Wall clock time and date at job start Tue Mar 31 2020 07:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34894 * 116.99638 * 2 1 4 4 O 1.21623 * 120.00412 * 359.97438 * 3 2 1 5 5 C 1.46495 * 119.99854 * 179.97438 * 3 2 1 6 6 C 1.37994 * 126.26644 * 180.02562 * 5 3 2 7 7 C 1.39793 * 106.97032 * 179.76329 * 6 5 3 8 8 C 1.50700 * 126.07881 * 180.23986 * 7 6 5 9 9 N 1.46907 * 109.46865 * 69.02001 * 8 7 6 10 10 C 1.46905 * 110.99582 * 201.55384 * 9 8 7 11 11 C 1.50703 * 109.46552 * 164.19521 * 10 9 8 12 12 H 1.08002 * 120.00582 * 4.91491 * 11 10 9 13 13 C 1.37880 * 119.99719 * 184.92005 * 11 10 9 14 14 N 1.31514 * 120.00050 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00138 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47108 * 89.99778 * 15 13 11 17 17 H 1.48498 * 109.47078 * 210.00127 * 15 13 11 18 18 H 1.48506 * 109.46705 * 330.00196 * 15 13 11 19 19 C 1.46903 * 111.00002 * 77.60260 * 9 8 7 20 20 C 1.53005 * 109.46929 * 280.91186 * 19 9 8 21 21 C 1.52997 * 109.47054 * 177.39700 * 20 19 9 22 22 C 1.52998 * 109.47229 * 297.39930 * 20 19 9 23 23 C 1.35488 * 107.84604 * 0.24113 * 7 6 5 24 24 N 1.34961 * 108.97935 * 359.97438 * 23 7 6 25 25 H 0.97004 * 125.62908 * 180.02562 * 24 23 7 26 26 H 1.08997 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46735 * 300.00040 * 1 2 3 28 28 H 1.09003 * 109.46788 * 59.99768 * 1 2 3 29 29 H 1.08002 * 126.51361 * 0.02562 * 6 5 3 30 30 H 1.08995 * 109.47239 * 189.01806 * 8 7 6 31 31 H 1.08997 * 109.47285 * 309.02079 * 8 7 6 32 32 H 1.08999 * 109.47230 * 284.19287 * 10 9 8 33 33 H 1.08997 * 109.46951 * 44.19714 * 10 9 8 34 34 H 0.97001 * 119.99883 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.46988 * 40.91092 * 19 9 8 36 36 H 1.08999 * 109.46704 * 160.91841 * 19 9 8 37 37 H 1.09006 * 109.46687 * 57.39934 * 20 19 9 38 38 H 1.09001 * 109.47063 * 59.99814 * 21 20 19 39 39 H 1.08993 * 109.46943 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46739 * 300.00115 * 21 20 19 41 41 H 1.08998 * 109.46754 * 304.85756 * 22 20 19 42 42 H 1.09000 * 109.47087 * 64.85489 * 22 20 19 43 43 H 1.09002 * 109.47017 * 184.85880 * 22 20 19 44 44 H 1.07999 * 125.51006 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2220 -0.0005 5 6 3.5273 1.2787 0.0006 6 6 4.2842 2.4325 0.0011 7 6 5.6260 2.0403 0.0071 8 6 6.8195 2.9604 0.0149 9 7 6.8980 3.6495 1.3099 10 6 7.6872 4.8838 1.2023 11 6 7.4322 5.7498 2.4090 12 1 6.8148 5.3835 3.2160 13 6 7.9869 7.0099 2.4829 14 7 7.7640 7.7658 3.5357 15 14 9.0552 7.6434 1.0876 16 1 8.2053 8.3467 0.0935 17 1 10.0678 8.5857 1.6280 18 1 9.7418 6.5014 0.4321 19 6 7.4456 2.7631 2.3456 20 6 6.3503 1.8136 2.8353 21 6 6.9365 0.8477 3.8669 22 6 5.2229 2.6238 3.4782 23 6 5.6627 0.6859 0.0045 24 7 4.3988 0.2126 -0.0022 25 1 4.1462 -0.7240 -0.0049 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9109 3.4460 0.0016 30 1 7.7277 2.3787 -0.1428 31 1 6.7162 3.6962 -0.7826 32 1 8.7471 4.6342 1.1517 33 1 7.3974 5.4229 0.3004 34 1 8.1546 8.6522 3.5879 35 1 8.2695 2.1835 1.9292 36 1 7.8080 3.3615 3.1814 37 1 5.9556 1.2480 1.9912 38 1 7.3313 1.4133 4.7110 39 1 6.1564 0.1710 4.2155 40 1 7.7397 0.2705 3.4088 41 1 5.6330 3.2547 4.2668 42 1 4.7484 3.2495 2.7223 43 1 4.4842 1.9445 3.9037 44 1 6.5585 0.0827 0.0082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768153338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:07 Heat of formation + Delta-G solvation = -58.893136 kcal Electronic energy + Delta-G solvation = -24445.535199 eV Core-core repulsion = 20977.088051 eV Total energy + Delta-G solvation = -3468.447148 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.49280 -40.95305 -38.85486 -37.49009 -35.50136 -34.50651 -32.68004 -31.04111 -29.67525 -28.51465 -27.83349 -27.23918 -25.25481 -24.16412 -22.26293 -21.29096 -20.85792 -20.52875 -19.44836 -18.68680 -18.06643 -17.45728 -16.90253 -16.56859 -16.22220 -15.75909 -15.23215 -15.08145 -14.87528 -14.60336 -14.49877 -14.41297 -14.10053 -13.88048 -13.69578 -13.52227 -13.08762 -13.04845 -12.95236 -12.82724 -12.56650 -12.22534 -12.13709 -11.88085 -11.85877 -11.80189 -11.64176 -11.46254 -11.34415 -11.21830 -10.71418 -9.74270 -9.03799 -8.78841 -8.21387 -6.22853 0.22155 1.38037 1.39344 1.49904 1.62385 1.66527 2.13362 2.28938 2.39520 3.11997 3.47129 3.92880 4.10224 4.20359 4.24046 4.29921 4.30822 4.32084 4.40456 4.49764 4.64465 4.69976 4.77652 4.81888 4.86771 4.91171 4.97392 5.04604 5.10918 5.15227 5.20410 5.23896 5.26267 5.30899 5.39721 5.62415 5.68036 5.70946 5.74821 5.92901 6.14179 6.57091 6.61084 6.69713 6.83052 6.85663 7.40152 8.95774 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.004132 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.029417 B = 6774.794074 C = 7185.029432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.537 3.463 4 O -0.540 6.540 5 C -0.070 4.070 6 C -0.080 4.080 7 C -0.174 4.174 8 C 0.120 3.880 9 N -0.537 5.537 10 C 0.173 3.827 11 C -0.505 4.505 12 H 0.035 0.965 13 C 0.003 3.997 14 N -0.954 5.954 15 Si 0.947 3.053 16 H -0.269 1.269 17 H -0.285 1.285 18 H -0.246 1.246 19 C 0.074 3.926 20 C -0.092 4.092 21 C -0.141 4.141 22 C -0.121 4.121 23 C 0.071 3.929 24 N -0.505 5.505 25 H 0.439 0.561 26 H 0.139 0.861 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.059 0.941 31 H 0.067 0.933 32 H -0.011 1.011 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.099 0.901 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.018 0.982 42 H 0.040 0.960 43 H 0.047 0.953 44 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 -23.745 -9.744 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.385 3.615 4 O -0.431 6.431 5 C -0.180 4.180 6 C -0.108 4.108 7 C -0.180 4.180 8 C -0.008 4.008 9 N -0.260 5.260 10 C 0.046 3.954 11 C -0.543 4.543 12 H 0.053 0.947 13 C -0.193 4.193 14 N -0.595 5.595 15 Si 0.771 3.229 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.170 1.170 19 C -0.054 4.054 20 C -0.110 4.110 21 C -0.198 4.198 22 C -0.178 4.178 23 C -0.069 4.069 24 N -0.101 5.101 25 H 0.280 0.720 26 H 0.157 0.843 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.007 0.993 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.099 -23.338 -9.541 26.194 hybrid contribution 0.630 0.963 -0.109 1.155 sum -6.469 -22.376 -9.650 25.212 Atomic orbital electron populations 1.23575 0.74166 1.05950 1.02524 1.86530 1.25423 1.31333 1.84470 1.20018 0.87426 0.81755 0.72291 1.90902 1.66343 1.37234 1.48635 1.18952 0.86210 0.88894 1.23982 1.21129 0.93099 0.96361 1.00188 1.19287 0.93644 0.93740 1.11354 1.20495 0.94255 0.95072 0.90964 1.61703 1.53331 1.05058 1.05922 1.19930 0.91014 0.88767 0.95698 1.21315 1.29413 0.99561 1.04041 0.94682 1.25865 0.97984 0.96978 0.98508 1.70073 1.47242 1.10703 1.31499 0.85715 0.78850 0.78933 0.79392 1.19471 1.21139 1.16960 1.22068 0.95303 0.93550 0.94445 1.21365 0.94873 0.95657 0.99102 1.21793 1.01100 0.98555 0.98386 1.21503 0.98180 0.98882 0.99248 1.22249 0.88172 0.94150 1.02298 1.41631 1.04938 1.08767 1.54803 0.71957 0.84300 0.92302 0.91945 0.86259 0.92323 0.91477 0.99317 0.95627 0.92739 0.94125 0.94316 0.88287 0.94478 0.91805 0.91158 0.96244 0.94091 0.93441 0.76844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.64 16 2 O -0.36 -7.33 10.58 -58.08 -0.61 -7.94 16 3 C 0.54 14.78 7.93 69.97 0.55 15.33 16 4 O -0.54 -18.87 16.68 19.43 0.32 -18.54 16 5 C -0.07 -1.80 7.10 40.32 0.29 -1.52 16 6 C -0.08 -2.49 10.51 22.59 0.24 -2.25 16 7 C -0.17 -4.57 3.83 -20.12 -0.08 -4.64 16 8 C 0.12 3.66 5.53 85.56 0.47 4.13 16 9 N -0.54 -21.42 3.79 -905.33 -3.43 -24.85 16 10 C 0.17 8.24 3.77 85.56 0.32 8.56 16 11 C -0.50 -29.69 8.95 25.60 0.23 -29.46 16 12 H 0.03 2.33 7.82 -2.91 -0.02 2.30 16 13 C 0.00 0.17 5.47 84.66 0.46 0.63 16 14 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 15 Si 0.95 44.86 27.37 68.60 1.88 46.73 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.25 -10.66 6.69 99.48 0.67 -10.00 16 19 C 0.07 2.70 4.23 86.30 0.37 3.06 16 20 C -0.09 -2.76 2.68 -10.79 -0.03 -2.79 16 21 C -0.14 -3.44 9.19 71.98 0.66 -2.77 16 22 C -0.12 -4.44 9.00 71.98 0.65 -3.80 16 23 C 0.07 1.21 9.57 83.58 0.80 2.01 16 24 N -0.51 -8.34 6.07 -184.05 -1.12 -9.46 16 25 H 0.44 4.12 8.96 -92.71 -0.83 3.29 16 26 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 30 H 0.06 1.48 7.63 -2.39 -0.02 1.46 16 31 H 0.07 2.13 7.61 -2.39 -0.02 2.11 16 32 H -0.01 -0.50 7.45 -2.39 -0.02 -0.52 16 33 H 0.03 1.21 6.83 -2.39 -0.02 1.19 16 34 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 35 H 0.04 1.27 7.64 -2.39 -0.02 1.25 16 36 H 0.04 1.73 6.95 -2.39 -0.02 1.71 16 37 H 0.10 2.57 3.66 -2.38 -0.01 2.56 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.04 1.72 7.73 -2.39 -0.02 1.70 16 43 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 44 H 0.22 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -77.84 359.51 3.59 -74.26 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.12 Total: 12.68 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 6.13 Total: -11.85 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -4.25 Total: -95.33 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.29 Total: -26.49 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.73 kcal Total: -77.84 3.59 -74.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.362 kcal (2) G-P(sol) polarization free energy of solvation -77.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds