Wall clock time and date at job start Tue Mar 31 2020 07:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46822 * 2 1 4 4 C 1.53002 * 109.47042 * 119.99794 * 2 1 3 5 5 N 1.46898 * 109.47021 * 63.90981 * 4 2 1 6 6 C 1.46900 * 110.99741 * 199.95611 * 5 4 2 7 7 C 1.50694 * 109.47230 * 66.04717 * 6 5 4 8 8 H 1.08002 * 120.00021 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99985 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99955 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99906 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47132 * 90.00195 * 11 9 7 13 13 H 1.48499 * 109.46932 * 209.99862 * 11 9 7 14 14 H 1.48502 * 109.47168 * 329.99811 * 11 9 7 15 15 C 1.46904 * 111.00035 * 76.00299 * 5 4 2 16 16 C 1.50699 * 109.46802 * 199.88536 * 15 5 4 17 17 O 1.21284 * 120.00269 * 355.92895 * 16 15 5 18 18 N 1.34780 * 119.99643 * 175.92505 * 16 15 5 19 19 C 1.46498 * 120.00050 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47679 * 180.02562 * 19 18 16 21 21 C 1.34509 * 125.79539 * 89.99009 * 20 19 18 22 22 C 1.41379 * 106.84631 * 180.02562 * 21 20 19 23 23 C 1.34518 * 106.84084 * 0.02562 * 22 21 20 24 24 O 1.34306 * 108.41729 * 359.73532 * 23 22 21 25 25 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47475 * 300.00143 * 1 2 3 27 27 H 1.08995 * 109.47265 * 60.00481 * 1 2 3 28 28 H 1.08999 * 109.46958 * 239.99885 * 2 1 3 29 29 H 1.09001 * 109.46804 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46666 * 299.99439 * 3 2 1 31 31 H 1.08999 * 109.47447 * 60.00185 * 3 2 1 32 32 H 1.08996 * 109.47318 * 303.90556 * 4 2 1 33 33 H 1.09000 * 109.46862 * 183.90877 * 4 2 1 34 34 H 1.08998 * 109.47249 * 186.04862 * 6 5 4 35 35 H 1.08999 * 109.47097 * 306.04600 * 6 5 4 36 36 H 0.96996 * 119.99684 * 179.97438 * 10 9 7 37 37 H 1.08995 * 109.46997 * 79.88578 * 15 5 4 38 38 H 1.08996 * 109.46974 * 319.88656 * 15 5 4 39 39 H 0.97004 * 120.00106 * 359.97438 * 18 16 15 40 40 H 1.09012 * 109.46835 * 299.99767 * 19 18 16 41 41 H 1.09003 * 109.47637 * 59.99203 * 19 18 16 42 42 H 1.08001 * 126.57672 * 0.04840 * 21 20 19 43 43 H 1.07996 * 126.58414 * 179.97438 * 22 21 20 44 44 H 1.08000 * 125.79535 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6289 -2.1308 1.2030 6 6 1.6686 -2.7348 2.5415 7 6 0.6271 -2.0862 3.4164 8 1 -0.0012 -1.3032 3.0181 9 6 0.4762 -2.4924 4.7254 10 7 1.2409 -3.4462 5.2102 11 14 -0.8143 -1.6878 5.8101 12 1 -2.0938 -2.4322 5.6924 13 1 -0.3571 -1.7098 7.2228 14 1 -1.0180 -0.2819 5.3775 15 6 2.4583 -2.8903 0.2579 16 6 1.7407 -4.1556 -0.1357 17 8 0.6802 -4.4372 0.3811 18 7 2.2774 -4.9744 -1.0621 19 6 1.5795 -6.2042 -1.4451 20 6 2.3844 -6.9343 -2.4891 21 6 3.3313 -7.8588 -2.2482 22 6 3.8243 -8.2776 -3.5053 23 6 3.1497 -7.5834 -4.4394 24 8 2.2751 -6.7753 -3.8183 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6207 -0.2494 2.1379 33 1 3.1277 -0.6609 1.2850 34 1 1.4644 -3.8027 2.4644 35 1 2.6555 -2.5843 2.9789 36 1 1.1350 -3.7317 6.1311 37 1 3.4080 -3.1428 0.7295 38 1 2.6430 -2.2860 -0.6303 39 1 3.1253 -4.7490 -1.4757 40 1 1.4587 -6.8413 -0.5689 41 1 0.5991 -5.9545 -1.8507 42 1 3.6528 -8.2135 -1.2801 43 1 4.5953 -9.0129 -3.6819 44 1 3.2849 -7.6656 -5.5078 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755670635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:11 Heat of formation + Delta-G solvation = -20.714902 kcal Electronic energy + Delta-G solvation = -23708.726025 eV Core-core repulsion = 20241.934410 eV Total energy + Delta-G solvation = -3466.791616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.78362 -39.30477 -37.10532 -34.80218 -33.84157 -33.14903 -32.30168 -30.66353 -28.19939 -26.75899 -26.60101 -25.52194 -23.73243 -21.96758 -21.10126 -20.73193 -20.13602 -19.16780 -17.79278 -16.66930 -16.42703 -16.27878 -15.44601 -15.22371 -14.90290 -14.47918 -14.17130 -13.95895 -13.84480 -13.34230 -13.21376 -13.04488 -12.88195 -12.63581 -12.33516 -12.07343 -11.85622 -11.77531 -11.68766 -11.20868 -11.05332 -10.72641 -10.59599 -10.43892 -10.23530 -10.17139 -9.90802 -9.76471 -9.36211 -9.07572 -8.87325 -8.69248 -8.31224 -7.18599 -5.91644 -3.90448 1.40656 2.34636 2.72788 3.18263 3.39710 3.45291 3.48092 3.53646 4.41509 4.51752 4.80228 4.83297 4.94222 5.22881 5.30600 5.32319 5.44714 5.46319 5.56590 5.62331 5.66338 5.69131 5.74538 5.83910 5.86584 5.98765 6.11673 6.16561 6.25290 6.32705 6.45754 6.53733 6.55530 6.61131 6.90951 6.92314 7.03899 7.37181 7.38782 7.72406 7.91222 8.22241 8.28063 8.60540 8.75318 9.15806 9.71801 11.19904 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.003737 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.033471 B = 7490.022980 C = 8864.276530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C -0.145 4.145 4 C 0.066 3.934 5 N -0.516 5.516 6 C 0.194 3.806 7 C -0.496 4.496 8 H 0.063 0.937 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.038 3.962 16 C 0.513 3.487 17 O -0.496 6.496 18 N -0.743 5.743 19 C 0.204 3.796 20 C -0.028 4.028 21 C -0.189 4.189 22 C -0.217 4.217 23 C -0.036 4.036 24 O -0.172 6.172 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.019 0.981 34 H 0.042 0.958 35 H -0.015 1.015 36 H 0.259 0.741 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.398 0.602 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 -3.463 -18.490 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.062 4.062 5 N -0.240 5.240 6 C 0.070 3.930 7 C -0.535 4.535 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.094 4.094 16 C 0.299 3.701 17 O -0.367 6.367 18 N -0.400 5.400 19 C 0.081 3.919 20 C -0.078 4.078 21 C -0.209 4.209 22 C -0.237 4.237 23 C -0.105 4.105 24 O -0.068 6.068 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.037 0.963 34 H 0.060 0.940 35 H 0.003 0.997 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.231 0.769 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.540 -3.575 -18.184 19.343 hybrid contribution 0.906 0.095 0.674 1.133 sum 6.446 -3.479 -17.510 18.981 Atomic orbital electron populations 1.21670 0.94690 1.02994 0.99796 1.21129 0.96919 0.94713 0.98253 1.21819 1.00297 0.96800 1.01366 1.22118 0.96258 0.89361 0.98479 1.61799 1.50296 1.00609 1.11297 1.19804 0.95297 0.96227 0.81700 1.21108 1.17890 1.19661 0.94815 0.91865 1.24956 0.96298 0.95349 0.98057 1.69962 1.39482 1.29280 1.15360 0.86539 0.81915 0.79723 0.79459 1.20700 1.21502 1.19920 1.21889 0.95252 0.93413 0.98875 1.20900 0.86182 0.84815 0.78238 1.90773 1.21432 1.73142 1.51322 1.46134 1.26075 1.23241 1.44538 1.19506 0.93963 0.85801 0.92663 1.22461 1.01777 1.01783 0.81793 1.21743 0.99259 1.00263 0.99653 1.21880 1.04620 1.04718 0.92441 1.24097 0.92920 0.94589 0.98859 1.84057 1.50650 1.53241 1.18822 0.90961 0.93103 0.94678 0.92460 0.93333 0.93274 0.92630 0.89104 0.96319 0.94027 0.99713 0.93144 0.92713 0.89462 0.76894 0.88432 0.89951 0.83093 0.83339 0.78053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.07 37.16 0.34 -1.89 16 2 C -0.09 -1.42 2.96 -90.62 -0.27 -1.69 16 3 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 4 C 0.07 1.24 4.19 -3.82 -0.02 1.23 16 5 N -0.52 -11.07 3.42 -237.52 -0.81 -11.88 16 6 C 0.19 5.18 4.33 -4.98 -0.02 5.16 16 7 C -0.50 -14.28 8.23 -34.44 -0.28 -14.56 16 8 H 0.06 1.80 7.31 -52.49 -0.38 1.42 16 9 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 11 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.04 0.65 5.30 -4.97 -0.03 0.63 16 16 C 0.51 9.24 7.56 -10.98 -0.08 9.16 16 17 O -0.50 -11.45 15.06 5.55 0.08 -11.36 16 18 N -0.74 -10.00 5.55 -61.47 -0.34 -10.34 16 19 C 0.20 2.58 6.20 -5.20 -0.03 2.55 16 20 C -0.03 -0.31 6.69 -35.63 -0.24 -0.55 16 21 C -0.19 -1.94 10.81 -39.71 -0.43 -2.37 16 22 C -0.22 -1.90 10.91 -39.70 -0.43 -2.33 16 23 C -0.04 -0.30 12.09 29.42 0.36 0.05 16 24 O -0.17 -1.91 10.65 5.68 0.06 -1.85 16 25 H 0.07 1.39 7.72 -51.93 -0.40 0.99 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.84 6.69 -51.93 -0.35 0.49 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 1.94 6.58 -51.93 -0.34 1.60 16 33 H 0.02 0.33 8.00 -51.93 -0.42 -0.08 16 34 H 0.04 1.24 6.60 -51.93 -0.34 0.89 16 35 H -0.01 -0.42 8.12 -51.93 -0.42 -0.84 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 38 H 0.09 1.24 6.47 -51.93 -0.34 0.90 16 39 H 0.40 4.29 8.46 -40.82 -0.35 3.94 16 40 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -34.25 365.23 -7.80 -42.05 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.11 Total: 2.03 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -0.89 Total: -4.69 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.42 Total: -49.01 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.14 Total: -13.21 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.25 -7.80 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755670635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.330 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds