Wall clock time and date at job start Tue Mar 31 2020 07:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46822 * 2 1 4 4 C 1.53002 * 109.47042 * 119.99794 * 2 1 3 5 5 N 1.46898 * 109.47021 * 63.90981 * 4 2 1 6 6 C 1.46900 * 110.99741 * 199.95611 * 5 4 2 7 7 C 1.50694 * 109.47230 * 66.04717 * 6 5 4 8 8 H 1.08002 * 120.00021 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99985 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99955 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99906 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47132 * 90.00195 * 11 9 7 13 13 H 1.48499 * 109.46932 * 209.99862 * 11 9 7 14 14 H 1.48502 * 109.47168 * 329.99811 * 11 9 7 15 15 C 1.46904 * 111.00035 * 76.00299 * 5 4 2 16 16 C 1.50699 * 109.46802 * 199.88536 * 15 5 4 17 17 O 1.21284 * 120.00269 * 355.92895 * 16 15 5 18 18 N 1.34780 * 119.99643 * 175.92505 * 16 15 5 19 19 C 1.46498 * 120.00050 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47679 * 180.02562 * 19 18 16 21 21 C 1.34509 * 125.79539 * 89.99009 * 20 19 18 22 22 C 1.41379 * 106.84631 * 180.02562 * 21 20 19 23 23 C 1.34518 * 106.84084 * 0.02562 * 22 21 20 24 24 O 1.34306 * 108.41729 * 359.73532 * 23 22 21 25 25 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47475 * 300.00143 * 1 2 3 27 27 H 1.08995 * 109.47265 * 60.00481 * 1 2 3 28 28 H 1.08999 * 109.46958 * 239.99885 * 2 1 3 29 29 H 1.09001 * 109.46804 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46666 * 299.99439 * 3 2 1 31 31 H 1.08999 * 109.47447 * 60.00185 * 3 2 1 32 32 H 1.08996 * 109.47318 * 303.90556 * 4 2 1 33 33 H 1.09000 * 109.46862 * 183.90877 * 4 2 1 34 34 H 1.08998 * 109.47249 * 186.04862 * 6 5 4 35 35 H 1.08999 * 109.47097 * 306.04600 * 6 5 4 36 36 H 0.96996 * 119.99684 * 179.97438 * 10 9 7 37 37 H 1.08995 * 109.46997 * 79.88578 * 15 5 4 38 38 H 1.08996 * 109.46974 * 319.88656 * 15 5 4 39 39 H 0.97004 * 120.00106 * 359.97438 * 18 16 15 40 40 H 1.09012 * 109.46835 * 299.99767 * 19 18 16 41 41 H 1.09003 * 109.47637 * 59.99203 * 19 18 16 42 42 H 1.08001 * 126.57672 * 0.04840 * 21 20 19 43 43 H 1.07996 * 126.58414 * 179.97438 * 22 21 20 44 44 H 1.08000 * 125.79535 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6289 -2.1308 1.2030 6 6 1.6686 -2.7348 2.5415 7 6 0.6271 -2.0862 3.4164 8 1 -0.0012 -1.3032 3.0181 9 6 0.4762 -2.4924 4.7254 10 7 1.2409 -3.4462 5.2102 11 14 -0.8143 -1.6878 5.8101 12 1 -2.0938 -2.4322 5.6924 13 1 -0.3571 -1.7098 7.2228 14 1 -1.0180 -0.2819 5.3775 15 6 2.4583 -2.8903 0.2579 16 6 1.7407 -4.1556 -0.1357 17 8 0.6802 -4.4372 0.3811 18 7 2.2774 -4.9744 -1.0621 19 6 1.5795 -6.2042 -1.4451 20 6 2.3844 -6.9343 -2.4891 21 6 3.3313 -7.8588 -2.2482 22 6 3.8243 -8.2776 -3.5053 23 6 3.1497 -7.5834 -4.4394 24 8 2.2751 -6.7753 -3.8183 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8900 32 1 1.6207 -0.2494 2.1379 33 1 3.1277 -0.6609 1.2850 34 1 1.4644 -3.8027 2.4644 35 1 2.6555 -2.5843 2.9789 36 1 1.1350 -3.7317 6.1311 37 1 3.4080 -3.1428 0.7295 38 1 2.6430 -2.2860 -0.6303 39 1 3.1253 -4.7490 -1.4757 40 1 1.4587 -6.8413 -0.5689 41 1 0.5991 -5.9545 -1.8507 42 1 3.6528 -8.2135 -1.2801 43 1 4.5953 -9.0129 -3.6819 44 1 3.2849 -7.6656 -5.5078 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755670635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:11 Heat of formation + Delta-G solvation = -44.528909 kcal Electronic energy + Delta-G solvation = -23709.758678 eV Core-core repulsion = 20241.934410 eV Total energy + Delta-G solvation = -3467.824268 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.54771 -40.77055 -38.62544 -36.07085 -35.46586 -34.33341 -33.92368 -31.73320 -29.83590 -28.36765 -27.83526 -26.66784 -25.53846 -22.84121 -22.70290 -21.64191 -21.45069 -20.53819 -18.79011 -18.48045 -17.88689 -17.29684 -16.87979 -16.55065 -16.33431 -16.02326 -15.50991 -15.42260 -15.15181 -14.78782 -14.42578 -14.16732 -14.06559 -13.77511 -13.59366 -13.53874 -13.38464 -13.05102 -12.92706 -12.90292 -12.64423 -12.56674 -12.42683 -11.98969 -11.72074 -11.55468 -11.44392 -11.09000 -10.95563 -10.77717 -10.54781 -10.15423 -9.52741 -8.90855 -8.16409 -6.23405 0.61299 1.38523 1.41881 1.51595 1.61776 1.74253 1.94259 2.36141 2.43237 3.16502 3.37845 3.61593 3.96129 4.01209 4.10646 4.12191 4.23109 4.31530 4.35819 4.38575 4.47401 4.55446 4.73477 4.88017 4.90365 4.93767 4.98397 5.00120 5.12855 5.13366 5.19374 5.26224 5.31274 5.37311 5.41611 5.56170 5.59479 5.68014 5.69149 6.11727 6.15894 6.42848 6.47524 6.72681 6.91566 7.36955 7.44061 8.95293 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.003737 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.033471 B = 7490.022980 C = 8864.276530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 C -0.139 4.139 4 C 0.067 3.933 5 N -0.528 5.528 6 C 0.215 3.785 7 C -0.510 4.510 8 H 0.059 0.941 9 C -0.002 4.002 10 N -0.937 5.937 11 Si 0.964 3.036 12 H -0.279 1.279 13 H -0.280 1.280 14 H -0.262 1.262 15 C 0.036 3.964 16 C 0.512 3.488 17 O -0.556 6.556 18 N -0.720 5.720 19 C 0.207 3.793 20 C -0.049 4.049 21 C -0.189 4.189 22 C -0.229 4.229 23 C -0.025 4.025 24 O -0.188 6.188 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.003 0.997 35 H -0.039 1.039 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.414 0.586 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.155 0.845 43 H 0.172 0.828 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.040 -2.543 -20.831 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.102 4.102 3 C -0.197 4.197 4 C -0.061 4.061 5 N -0.252 5.252 6 C 0.089 3.911 7 C -0.549 4.549 8 H 0.078 0.922 9 C -0.199 4.199 10 N -0.578 5.578 11 Si 0.789 3.211 12 H -0.205 1.205 13 H -0.205 1.205 14 H -0.186 1.186 15 C -0.095 4.095 16 C 0.299 3.701 17 O -0.432 6.432 18 N -0.376 5.376 19 C 0.084 3.916 20 C -0.099 4.099 21 C -0.209 4.209 22 C -0.248 4.248 23 C -0.093 4.093 24 O -0.084 6.084 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.022 0.978 35 H -0.022 1.022 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.146 0.854 39 H 0.250 0.750 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.173 0.827 43 H 0.190 0.810 44 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.597 -2.647 -20.579 21.772 hybrid contribution 0.672 -0.274 1.269 1.462 sum 7.269 -2.922 -19.310 20.839 Atomic orbital electron populations 1.21615 0.95699 1.00988 1.00474 1.21092 0.95962 0.96298 0.96839 1.21767 1.01182 0.94642 1.02084 1.22149 0.96946 0.87796 0.99181 1.61630 1.52386 1.02111 1.09068 1.19324 0.93282 0.94168 0.84310 1.21422 1.18257 1.19595 0.95588 0.92249 1.25872 0.98488 0.95898 0.99615 1.70092 1.41188 1.30661 1.15847 0.85460 0.78817 0.79171 0.77641 1.20539 1.20517 1.18590 1.22020 0.94644 0.93467 0.99352 1.21074 0.85428 0.85336 0.78261 1.90750 1.24139 1.74579 1.53775 1.45908 1.26230 1.22671 1.42839 1.19377 0.93938 0.85231 0.93072 1.22067 1.02884 1.03030 0.81906 1.21983 0.98612 0.99530 1.00780 1.22207 1.05437 1.05502 0.91619 1.24944 0.91075 0.92779 1.00479 1.84043 1.51640 1.54176 1.18589 0.94264 0.94526 0.91859 0.90629 0.91925 0.91068 0.93427 0.92301 0.94953 0.97849 1.02193 0.92954 0.91703 0.85408 0.74970 0.89343 0.90851 0.82690 0.81028 0.74183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.07 71.98 0.65 -3.57 16 2 C -0.08 -2.42 2.96 -10.79 -0.03 -2.45 16 3 C -0.14 -3.21 9.19 71.98 0.66 -2.55 16 4 C 0.07 2.52 4.19 86.30 0.36 2.88 16 5 N -0.53 -23.19 3.42 -905.39 -3.09 -26.29 16 6 C 0.22 12.05 4.33 85.55 0.37 12.42 16 7 C -0.51 -30.52 8.23 25.60 0.21 -30.31 16 8 H 0.06 3.51 7.31 -2.91 -0.02 3.49 16 9 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 10 N -0.94 -59.15 13.29 21.45 0.28 -58.86 16 11 Si 0.96 46.82 29.54 68.60 2.03 48.84 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 15 C 0.04 1.25 5.30 85.56 0.45 1.70 16 16 C 0.51 18.88 7.56 87.66 0.66 19.55 16 17 O -0.56 -27.11 15.06 -3.04 -0.05 -27.15 16 18 N -0.72 -19.34 5.55 -466.78 -2.59 -21.93 16 19 C 0.21 5.39 6.20 85.63 0.53 5.92 16 20 C -0.05 -1.08 6.69 24.83 0.17 -0.91 16 21 C -0.19 -3.66 10.81 22.19 0.24 -3.42 16 22 C -0.23 -3.43 10.91 22.19 0.24 -3.18 16 23 C -0.03 -0.35 12.09 66.97 0.81 0.46 16 24 O -0.19 -3.88 10.65 -2.59 -0.03 -3.90 16 25 H 0.04 1.52 7.72 -2.39 -0.02 1.50 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 1.95 6.69 -2.39 -0.02 1.94 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 2.58 6.58 -2.39 -0.02 2.56 16 33 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 34 H 0.00 0.21 6.60 -2.39 -0.02 0.20 16 35 H -0.04 -2.34 8.12 -2.39 -0.02 -2.36 16 36 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.07 2.13 8.00 -2.39 -0.02 2.11 16 38 H 0.13 3.29 6.47 -2.39 -0.02 3.28 16 39 H 0.41 8.39 8.46 -92.70 -0.78 7.60 16 40 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 43 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.24 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -78.64 365.23 2.54 -76.09 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.20 Total: 16.31 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.79 Total: -3.11 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -5.40 Total: -107.08 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.07 Total: -31.06 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -78.64 2.54 -76.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755670635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.564 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds