Wall clock time and date at job start Tue Mar 31 2020 06:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47040 * 120.00120 * 2 1 3 5 5 C 1.53006 * 110.54245 * 302.84610 * 4 2 1 6 6 C 1.54228 * 110.60656 * 180.02562 * 4 2 1 7 7 C 1.51312 * 103.55762 * 241.32863 * 6 4 2 8 8 O 1.21229 * 125.39861 * 179.97438 * 7 6 4 9 9 N 1.33882 * 109.20465 * 0.23750 * 7 6 4 10 10 C 1.46493 * 122.76076 * 179.75679 * 9 7 6 11 11 N 1.46504 * 109.47233 * 90.03153 * 10 9 7 12 12 C 1.36929 * 119.99957 * 89.99440 * 11 10 9 13 13 H 1.07996 * 120.00191 * 304.36366 * 12 11 10 14 14 C 1.38817 * 119.99840 * 124.36359 * 12 11 10 15 15 N 1.31618 * 119.99853 * 164.93375 * 14 12 11 16 16 Si 1.86800 * 120.00069 * 344.93732 * 14 12 11 17 17 H 1.48503 * 109.47330 * 92.11918 * 16 14 12 18 18 H 1.48499 * 109.47369 * 212.12372 * 16 14 12 19 19 H 1.48510 * 109.46934 * 332.12242 * 16 14 12 20 20 C 1.46498 * 119.99528 * 270.00002 * 11 10 9 21 21 C 1.53001 * 117.49911 * 183.04985 * 20 11 10 22 22 C 1.52992 * 60.00055 * 252.50776 * 21 20 11 23 23 C 1.33872 * 114.46993 * 359.56968 * 9 7 6 24 24 O 1.21234 * 125.39036 * 180.16861 * 23 9 7 25 25 H 1.09000 * 109.47348 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47122 * 299.99967 * 1 2 3 27 27 H 1.08997 * 109.47111 * 59.99626 * 1 2 3 28 28 H 1.09000 * 109.47122 * 240.00033 * 2 1 3 29 29 H 1.09010 * 109.47448 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47402 * 300.00196 * 3 2 1 31 31 H 1.09000 * 109.47064 * 59.99997 * 3 2 1 32 32 H 1.08996 * 109.46829 * 297.85534 * 5 4 2 33 33 H 1.08998 * 109.46461 * 57.85218 * 5 4 2 34 34 H 1.08994 * 109.46942 * 177.85221 * 5 4 2 35 35 H 1.08999 * 110.61146 * 122.80790 * 6 4 2 36 36 H 1.09008 * 110.73997 * 359.90578 * 6 4 2 37 37 H 1.09007 * 109.47242 * 210.02953 * 10 9 7 38 38 H 1.09000 * 109.47608 * 330.02532 * 10 9 7 39 39 H 0.97003 * 119.99719 * 180.02562 * 15 14 12 40 40 H 1.09006 * 115.55326 * 328.75267 * 20 11 10 41 41 H 1.09006 * 117.49700 * 359.97438 * 21 20 11 42 42 H 1.08997 * 117.50454 * 145.01679 * 21 20 11 43 43 H 1.08998 * 117.50136 * 252.50812 * 22 21 20 44 44 H 1.09004 * 117.50103 * 107.48565 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.4862 -0.0615 2.5138 6 6 3.5819 -0.7360 1.2760 7 6 3.9231 -2.2099 1.2477 8 8 5.0440 -2.6715 1.2563 9 7 2.7910 -2.9233 1.2059 10 6 2.7777 -4.3876 1.1649 11 7 2.7458 -4.9141 2.5317 12 6 1.5453 -5.1487 3.1471 13 1 0.8195 -4.3540 3.2357 14 6 1.2613 -6.4082 3.6572 15 7 0.2604 -6.5677 4.4969 16 14 2.2997 -7.8765 3.1519 17 1 3.4091 -8.0558 4.1227 18 1 1.4549 -9.0977 3.1345 19 1 2.8606 -7.6432 1.7968 20 6 3.9983 -5.1895 3.2399 21 6 3.8993 -5.8051 4.6371 22 6 4.3135 -4.3414 4.4737 23 6 1.6720 -2.1884 1.2087 24 8 0.5428 -2.6285 1.1782 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.8384 0.9685 2.5701 33 1 0.3968 -0.0717 2.4816 34 1 1.8290 -0.6112 3.3903 35 1 3.9542 -0.2736 2.1901 36 1 3.9881 -0.2314 0.3993 37 1 1.8949 -4.7280 0.6237 38 1 3.6744 -4.7451 0.6587 39 1 0.0621 -7.4477 4.8536 40 1 4.8355 -5.4962 2.6127 41 1 2.9021 -6.0047 5.0296 42 1 4.6711 -6.5170 4.9294 43 1 5.3580 -4.0903 4.6584 44 1 3.5890 -3.5784 4.7584 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735069892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:37 Heat of formation + Delta-G solvation = -35.994316 kcal Electronic energy + Delta-G solvation = -25839.945222 eV Core-core repulsion = 22372.491041 eV Total energy + Delta-G solvation = -3467.454181 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.99878 -39.64559 -39.14432 -37.89224 -36.56094 -34.75749 -33.74659 -32.02043 -29.41275 -28.20244 -27.28336 -25.94194 -25.16597 -23.40580 -23.27415 -21.87736 -21.02879 -19.76008 -18.89638 -18.15875 -17.79089 -17.23600 -16.75586 -16.64853 -16.05724 -15.87750 -15.49576 -15.25937 -15.11121 -14.95121 -14.52626 -14.08781 -13.87940 -13.76225 -13.63432 -13.28664 -13.17203 -13.05017 -12.79633 -12.69542 -12.47761 -12.37248 -12.24334 -12.07983 -11.90684 -11.73046 -11.47267 -11.39608 -11.20471 -11.05095 -10.86139 -10.61848 -10.47950 -8.69695 -8.25235 -5.98903 0.68144 1.37530 1.40210 1.52328 1.71656 1.96413 2.39361 2.92470 3.02973 3.13214 3.28118 3.32016 3.49987 3.71095 4.01826 4.09735 4.14280 4.26553 4.34288 4.35014 4.40258 4.43200 4.54088 4.64284 4.66440 4.80341 4.82397 4.86673 4.88973 4.91279 4.93416 5.05986 5.15170 5.19092 5.23846 5.29275 5.44958 5.54912 5.58280 5.87642 6.08913 6.21577 6.54480 6.89183 6.97640 7.40671 7.88746 8.88009 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021452 B = 0.005836 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.945494 B = 4796.849290 C = 5367.897996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.068 4.068 3 C -0.143 4.143 4 C -0.083 4.083 5 C -0.132 4.132 6 C -0.139 4.139 7 C 0.523 3.477 8 O -0.517 6.517 9 N -0.586 5.586 10 C 0.340 3.660 11 N -0.569 5.569 12 C -0.278 4.278 13 H 0.022 0.978 14 C 0.018 3.982 15 N -0.939 5.939 16 Si 0.945 3.055 17 H -0.246 1.246 18 H -0.310 1.310 19 H -0.263 1.263 20 C 0.095 3.905 21 C -0.201 4.201 22 C -0.186 4.186 23 C 0.522 3.478 24 O -0.510 6.510 25 H 0.036 0.964 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.039 0.961 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.267 0.733 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 16.221 -8.703 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.087 4.087 3 C -0.200 4.200 4 C -0.086 4.086 5 C -0.189 4.189 6 C -0.178 4.178 7 C 0.314 3.686 8 O -0.392 6.392 9 N -0.331 5.331 10 C 0.133 3.867 11 N -0.290 5.290 12 C -0.407 4.407 13 H 0.040 0.960 14 C -0.182 4.182 15 N -0.579 5.579 16 Si 0.770 3.230 17 H -0.170 1.170 18 H -0.238 1.238 19 H -0.188 1.188 20 C -0.011 4.011 21 C -0.239 4.239 22 C -0.226 4.226 23 C 0.312 3.688 24 O -0.382 6.382 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.156 0.844 36 H 0.169 0.831 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.308 15.539 -8.634 19.622 hybrid contribution -0.493 -1.463 0.360 1.585 sum 7.816 14.076 -8.273 18.102 Atomic orbital electron populations 1.21989 0.95096 1.01687 1.02662 1.21004 0.96138 0.97898 0.93686 1.21918 1.02149 0.92589 1.03328 1.21601 0.95938 0.90268 1.00806 1.21834 1.01686 1.02173 0.93176 1.22839 0.94100 0.91720 1.09145 1.21457 0.83250 0.91520 0.72381 1.90686 1.22609 1.78448 1.47476 1.48265 1.09549 1.11091 1.64243 1.21210 1.01667 0.77124 0.86735 1.44055 1.01262 1.72403 1.11292 1.18170 0.93320 0.94036 1.35175 0.96004 1.26382 0.96231 1.00442 0.95116 1.69984 1.32581 1.24283 1.31083 0.85855 0.78997 0.77739 0.80411 1.16996 1.23831 1.18751 1.21617 0.89553 1.02480 0.87454 1.23419 1.02676 0.96633 1.01157 1.23180 1.00681 0.93167 1.05618 1.21523 0.83732 0.90941 0.72637 1.90717 1.22557 1.79054 1.45916 0.94500 0.91787 0.90977 0.90956 0.90538 0.91138 0.91178 0.86891 0.92097 0.94133 0.84449 0.83058 0.90742 0.88895 0.92390 0.86836 0.89848 0.87830 0.87524 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.55 71.98 0.62 -2.78 16 2 C -0.07 -1.24 2.17 -10.80 -0.02 -1.26 16 3 C -0.14 -1.49 8.67 71.98 0.62 -0.87 16 4 C -0.08 -1.93 0.49 -52.32 -0.03 -1.95 16 5 C -0.13 -2.90 7.72 71.98 0.56 -2.34 16 6 C -0.14 -2.72 5.77 30.46 0.18 -2.54 16 7 C 0.52 16.17 8.08 87.99 0.71 16.88 16 8 O -0.52 -18.29 17.48 -2.87 -0.05 -18.34 16 9 N -0.59 -21.39 2.79 -767.66 -2.14 -23.53 16 10 C 0.34 14.29 6.12 170.96 1.05 15.33 16 11 N -0.57 -27.36 2.29 -689.68 -1.58 -28.94 16 12 C -0.28 -16.07 9.17 84.04 0.77 -15.30 16 13 H 0.02 1.50 7.97 -2.91 -0.02 1.48 16 14 C 0.02 1.03 3.75 84.86 0.32 1.34 16 15 N -0.94 -58.73 13.97 21.65 0.30 -58.42 16 16 Si 0.94 45.86 24.86 68.60 1.71 47.57 16 17 H -0.25 -10.93 5.81 99.48 0.58 -10.35 16 18 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 19 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 20 C 0.10 4.09 5.16 44.99 0.23 4.32 16 21 C -0.20 -8.70 6.68 30.59 0.20 -8.50 16 22 C -0.19 -7.48 10.36 30.59 0.32 -7.16 16 23 C 0.52 18.84 6.61 87.99 0.58 19.43 16 24 O -0.51 -23.07 15.37 -2.89 -0.04 -23.12 16 25 H 0.04 1.08 6.10 -2.39 -0.01 1.07 16 26 H 0.06 1.31 6.42 -2.39 -0.02 1.29 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 0.56 6.53 -2.38 -0.02 0.55 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.65 6.64 -2.39 -0.02 0.64 16 32 H 0.11 1.53 6.72 -2.39 -0.02 1.51 16 33 H 0.06 1.51 6.37 -2.39 -0.02 1.49 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.14 2.16 7.74 -2.39 -0.02 2.14 16 36 H 0.15 1.90 6.46 -2.38 -0.02 1.88 16 37 H 0.07 3.35 7.73 -2.38 -0.02 3.34 16 38 H 0.09 3.51 7.76 -2.39 -0.02 3.49 16 39 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.11 4.42 8.14 -2.38 -0.02 4.40 16 41 H 0.08 4.32 5.09 -2.38 -0.01 4.31 16 42 H 0.10 3.90 7.86 -2.39 -0.02 3.88 16 43 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 44 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -75.03 340.75 5.16 -69.87 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.87 Total: 20.32 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.10 Total: 14.60 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -3.42 Total: -110.89 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.09 Total: -41.46 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.71 Total: 47.57 kcal Total: -75.03 5.16 -69.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735069892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.879 kcal (2) G-P(sol) polarization free energy of solvation -75.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds