Wall clock time and date at job start Tue Mar 31 2020 07:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47045 * 2 1 4 4 C 1.52996 * 109.47047 * 119.99703 * 2 1 3 5 5 N 1.46500 * 109.47208 * 65.00093 * 4 2 1 6 6 C 1.46500 * 120.00199 * 264.94203 * 5 4 2 7 7 C 1.50700 * 109.47163 * 264.45764 * 6 5 4 8 8 H 1.08002 * 119.99670 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00489 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99656 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00381 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47124 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47034 * 119.99905 * 11 9 7 14 14 H 1.48503 * 109.47597 * 240.00132 * 11 9 7 15 15 C 1.34781 * 120.00187 * 84.93572 * 5 4 2 16 16 O 1.21500 * 119.99516 * 4.73211 * 15 5 4 17 17 C 1.48322 * 120.00262 * 184.72947 * 15 5 4 18 18 C 1.42277 * 126.94081 * 174.50724 * 17 15 5 19 19 C 1.35308 * 103.92386 * 180.02562 * 18 17 15 20 20 C 1.50698 * 126.66499 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.47151 * 119.99943 * 20 19 18 22 22 C 1.53005 * 109.47415 * 239.99936 * 20 19 18 23 23 O 1.34018 * 106.67194 * 0.26165 * 19 18 17 24 24 N 1.20912 * 111.83930 * 359.52729 * 23 19 18 25 25 H 1.09001 * 109.47408 * 60.00319 * 1 2 3 26 26 H 1.09007 * 109.47388 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47828 * 300.00212 * 1 2 3 28 28 H 1.08995 * 109.47510 * 239.99822 * 2 1 3 29 29 H 1.09002 * 109.47425 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47269 * 300.00067 * 3 2 1 31 31 H 1.09003 * 109.47446 * 60.00098 * 3 2 1 32 32 H 1.08997 * 109.47474 * 305.00471 * 4 2 1 33 33 H 1.08999 * 109.47401 * 185.00080 * 4 2 1 34 34 H 1.09000 * 109.47259 * 24.45828 * 6 5 4 35 35 H 1.09000 * 109.47487 * 144.45844 * 6 5 4 36 36 H 0.96995 * 120.00172 * 179.97438 * 10 9 7 37 37 H 1.08001 * 128.03447 * 0.04572 * 18 17 15 38 38 H 1.08997 * 109.47549 * 0.02562 * 20 19 18 39 39 H 1.09004 * 109.47393 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.46970 * 60.00170 * 21 20 19 41 41 H 1.09002 * 109.47442 * 300.00342 * 21 20 19 42 42 H 1.09000 * 109.47196 * 300.00131 * 22 20 19 43 43 H 1.09001 * 109.46552 * 59.99944 * 22 20 19 44 44 H 1.08996 * 109.47054 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1907 6 6 0.4287 -2.5848 1.8575 7 6 0.7697 -3.1192 3.2246 8 1 1.7954 -3.1222 3.5628 9 6 -0.2276 -3.6042 4.0438 10 7 -1.4767 -3.6000 3.6322 11 14 0.1952 -4.2672 5.7381 12 1 1.6596 -4.1606 5.9602 13 1 -0.5206 -3.4768 6.7717 14 1 -0.2175 -5.6908 5.8298 15 6 2.4215 -3.0157 0.5232 16 8 3.4792 -2.6588 0.0434 17 6 1.9768 -4.4228 0.3744 18 6 2.6115 -5.4443 -0.3859 19 6 1.8232 -6.5278 -0.1975 20 6 2.0294 -7.9027 -0.7790 21 6 2.1809 -8.9185 0.3550 22 6 0.8228 -8.2778 -1.6419 23 8 0.8205 -6.1394 0.6024 24 7 0.9201 -4.9758 0.9158 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1262 -0.6443 1.2952 34 1 -0.2617 -1.7471 1.9566 35 1 -0.0380 -3.3722 1.2656 36 1 -2.1784 -3.9416 4.2082 37 1 3.5131 -5.3717 -0.9759 38 1 2.9304 -7.9064 -1.3924 39 1 2.3305 -9.9130 -0.0656 40 1 1.2801 -8.9150 0.9687 41 1 3.0404 -8.6514 0.9698 42 1 -0.0780 -8.2742 -1.0282 43 1 0.7149 -7.5540 -2.4498 44 1 0.9722 -9.2720 -2.0628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764009762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:20 Heat of formation + Delta-G solvation = 12.012518 kcal Electronic energy + Delta-G solvation = -24806.448044 eV Core-core repulsion = 21341.075596 eV Total energy + Delta-G solvation = -3465.372448 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.43271 -39.14833 -36.13384 -35.94116 -34.15724 -33.07726 -32.20337 -30.22182 -27.58304 -27.22196 -26.79954 -26.17554 -23.81170 -22.76857 -22.69225 -21.26589 -19.90948 -18.04175 -17.17062 -16.77318 -16.45272 -16.01917 -15.61133 -14.85198 -14.49933 -14.44003 -14.40387 -13.89127 -13.32850 -13.21910 -13.18016 -12.84364 -12.43778 -12.24470 -12.20206 -12.03244 -11.74373 -11.44226 -11.39403 -11.31651 -11.11205 -10.99744 -10.89694 -10.81345 -10.56253 -10.31637 -10.19487 -9.91075 -9.80295 -9.63895 -9.39403 -8.94952 -8.39860 -7.71706 -6.05474 -4.09087 1.88160 2.19686 3.27167 3.35127 3.39346 3.44299 3.75026 3.92090 4.41867 4.61262 4.75348 4.92568 5.02645 5.20895 5.28767 5.29891 5.32900 5.44228 5.51202 5.56110 5.67714 5.73228 5.77381 5.85588 5.90184 5.93643 5.99717 6.02543 6.16386 6.17078 6.23532 6.24924 6.31771 6.36666 6.41229 6.60427 6.72555 6.83517 7.40909 7.60065 7.86476 8.19415 8.24641 8.67302 8.93091 8.97504 9.55130 11.02367 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.006694 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.547962 B = 4181.959437 C = 6086.022581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.577 5.577 6 C 0.225 3.775 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.071 3.929 10 N -0.886 5.886 11 Si 0.889 3.111 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.594 3.406 16 O -0.564 6.564 17 C -0.032 4.032 18 C -0.186 4.186 19 C -0.054 4.054 20 C -0.007 4.007 21 C -0.151 4.151 22 C -0.150 4.150 23 O 0.120 5.880 24 N -0.261 5.261 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.170 0.830 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -4.215 -9.656 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.002 3.998 5 N -0.306 5.306 6 C 0.106 3.894 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.132 4.132 10 N -0.525 5.525 11 Si 0.717 3.283 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.381 3.619 16 O -0.444 6.444 17 C -0.191 4.191 18 C -0.209 4.209 19 C -0.117 4.117 20 C -0.027 4.027 21 C -0.208 4.208 22 C -0.207 4.207 23 O 0.042 5.958 24 N 0.041 4.959 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.187 0.813 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.643 -3.519 -8.998 10.325 hybrid contribution 0.777 -0.429 0.691 1.125 sum 4.420 -3.949 -8.307 10.205 Atomic orbital electron populations 1.21875 0.94929 1.02514 1.00961 1.21492 0.96413 0.95952 0.99232 1.21743 1.00831 0.95785 1.01494 1.21436 1.00188 0.80708 0.97482 1.48166 1.26100 1.06964 1.49364 1.19937 0.80279 0.96455 0.92775 1.21343 0.93852 1.41462 0.99546 0.92794 1.24802 0.94825 0.95445 0.98092 1.69924 0.99537 1.46220 1.36797 0.86579 0.78505 0.78824 0.84370 1.19944 1.20949 1.20850 1.16934 0.83575 0.82587 0.78826 1.90666 1.23081 1.78904 1.51731 1.23392 0.95753 0.97906 1.02072 1.22272 1.03142 0.90725 1.04717 1.24329 0.91219 0.98126 0.98034 1.19673 1.00186 0.86436 0.96370 1.21889 1.03104 0.97900 0.97919 1.21883 0.97626 1.01499 0.99704 1.84942 1.40868 1.21597 1.48395 1.74974 1.17153 0.90104 1.13637 0.93545 0.91936 0.92582 0.91315 0.92760 0.92903 0.92637 0.90055 0.91024 0.94330 0.91860 0.92860 0.81261 0.88421 0.91718 0.91576 0.92123 0.91594 0.92194 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.34 37.15 0.31 -2.06 16 2 C -0.11 -1.82 3.09 -90.63 -0.28 -2.10 16 3 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 4 C 0.13 2.39 4.81 -4.04 -0.02 2.37 16 5 N -0.58 -12.93 2.21 -176.00 -0.39 -13.32 16 6 C 0.22 5.63 3.68 -5.19 -0.02 5.62 16 7 C -0.52 -14.37 8.66 -34.44 -0.30 -14.66 16 8 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 10 N -0.89 -25.23 13.29 55.43 0.74 -24.50 16 11 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.59 13.60 7.61 -12.11 -0.09 13.50 16 16 O -0.56 -13.27 16.59 5.37 0.09 -13.18 16 17 C -0.03 -0.69 6.88 -82.53 -0.57 -1.26 16 18 C -0.19 -3.22 10.91 -39.08 -0.43 -3.65 16 19 C -0.05 -0.84 5.98 -35.35 -0.21 -1.06 16 20 C -0.01 -0.08 3.34 -91.77 -0.31 -0.38 16 21 C -0.15 -1.52 9.18 37.16 0.34 -1.18 16 22 C -0.15 -1.42 9.18 37.16 0.34 -1.08 16 23 O 0.12 2.33 11.18 17.24 0.19 2.52 16 24 N -0.26 -5.90 8.13 33.29 0.27 -5.63 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.17 6.38 -51.93 -0.33 0.83 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.53 8.03 -51.93 -0.42 1.12 16 33 H 0.07 1.37 7.51 -51.93 -0.39 0.98 16 34 H 0.04 1.00 6.81 -51.93 -0.35 0.64 16 35 H 0.06 1.69 5.25 -51.93 -0.27 1.42 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 38 H 0.10 0.86 8.12 -51.93 -0.42 0.44 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -31.16 362.55 -6.87 -38.03 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.23 Total: -0.40 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.99 Total: -5.59 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.62 Total: -43.44 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.28 Total: -10.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.16 -6.87 -38.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764009762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.038 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds