 37 H 0.20 5.46 7.66 -2.91 -0.02 5.43 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 1.06 7.49 -2.39 -0.02 1.05 16 Total: -1.00 -69.43 357.26 6.26 -63.17 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.92 Total: 17.49 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 5.16 Total: -7.14 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -2.13 Total: -99.80 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.42 Total: -18.06 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.35 kcal Total: -69.43 6.26 -63.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733776183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.823 kcal (2) G-P(sol) polarization free energy of solvation -69.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds