Wall clock time and date at job start Tue Mar 31 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34894 * 116.99638 * 2 1 4 4 O 1.21623 * 120.00412 * 359.97438 * 3 2 1 5 5 C 1.46495 * 119.99854 * 179.97438 * 3 2 1 6 6 C 1.37994 * 126.26644 * 180.02562 * 5 3 2 7 7 C 1.39793 * 106.97032 * 179.76329 * 6 5 3 8 8 C 1.50700 * 126.07881 * 180.23986 * 7 6 5 9 9 N 1.46907 * 109.46865 * 69.02001 * 8 7 6 10 10 C 1.46905 * 110.99582 * 201.55384 * 9 8 7 11 11 C 1.50703 * 109.46552 * 164.19521 * 10 9 8 12 12 H 1.08002 * 120.00582 * 4.91491 * 11 10 9 13 13 C 1.37880 * 119.99719 * 184.92005 * 11 10 9 14 14 N 1.31514 * 120.00050 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00138 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47108 * 89.99778 * 15 13 11 17 17 H 1.48498 * 109.47078 * 210.00127 * 15 13 11 18 18 H 1.48506 * 109.46705 * 330.00196 * 15 13 11 19 19 C 1.46903 * 111.00002 * 77.60260 * 9 8 7 20 20 C 1.53005 * 109.46929 * 280.91186 * 19 9 8 21 21 C 1.52997 * 109.47054 * 177.39700 * 20 19 9 22 22 C 1.52998 * 109.47229 * 297.39930 * 20 19 9 23 23 C 1.35488 * 107.84604 * 0.24113 * 7 6 5 24 24 N 1.34961 * 108.97935 * 359.97438 * 23 7 6 25 25 H 0.97004 * 125.62908 * 180.02562 * 24 23 7 26 26 H 1.08997 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46735 * 300.00040 * 1 2 3 28 28 H 1.09003 * 109.46788 * 59.99768 * 1 2 3 29 29 H 1.08002 * 126.51361 * 0.02562 * 6 5 3 30 30 H 1.08995 * 109.47239 * 189.01806 * 8 7 6 31 31 H 1.08997 * 109.47285 * 309.02079 * 8 7 6 32 32 H 1.08999 * 109.47230 * 284.19287 * 10 9 8 33 33 H 1.08997 * 109.46951 * 44.19714 * 10 9 8 34 34 H 0.97001 * 119.99883 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.46988 * 40.91092 * 19 9 8 36 36 H 1.08999 * 109.46704 * 160.91841 * 19 9 8 37 37 H 1.09006 * 109.46687 * 57.39934 * 20 19 9 38 38 H 1.09001 * 109.47063 * 59.99814 * 21 20 19 39 39 H 1.08993 * 109.46943 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46739 * 300.00115 * 21 20 19 41 41 H 1.08998 * 109.46754 * 304.85756 * 22 20 19 42 42 H 1.09000 * 109.47087 * 64.85489 * 22 20 19 43 43 H 1.09002 * 109.47017 * 184.85880 * 22 20 19 44 44 H 1.07999 * 125.51006 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2220 -0.0005 5 6 3.5273 1.2787 0.0006 6 6 4.2842 2.4325 0.0011 7 6 5.6260 2.0403 0.0071 8 6 6.8195 2.9604 0.0149 9 7 6.8980 3.6495 1.3099 10 6 7.6872 4.8838 1.2023 11 6 7.4322 5.7498 2.4090 12 1 6.8148 5.3835 3.2160 13 6 7.9869 7.0099 2.4829 14 7 7.7640 7.7658 3.5357 15 14 9.0552 7.6434 1.0876 16 1 8.2053 8.3467 0.0935 17 1 10.0678 8.5857 1.6280 18 1 9.7418 6.5014 0.4321 19 6 7.4456 2.7631 2.3456 20 6 6.3503 1.8136 2.8353 21 6 6.9365 0.8477 3.8669 22 6 5.2229 2.6238 3.4782 23 6 5.6627 0.6859 0.0045 24 7 4.3988 0.2126 -0.0022 25 1 4.1462 -0.7240 -0.0049 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9109 3.4460 0.0016 30 1 7.7277 2.3787 -0.1428 31 1 6.7162 3.6962 -0.7826 32 1 8.7471 4.6342 1.1517 33 1 7.3974 5.4229 0.3004 34 1 8.1546 8.6522 3.5879 35 1 8.2695 2.1835 1.9292 36 1 7.8080 3.3615 3.1814 37 1 5.9556 1.2480 1.9912 38 1 7.3313 1.4133 4.7110 39 1 6.1564 0.1710 4.2155 40 1 7.7397 0.2705 3.4088 41 1 5.6330 3.2547 4.2668 42 1 4.7484 3.2495 2.7223 43 1 4.4842 1.9445 3.9037 44 1 6.5585 0.0827 0.0082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768153338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:08 Heat of formation + Delta-G solvation = -36.904526 kcal Electronic energy + Delta-G solvation = -24444.581701 eV Core-core repulsion = 20977.088051 eV Total energy + Delta-G solvation = -3467.493650 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47420 -39.93424 -37.39567 -36.46233 -34.00286 -32.57401 -31.34205 -30.00399 -28.13205 -27.38784 -26.53582 -25.94789 -23.70947 -23.03579 -20.52158 -20.26456 -19.71470 -19.27690 -18.31703 -17.07431 -16.61768 -16.49428 -15.81714 -15.16671 -14.49937 -14.37996 -13.98669 -13.73091 -13.64730 -13.53385 -13.24072 -13.11746 -12.72935 -12.36444 -12.32220 -12.21916 -12.16105 -11.68321 -11.50709 -11.26499 -10.97982 -10.95084 -10.75788 -10.64364 -10.47021 -10.28547 -10.08815 -9.83464 -9.80042 -9.21997 -8.66762 -8.49455 -7.99527 -7.25100 -5.97588 -3.93676 1.26575 2.54229 2.69133 3.15631 3.23970 3.33406 3.40856 3.42022 4.48234 4.80652 4.88005 4.89322 4.97883 5.08507 5.29427 5.33367 5.37566 5.39287 5.52280 5.56713 5.81176 5.82538 6.00164 6.10114 6.13157 6.20789 6.23824 6.30266 6.32871 6.41923 6.55247 6.61244 6.71476 6.83219 6.90772 6.99057 7.04659 7.09069 7.19927 7.38775 7.70127 7.71062 8.03559 8.17025 8.75295 9.14170 9.64732 11.15735 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.004132 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.029417 B = 6774.794074 C = 7185.029432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.370 6.370 3 C 0.536 3.464 4 O -0.499 6.499 5 C -0.062 4.062 6 C -0.055 4.055 7 C -0.149 4.149 8 C 0.118 3.882 9 N -0.518 5.518 10 C 0.163 3.837 11 C -0.502 4.502 12 H 0.082 0.918 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.873 3.127 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.269 1.269 19 C 0.071 3.929 20 C -0.102 4.102 21 C -0.145 4.145 22 C -0.127 4.127 23 C 0.036 3.964 24 N -0.530 5.530 25 H 0.419 0.581 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.152 0.848 30 H 0.032 0.968 31 H 0.075 0.925 32 H -0.014 1.014 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.016 0.984 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.027 0.973 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.421 -19.887 -7.687 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.287 6.287 3 C 0.382 3.618 4 O -0.387 6.387 5 C -0.171 4.171 6 C -0.081 4.081 7 C -0.156 4.156 8 C -0.011 4.011 9 N -0.241 5.241 10 C 0.037 3.963 11 C -0.541 4.541 12 H 0.100 0.900 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.701 3.299 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.194 1.194 19 C -0.057 4.057 20 C -0.120 4.120 21 C -0.203 4.203 22 C -0.185 4.185 23 C -0.102 4.102 24 N -0.125 5.125 25 H 0.257 0.743 26 H 0.118 0.882 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.170 0.830 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.003 0.997 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.187 -19.402 -7.473 22.345 hybrid contribution 1.104 -0.152 -0.811 1.379 sum -7.082 -19.554 -8.284 22.386 Atomic orbital electron populations 1.23231 0.75948 1.03468 1.02796 1.86543 1.23750 1.33223 1.85202 1.19888 0.87166 0.81539 0.73196 1.90921 1.65437 1.35731 1.46572 1.19172 0.86081 0.88474 1.23421 1.21270 0.91630 0.96868 0.98381 1.19466 0.95164 0.92338 1.08608 1.20500 0.92228 0.94774 0.93556 1.61813 1.53764 1.05210 1.03319 1.20199 0.90455 0.87471 0.98195 1.21059 1.30759 0.98687 1.03552 0.89973 1.24896 0.96235 0.96697 0.95569 1.69897 1.45309 1.10076 1.28844 0.86900 0.80872 0.79066 0.83093 1.20223 1.21422 1.19366 1.22106 0.93695 0.93839 0.96108 1.21399 0.96587 0.96070 0.97967 1.21829 0.99887 0.98986 0.99589 1.21586 0.97005 0.99001 1.00859 1.21745 0.86984 0.95280 1.06142 1.41683 1.05665 1.08414 1.56789 0.74328 0.88232 0.91710 0.91834 0.83020 0.95015 0.90663 0.99660 0.95845 0.92809 0.96574 0.89958 0.90367 0.92870 0.93633 0.93697 0.93169 0.91229 0.95360 0.81348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.37 -4.12 10.58 -41.02 -0.43 -4.55 16 3 C 0.54 7.50 7.93 34.06 0.27 7.77 16 4 O -0.50 -8.43 16.68 -19.36 -0.32 -8.75 16 5 C -0.06 -0.84 7.10 -81.99 -0.58 -1.42 16 6 C -0.05 -0.84 10.51 -39.09 -0.41 -1.25 16 7 C -0.15 -2.11 3.83 -105.02 -0.40 -2.51 16 8 C 0.12 1.91 5.53 -4.97 -0.03 1.88 16 9 N -0.52 -10.29 3.79 -237.51 -0.90 -11.19 16 10 C 0.16 3.84 3.77 -4.97 -0.02 3.82 16 11 C -0.50 -14.07 8.95 -34.44 -0.31 -14.38 16 12 H 0.08 2.52 7.82 -52.49 -0.41 2.11 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 14 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 15 Si 0.87 21.47 27.37 -169.99 -4.65 16.81 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.27 -6.33 6.69 56.52 0.38 -5.95 16 19 C 0.07 1.30 4.23 -3.82 -0.02 1.29 16 20 C -0.10 -1.61 2.68 -90.62 -0.24 -1.85 16 21 C -0.14 -1.98 9.19 37.16 0.34 -1.64 16 22 C -0.13 -2.27 9.00 37.16 0.33 -1.93 16 23 C 0.04 0.39 9.57 -17.16 -0.16 0.23 16 24 N -0.53 -5.43 6.07 -9.52 -0.06 -5.49 16 25 H 0.42 3.03 8.96 -40.82 -0.37 2.66 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.15 2.55 8.06 -52.49 -0.42 2.12 16 30 H 0.03 0.47 7.63 -51.93 -0.40 0.07 16 31 H 0.08 1.23 7.61 -51.93 -0.40 0.83 16 32 H -0.01 -0.34 7.45 -51.93 -0.39 -0.73 16 33 H 0.02 0.55 6.83 -51.93 -0.35 0.20 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.02 0.28 7.64 -51.93 -0.40 -0.12 16 36 H 0.08 1.77 6.95 -51.93 -0.36 1.40 16 37 H 0.08 1.15 3.66 -51.93 -0.19 0.96 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.38 7.73 -51.93 -0.40 0.98 16 43 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -32.80 359.51 -7.48 -40.28 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.04 Total: 1.18 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.26 Total: -6.76 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.19 Total: -43.62 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.76 Total: -13.30 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.65 Total: 16.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.80 -7.48 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.371 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds