Wall clock time and date at job start Tue Mar 31 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47040 * 120.00120 * 2 1 3 5 5 C 1.53006 * 110.54245 * 302.84610 * 4 2 1 6 6 C 1.54228 * 110.60656 * 180.02562 * 4 2 1 7 7 C 1.51312 * 103.55762 * 241.32863 * 6 4 2 8 8 O 1.21229 * 125.39861 * 179.97438 * 7 6 4 9 9 N 1.33882 * 109.20465 * 0.23750 * 7 6 4 10 10 C 1.46493 * 122.76076 * 179.75679 * 9 7 6 11 11 N 1.46504 * 109.47233 * 90.03153 * 10 9 7 12 12 C 1.36929 * 119.99957 * 89.99440 * 11 10 9 13 13 H 1.07996 * 120.00191 * 304.36366 * 12 11 10 14 14 C 1.38817 * 119.99840 * 124.36359 * 12 11 10 15 15 N 1.31618 * 119.99853 * 164.93375 * 14 12 11 16 16 Si 1.86800 * 120.00069 * 344.93732 * 14 12 11 17 17 H 1.48503 * 109.47330 * 92.11918 * 16 14 12 18 18 H 1.48499 * 109.47369 * 212.12372 * 16 14 12 19 19 H 1.48510 * 109.46934 * 332.12242 * 16 14 12 20 20 C 1.46498 * 119.99528 * 270.00002 * 11 10 9 21 21 C 1.53001 * 117.49911 * 183.04985 * 20 11 10 22 22 C 1.52992 * 60.00055 * 252.50776 * 21 20 11 23 23 C 1.33872 * 114.46993 * 359.56968 * 9 7 6 24 24 O 1.21234 * 125.39036 * 180.16861 * 23 9 7 25 25 H 1.09000 * 109.47348 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47122 * 299.99967 * 1 2 3 27 27 H 1.08997 * 109.47111 * 59.99626 * 1 2 3 28 28 H 1.09000 * 109.47122 * 240.00033 * 2 1 3 29 29 H 1.09010 * 109.47448 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47402 * 300.00196 * 3 2 1 31 31 H 1.09000 * 109.47064 * 59.99997 * 3 2 1 32 32 H 1.08996 * 109.46829 * 297.85534 * 5 4 2 33 33 H 1.08998 * 109.46461 * 57.85218 * 5 4 2 34 34 H 1.08994 * 109.46942 * 177.85221 * 5 4 2 35 35 H 1.08999 * 110.61146 * 122.80790 * 6 4 2 36 36 H 1.09008 * 110.73997 * 359.90578 * 6 4 2 37 37 H 1.09007 * 109.47242 * 210.02953 * 10 9 7 38 38 H 1.09000 * 109.47608 * 330.02532 * 10 9 7 39 39 H 0.97003 * 119.99719 * 180.02562 * 15 14 12 40 40 H 1.09006 * 115.55326 * 328.75267 * 20 11 10 41 41 H 1.09006 * 117.49700 * 359.97438 * 21 20 11 42 42 H 1.08997 * 117.50454 * 145.01679 * 21 20 11 43 43 H 1.08998 * 117.50136 * 252.50812 * 22 21 20 44 44 H 1.09004 * 117.50103 * 107.48565 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.4862 -0.0615 2.5138 6 6 3.5819 -0.7360 1.2760 7 6 3.9231 -2.2099 1.2477 8 8 5.0440 -2.6715 1.2563 9 7 2.7910 -2.9233 1.2059 10 6 2.7777 -4.3876 1.1649 11 7 2.7458 -4.9141 2.5317 12 6 1.5453 -5.1487 3.1471 13 1 0.8195 -4.3540 3.2357 14 6 1.2613 -6.4082 3.6572 15 7 0.2604 -6.5677 4.4969 16 14 2.2997 -7.8765 3.1519 17 1 3.4091 -8.0558 4.1227 18 1 1.4549 -9.0977 3.1345 19 1 2.8606 -7.6432 1.7968 20 6 3.9983 -5.1895 3.2399 21 6 3.8993 -5.8051 4.6371 22 6 4.3135 -4.3414 4.4737 23 6 1.6720 -2.1884 1.2087 24 8 0.5428 -2.6285 1.1782 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.8384 0.9685 2.5701 33 1 0.3968 -0.0717 2.4816 34 1 1.8290 -0.6112 3.3903 35 1 3.9542 -0.2736 2.1901 36 1 3.9881 -0.2314 0.3993 37 1 1.8949 -4.7280 0.6237 38 1 3.6744 -4.7451 0.6587 39 1 0.0621 -7.4477 4.8536 40 1 4.8355 -5.4962 2.6127 41 1 2.9021 -6.0047 5.0296 42 1 4.6711 -6.5170 4.9294 43 1 5.3580 -4.0903 4.6584 44 1 3.5890 -3.5784 4.7584 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735069892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:38 Heat of formation + Delta-G solvation = -15.904378 kcal Electronic energy + Delta-G solvation = -25839.074057 eV Core-core repulsion = 22372.491041 eV Total energy + Delta-G solvation = -3466.583016 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69385 -38.26607 -37.43960 -36.65434 -35.09488 -32.94712 -31.99529 -30.65831 -28.35595 -27.20006 -25.73450 -24.67389 -23.41731 -22.16984 -21.58835 -20.13113 -19.69396 -18.55879 -16.98154 -16.59941 -16.38076 -16.01745 -15.28231 -14.83919 -14.75510 -14.55616 -14.00824 -13.87667 -13.66736 -13.41752 -13.05044 -12.86419 -12.69956 -12.41046 -12.12111 -12.07944 -11.97028 -11.86752 -11.53239 -11.29357 -11.17463 -10.83703 -10.80674 -10.64341 -10.55167 -10.44061 -10.02589 -9.81111 -9.53880 -9.43367 -9.26260 -9.10888 -8.44993 -6.76181 -6.07754 -3.80091 2.02314 3.08238 3.28280 3.37078 3.45137 3.51475 4.20764 4.43486 4.46925 4.52810 4.66824 4.81509 4.85356 4.94737 5.13866 5.22488 5.27729 5.36039 5.49059 5.59297 5.61298 5.73306 5.78353 5.78990 5.86271 5.86929 5.91932 5.99471 6.03263 6.07632 6.09350 6.10578 6.31706 6.44175 6.46612 6.49168 6.56444 6.95713 7.26272 7.45677 7.87128 8.02603 8.35504 8.44201 8.88135 9.54777 9.96187 11.02041 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021452 B = 0.005836 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.945494 B = 4796.849290 C = 5367.897996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.072 4.072 3 C -0.148 4.148 4 C -0.095 4.095 5 C -0.133 4.133 6 C -0.156 4.156 7 C 0.528 3.472 8 O -0.495 6.495 9 N -0.576 5.576 10 C 0.338 3.662 11 N -0.557 5.557 12 C -0.292 4.292 13 H 0.078 0.922 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.884 3.116 17 H -0.269 1.269 18 H -0.302 1.302 19 H -0.271 1.271 20 C 0.103 3.897 21 C -0.194 4.194 22 C -0.205 4.205 23 C 0.535 3.465 24 O -0.462 6.462 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.266 0.734 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 14.049 -7.667 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.091 4.091 3 C -0.205 4.205 4 C -0.098 4.098 5 C -0.191 4.191 6 C -0.196 4.196 7 C 0.316 3.684 8 O -0.368 6.368 9 N -0.323 5.323 10 C 0.132 3.868 11 N -0.276 5.276 12 C -0.421 4.421 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.712 3.288 17 H -0.195 1.195 18 H -0.230 1.230 19 H -0.195 1.195 20 C -0.003 4.003 21 C -0.231 4.231 22 C -0.245 4.245 23 C 0.321 3.679 24 O -0.331 6.331 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.094 13.309 -7.577 16.140 hybrid contribution 0.558 -0.876 0.060 1.041 sum 5.652 12.433 -7.517 15.590 Atomic orbital electron populations 1.22012 0.94009 1.03905 1.01539 1.20955 0.97035 0.95959 0.95172 1.21929 1.01062 0.95327 1.02225 1.21537 0.94942 0.94220 0.99140 1.21795 1.02372 1.00225 0.94665 1.22730 0.95380 0.95340 1.06175 1.20696 0.84381 0.89648 0.73628 1.90702 1.22049 1.77544 1.46499 1.48388 1.08124 1.11925 1.63817 1.21335 1.01693 0.75574 0.88197 1.44091 1.01961 1.71249 1.10307 1.18633 0.92590 0.95470 1.35374 0.90469 1.25788 0.95038 0.97950 0.95372 1.69861 1.30085 1.23706 1.29173 0.86815 0.80080 0.81768 0.80126 1.19451 1.22984 1.19536 1.21432 0.89953 1.01782 0.87169 1.23501 1.03732 0.94929 1.00979 1.23240 0.99534 0.94621 1.07130 1.20503 0.84677 0.88501 0.74206 1.90738 1.20738 1.77720 1.43935 0.90633 0.92132 0.92870 0.90991 0.92360 0.92370 0.92003 0.91168 0.90804 0.91864 0.86918 0.86920 0.88756 0.90778 0.92388 0.89050 0.86181 0.90517 0.90891 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.55 37.16 0.32 -1.44 16 2 C -0.07 -0.75 2.17 -90.62 -0.20 -0.94 16 3 C -0.15 -1.13 8.67 37.16 0.32 -0.81 16 4 C -0.09 -1.19 0.49 -154.72 -0.08 -1.26 16 5 C -0.13 -1.57 7.72 37.16 0.29 -1.28 16 6 C -0.16 -1.82 5.77 -26.94 -0.16 -1.98 16 7 C 0.53 8.69 8.08 -11.08 -0.09 8.60 16 8 O -0.49 -9.36 17.48 5.60 0.10 -9.26 16 9 N -0.58 -10.47 2.79 -118.82 -0.33 -10.80 16 10 C 0.34 6.99 6.12 -63.75 -0.39 6.60 16 11 N -0.56 -13.17 2.29 -169.34 -0.39 -13.56 16 12 C -0.29 -8.04 9.17 -15.06 -0.14 -8.18 16 13 H 0.08 2.41 7.97 -52.49 -0.42 1.99 16 14 C 0.06 1.74 3.75 -17.43 -0.07 1.68 16 15 N -0.89 -26.51 13.97 55.49 0.78 -25.74 16 16 Si 0.88 21.93 24.86 -169.99 -4.23 17.70 16 17 H -0.27 -6.37 5.81 56.52 0.33 -6.04 16 18 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 20 C 0.10 2.30 5.16 -67.93 -0.35 1.95 16 21 C -0.19 -4.32 6.68 -26.73 -0.18 -4.50 16 22 C -0.20 -4.28 10.36 -26.74 -0.28 -4.55 16 23 C 0.53 9.37 6.61 -11.09 -0.07 9.30 16 24 O -0.46 -9.69 15.37 5.60 0.09 -9.60 16 25 H 0.07 1.06 6.10 -51.93 -0.32 0.75 16 26 H 0.06 0.64 6.42 -51.93 -0.33 0.31 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.40 6.53 -51.92 -0.34 0.06 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.45 6.64 -51.93 -0.34 0.10 16 32 H 0.07 0.62 6.72 -51.93 -0.35 0.27 16 33 H 0.07 0.92 6.37 -51.93 -0.33 0.59 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.11 1.17 7.74 -51.93 -0.40 0.77 16 36 H 0.11 1.03 6.46 -51.92 -0.34 0.70 16 37 H 0.09 2.01 7.73 -51.92 -0.40 1.61 16 38 H 0.07 1.42 7.76 -51.93 -0.40 1.02 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 41 H 0.12 3.08 5.09 -51.93 -0.26 2.82 16 42 H 0.08 1.56 7.86 -51.93 -0.41 1.16 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 340.75 15.07 5.14 5.14 Total: -1.00 -31.73 340.75 -6.73 -38.46 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.81 Total: 4.49 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.06 Total: 3.17 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.06 Total: -50.10 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.18 Total: -18.87 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.23 Total: 17.70 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.73 -6.73 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735069892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.558 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds