Wall clock time and date at job start Tue Mar 31 2020 07:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47045 * 2 1 4 4 C 1.52996 * 109.47047 * 119.99703 * 2 1 3 5 5 N 1.46500 * 109.47208 * 65.00093 * 4 2 1 6 6 C 1.46500 * 120.00199 * 264.94203 * 5 4 2 7 7 C 1.50700 * 109.47163 * 264.45764 * 6 5 4 8 8 H 1.08002 * 119.99670 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00489 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99656 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00381 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47124 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47034 * 119.99905 * 11 9 7 14 14 H 1.48503 * 109.47597 * 240.00132 * 11 9 7 15 15 C 1.34781 * 120.00187 * 84.93572 * 5 4 2 16 16 O 1.21500 * 119.99516 * 4.73211 * 15 5 4 17 17 C 1.48322 * 120.00262 * 184.72947 * 15 5 4 18 18 C 1.42277 * 126.94081 * 174.50724 * 17 15 5 19 19 C 1.35308 * 103.92386 * 180.02562 * 18 17 15 20 20 C 1.50698 * 126.66499 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.47151 * 119.99943 * 20 19 18 22 22 C 1.53005 * 109.47415 * 239.99936 * 20 19 18 23 23 O 1.34018 * 106.67194 * 0.26165 * 19 18 17 24 24 N 1.20912 * 111.83930 * 359.52729 * 23 19 18 25 25 H 1.09001 * 109.47408 * 60.00319 * 1 2 3 26 26 H 1.09007 * 109.47388 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47828 * 300.00212 * 1 2 3 28 28 H 1.08995 * 109.47510 * 239.99822 * 2 1 3 29 29 H 1.09002 * 109.47425 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47269 * 300.00067 * 3 2 1 31 31 H 1.09003 * 109.47446 * 60.00098 * 3 2 1 32 32 H 1.08997 * 109.47474 * 305.00471 * 4 2 1 33 33 H 1.08999 * 109.47401 * 185.00080 * 4 2 1 34 34 H 1.09000 * 109.47259 * 24.45828 * 6 5 4 35 35 H 1.09000 * 109.47487 * 144.45844 * 6 5 4 36 36 H 0.96995 * 120.00172 * 179.97438 * 10 9 7 37 37 H 1.08001 * 128.03447 * 0.04572 * 18 17 15 38 38 H 1.08997 * 109.47549 * 0.02562 * 20 19 18 39 39 H 1.09004 * 109.47393 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.46970 * 60.00170 * 21 20 19 41 41 H 1.09002 * 109.47442 * 300.00342 * 21 20 19 42 42 H 1.09000 * 109.47196 * 300.00131 * 22 20 19 43 43 H 1.09001 * 109.46552 * 59.99944 * 22 20 19 44 44 H 1.08996 * 109.47054 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1907 6 6 0.4287 -2.5848 1.8575 7 6 0.7697 -3.1192 3.2246 8 1 1.7954 -3.1222 3.5628 9 6 -0.2276 -3.6042 4.0438 10 7 -1.4767 -3.6000 3.6322 11 14 0.1952 -4.2672 5.7381 12 1 1.6596 -4.1606 5.9602 13 1 -0.5206 -3.4768 6.7717 14 1 -0.2175 -5.6908 5.8298 15 6 2.4215 -3.0157 0.5232 16 8 3.4792 -2.6588 0.0434 17 6 1.9768 -4.4228 0.3744 18 6 2.6115 -5.4443 -0.3859 19 6 1.8232 -6.5278 -0.1975 20 6 2.0294 -7.9027 -0.7790 21 6 2.1809 -8.9185 0.3550 22 6 0.8228 -8.2778 -1.6419 23 8 0.8205 -6.1394 0.6024 24 7 0.9201 -4.9758 0.9158 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1262 -0.6443 1.2952 34 1 -0.2617 -1.7471 1.9566 35 1 -0.0380 -3.3722 1.2656 36 1 -2.1784 -3.9416 4.2082 37 1 3.5131 -5.3717 -0.9759 38 1 2.9304 -7.9064 -1.3924 39 1 2.3305 -9.9130 -0.0656 40 1 1.2801 -8.9150 0.9687 41 1 3.0404 -8.6514 0.9698 42 1 -0.0780 -8.2742 -1.0282 43 1 0.7149 -7.5540 -2.4498 44 1 0.9722 -9.2720 -2.0628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764009762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:20 Heat of formation + Delta-G solvation = -4.671609 kcal Electronic energy + Delta-G solvation = -24807.171522 eV Core-core repulsion = 21341.075596 eV Total energy + Delta-G solvation = -3466.095926 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.97836 -40.89302 -37.72758 -36.92902 -35.87278 -34.69378 -34.11081 -31.57520 -29.51134 -28.04527 -27.98953 -27.83685 -25.51499 -24.52356 -24.02857 -22.63659 -21.26962 -19.63319 -18.85256 -18.48603 -18.17123 -17.66243 -17.18548 -16.42183 -16.12886 -15.98293 -15.76799 -15.11050 -14.75692 -14.55067 -14.42255 -14.20305 -14.06924 -13.79651 -13.68745 -13.11601 -13.01046 -12.99058 -12.81480 -12.67256 -12.46649 -12.25958 -12.18431 -12.13118 -12.07009 -11.90686 -11.67271 -11.62291 -11.52146 -11.35205 -11.19944 -10.55809 -10.29044 -9.54786 -8.18043 -6.28772 0.33329 0.77728 1.33207 1.35428 1.45536 1.99541 2.17560 2.29104 2.40235 3.13074 3.13686 3.47174 3.83802 3.95810 3.96977 4.10988 4.12005 4.18390 4.20118 4.43525 4.53188 4.60108 4.64571 4.74672 4.82887 4.85428 4.88957 4.96157 4.97340 5.00489 5.01882 5.02152 5.16249 5.19399 5.31352 5.38887 5.40031 5.40611 5.44177 5.67021 5.78590 6.09246 6.37674 6.75825 7.04288 7.36227 7.39652 8.89020 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.006694 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.547962 B = 4181.959437 C = 6086.022581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C -0.133 4.133 4 C 0.119 3.881 5 N -0.580 5.580 6 C 0.244 3.756 7 C -0.531 4.531 8 H 0.035 0.965 9 C 0.031 3.969 10 N -0.911 5.911 11 Si 0.946 3.054 12 H -0.278 1.278 13 H -0.272 1.272 14 H -0.277 1.277 15 C 0.587 3.413 16 O -0.577 6.577 17 C -0.061 4.061 18 C -0.192 4.192 19 C -0.032 4.032 20 C -0.006 4.006 21 C -0.150 4.150 22 C -0.148 4.148 23 O 0.115 5.885 24 N -0.304 5.304 25 H 0.071 0.929 26 H 0.030 0.970 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.050 0.950 36 H 0.265 0.735 37 H 0.194 0.806 38 H 0.129 0.871 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -5.158 -10.421 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.191 4.191 4 C -0.003 4.003 5 N -0.309 5.309 6 C 0.124 3.876 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.170 4.170 10 N -0.550 5.550 11 Si 0.772 3.228 12 H -0.203 1.203 13 H -0.197 1.197 14 H -0.203 1.203 15 C 0.374 3.626 16 O -0.458 6.458 17 C -0.219 4.219 18 C -0.215 4.215 19 C -0.095 4.095 20 C -0.025 4.025 21 C -0.208 4.208 22 C -0.205 4.205 23 O 0.037 5.963 24 N -0.002 5.002 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.211 0.789 38 H 0.147 0.853 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.396 -4.439 -9.761 11.589 hybrid contribution 0.563 -0.215 0.867 1.056 sum 4.959 -4.654 -8.894 11.196 Atomic orbital electron populations 1.21815 0.94846 1.00819 1.02253 1.21419 0.96360 0.97658 0.96868 1.21696 1.01135 0.93300 1.02967 1.21660 1.00134 0.79431 0.99079 1.48181 1.25322 1.08336 1.49067 1.19518 0.80938 0.95347 0.91818 1.21411 0.92952 1.41910 1.00733 0.94629 1.25451 0.94710 0.95564 1.01266 1.70008 1.00217 1.46780 1.38022 0.85697 0.77987 0.78485 0.80629 1.20320 1.19741 1.20297 1.17213 0.83452 0.83337 0.78603 1.90630 1.23400 1.79400 1.52368 1.23582 0.96692 0.98076 1.03555 1.22573 1.04174 0.89880 1.04858 1.25257 0.88883 0.99786 0.95524 1.20039 1.02126 0.83437 0.96906 1.21909 1.02020 0.99332 0.97490 1.21896 0.96276 1.03238 0.99129 1.84869 1.42018 1.20568 1.48889 1.74955 1.18345 0.91446 1.15454 0.91015 0.95090 0.92453 0.92772 0.92272 0.90892 0.91690 0.90170 0.91208 0.95572 0.93264 0.92553 0.78869 0.85343 0.88467 0.93154 0.92830 0.93041 0.92394 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 8.34 71.98 0.60 -3.96 16 2 C -0.10 -3.38 3.09 -10.80 -0.03 -3.41 16 3 C -0.13 -3.28 9.19 71.98 0.66 -2.62 16 4 C 0.12 4.66 4.81 86.38 0.42 5.08 16 5 N -0.58 -27.03 2.21 -829.03 -1.83 -28.86 16 6 C 0.24 12.77 3.68 85.63 0.32 13.09 16 7 C -0.53 -30.06 8.66 25.60 0.22 -29.84 16 8 H 0.04 2.10 7.81 -2.91 -0.02 2.08 16 9 C 0.03 1.72 5.46 84.65 0.46 2.18 16 10 N -0.91 -52.73 13.29 21.45 0.28 -52.45 16 11 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 C 0.59 27.71 7.61 86.93 0.66 28.37 16 16 O -0.58 -27.64 16.59 -3.72 -0.06 -27.71 16 17 C -0.06 -2.72 6.88 42.96 0.30 -2.43 16 18 C -0.19 -6.56 10.91 22.60 0.25 -6.32 16 19 C -0.03 -0.96 5.98 25.01 0.15 -0.81 16 20 C -0.01 -0.11 3.34 -11.54 -0.04 -0.15 16 21 C -0.15 -2.65 9.18 71.98 0.66 -1.99 16 22 C -0.15 -2.43 9.18 71.98 0.66 -1.77 16 23 O 0.12 4.55 11.18 71.85 0.80 5.35 16 24 N -0.30 -14.22 8.13 -49.51 -0.40 -14.63 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.03 1.18 6.38 -2.38 -0.02 1.17 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 3.10 8.03 -2.39 -0.02 3.08 16 33 H 0.07 2.73 7.51 -2.39 -0.02 2.71 16 34 H 0.03 1.42 6.81 -2.39 -0.02 1.40 16 35 H 0.05 2.77 5.25 -2.39 -0.01 2.76 16 36 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.19 5.46 8.06 -2.91 -0.02 5.44 16 38 H 0.13 1.73 8.12 -2.39 -0.02 1.71 16 39 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -69.28 362.55 7.07 -62.21 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.97 Total: 13.90 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.28 Total: -4.58 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -1.95 Total: -95.93 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.74 Total: -22.36 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.28 7.07 -62.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764009762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.538 kcal (2) G-P(sol) polarization free energy of solvation -69.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds