Wall clock time and date at job start Tue Mar 31 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34232 * 125.74320 * 2 1 4 4 C 1.38127 * 107.40836 * 179.88328 * 3 2 1 5 5 C 1.47278 * 126.42726 * 180.11013 * 4 3 2 6 6 O 1.21524 * 119.99915 * 185.79507 * 5 4 3 7 7 O 1.34759 * 120.00057 * 5.79976 * 5 4 3 8 8 C 1.45198 * 116.99812 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46675 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47107 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47432 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99960 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00449 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99499 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00423 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47513 * 59.99511 * 15 13 11 17 17 H 1.48499 * 109.47496 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47157 * 299.99541 * 15 13 11 19 19 C 1.41350 * 107.14516 * 0.37515 * 4 3 2 20 20 C 1.50693 * 125.99461 * 179.79230 * 19 4 3 21 21 C 1.53000 * 109.47384 * 177.90351 * 20 19 4 22 22 C 1.53004 * 109.47136 * 297.90551 * 20 19 4 23 23 C 1.53007 * 109.47423 * 57.90258 * 20 19 4 24 24 N 1.30435 * 108.01136 * 359.76872 * 19 4 3 25 25 H 1.09003 * 109.47041 * 269.71731 * 1 2 3 26 26 H 1.09000 * 109.47358 * 29.71854 * 1 2 3 27 27 H 1.08999 * 109.47119 * 149.71879 * 1 2 3 28 28 H 1.07995 * 126.29125 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47034 * 299.99745 * 8 7 5 30 30 H 1.09001 * 109.46946 * 60.00174 * 8 7 5 31 31 H 1.09003 * 109.47195 * 300.00116 * 9 8 7 32 32 H 1.08993 * 109.47422 * 60.00131 * 9 8 7 33 33 H 1.09003 * 109.46873 * 299.99927 * 10 9 8 34 34 H 1.09006 * 109.47430 * 59.99590 * 10 9 8 35 35 H 0.97000 * 119.99704 * 180.02562 * 14 13 11 36 36 H 1.09004 * 109.47014 * 59.99954 * 21 20 19 37 37 H 1.08998 * 109.46886 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47126 * 299.99813 * 21 20 19 39 39 H 1.09007 * 109.47144 * 64.99340 * 22 20 19 40 40 H 1.08991 * 109.47528 * 184.99925 * 22 20 19 41 41 H 1.09003 * 109.46824 * 305.00175 * 22 20 19 42 42 H 1.08997 * 109.46773 * 54.84568 * 23 20 19 43 43 H 1.08993 * 109.46957 * 174.84840 * 23 20 19 44 44 H 1.09007 * 109.46860 * 294.84969 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5603 0.6550 0.0027 5 6 4.7632 1.5047 0.0059 6 8 5.8638 1.0002 -0.0982 7 8 4.6433 2.8418 0.1245 8 6 5.8713 3.6165 0.1206 9 6 5.5370 5.1027 0.2629 10 6 6.8308 5.9193 0.2583 11 6 6.5017 7.3831 0.3991 12 1 5.4724 7.6995 0.4831 13 6 7.5143 8.3186 0.4196 14 7 8.7676 7.9334 0.3169 15 14 7.1062 10.1331 0.5935 16 1 6.3840 10.3580 1.8714 17 1 8.3620 10.9257 0.5890 18 1 6.2480 10.5584 -0.5414 19 6 3.5309 -0.7582 -0.0045 20 6 4.7315 -1.6689 -0.0091 21 6 4.2667 -3.1259 0.0362 22 6 5.5460 -1.4328 -1.2826 23 6 5.6010 -1.3728 1.2146 24 7 2.2824 -1.1357 -0.0061 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8874 -0.5182 28 1 1.9160 2.1168 -0.0004 29 1 6.5007 3.3039 0.9538 30 1 6.4018 3.4520 -0.8173 31 1 4.9077 5.4150 -0.5705 32 1 5.0063 5.2676 1.2006 33 1 7.4605 5.6071 1.0915 34 1 7.3613 5.7543 -0.6797 35 1 9.4800 8.5915 0.3317 36 1 3.6472 -3.3369 -0.8355 37 1 5.1351 -3.7846 0.0325 38 1 3.6865 -3.2941 0.9435 39 1 5.9515 -0.4210 -1.2722 40 1 6.3639 -2.1516 -1.3293 41 1 4.9026 -1.5574 -2.1536 42 1 4.9962 -1.4520 2.1178 43 1 6.4195 -2.0911 1.2611 44 1 6.0069 -0.3641 1.1364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768968028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:21 Heat of formation + Delta-G solvation = -28.834400 kcal Electronic energy + Delta-G solvation = -23629.239514 eV Core-core repulsion = 20162.095811 eV Total energy + Delta-G solvation = -3467.143704 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.76215 -39.69340 -37.24261 -35.94780 -33.95529 -32.99985 -31.73326 -30.71945 -27.51661 -27.26413 -27.13072 -26.74212 -23.94686 -22.64413 -21.87671 -20.57963 -20.27485 -18.49312 -17.65149 -16.94596 -16.30670 -16.22691 -15.75188 -15.49128 -15.03494 -14.47808 -14.26981 -14.21057 -13.99782 -13.61462 -13.22697 -12.87898 -12.77378 -12.32606 -12.16532 -12.11350 -12.05052 -11.83206 -11.50887 -11.27617 -11.16195 -10.95691 -10.89391 -10.73671 -10.60484 -10.55875 -10.20165 -9.89996 -9.67213 -9.58599 -9.47006 -9.16416 -8.88334 -8.37675 -6.02701 -4.05753 1.25368 1.94327 2.05199 3.08174 3.24809 3.32387 3.36963 3.39340 4.03497 4.40817 4.44149 4.55784 4.74137 4.84064 5.00086 5.01174 5.08224 5.27305 5.33143 5.33302 5.45262 5.63852 5.64433 5.69497 5.71882 5.84974 5.91428 5.95767 6.06576 6.07962 6.09886 6.31319 6.40860 6.52855 6.53878 6.57081 6.68562 6.96489 7.08695 7.37063 7.61544 7.73342 7.95696 8.15334 8.37215 9.00362 9.58342 11.08717 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.002894 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.483301 B = 9672.277246 C =10661.098834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.366 5.366 3 C 0.127 3.873 4 C -0.274 4.274 5 C 0.535 3.465 6 O -0.503 6.503 7 O -0.358 6.358 8 C 0.071 3.929 9 C -0.109 4.109 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.151 3.849 20 C 0.017 3.983 21 C -0.135 4.135 22 C -0.154 4.154 23 C -0.155 4.155 24 N -0.299 5.299 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.193 0.807 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.362 -19.744 -0.898 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.143 5.143 3 C -0.025 4.025 4 C -0.287 4.287 5 C 0.381 3.619 6 O -0.394 6.394 7 O -0.275 6.275 8 C -0.002 4.002 9 C -0.146 4.146 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.017 4.017 20 C 0.015 3.985 21 C -0.193 4.193 22 C -0.212 4.212 23 C -0.212 4.212 24 N -0.119 5.119 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.210 0.790 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.852 -20.778 -0.933 26.151 hybrid contribution 0.271 1.778 0.105 1.801 sum -15.581 -19.000 -0.828 24.586 Atomic orbital electron populations 1.22003 0.73368 1.05010 1.03968 1.48359 1.07215 1.03964 1.54739 1.23327 0.90231 0.94048 0.94854 1.19401 0.91325 0.92724 1.25274 1.19932 0.87873 0.81238 0.72847 1.90594 1.28146 1.73959 1.46665 1.86529 1.39435 1.18339 1.83183 1.23466 0.82961 0.91588 1.02186 1.21753 1.01966 0.89206 1.01705 1.19042 0.90662 0.93884 0.97692 1.21139 0.92985 0.91405 1.50522 0.92533 1.25027 0.95026 0.99150 0.95239 1.69957 0.98905 1.34230 1.50240 0.86616 0.77595 0.84846 0.78693 1.20206 1.21263 1.20204 1.22435 0.93077 0.91747 0.94456 1.19027 0.89250 0.92165 0.98079 1.21815 1.00935 0.94344 1.02188 1.22167 0.99075 1.05488 0.94441 1.22163 0.98831 1.05200 0.95016 1.77200 1.00990 1.07000 1.26671 0.90143 0.88877 0.88908 0.79019 0.91476 0.91483 0.92264 0.92251 0.96222 0.96222 0.92834 0.92497 0.92267 0.92564 0.88451 0.92239 0.93627 0.93555 0.92140 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.44 59.85 0.68 1.16 16 2 N -0.37 -3.62 3.98 -67.58 -0.27 -3.89 16 3 C 0.13 1.35 11.34 -16.54 -0.19 1.16 16 4 C -0.27 -3.74 5.96 -105.08 -0.63 -4.37 16 5 C 0.54 8.44 7.69 34.41 0.26 8.70 16 6 O -0.50 -8.52 9.79 -19.28 -0.19 -8.71 16 7 O -0.36 -5.92 10.06 -40.65 -0.41 -6.33 16 8 C 0.07 1.29 5.48 37.16 0.20 1.49 16 9 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 10 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 11 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.15 2.01 5.64 -82.01 -0.46 1.54 16 20 C 0.02 0.21 0.75 -155.66 -0.12 0.09 16 21 C -0.14 -1.41 7.96 37.16 0.30 -1.11 16 22 C -0.15 -1.91 8.27 37.16 0.31 -1.60 16 23 C -0.15 -1.93 8.21 37.16 0.31 -1.62 16 24 N -0.30 -3.75 11.79 33.90 0.40 -3.35 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.42 4.69 -51.93 -0.24 1.18 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 1.38 4.59 -51.92 -0.24 1.14 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -32.61 361.21 -6.55 -39.16 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -7.21 Total: -2.90 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -0.03 Total: -9.84 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.87 Total: -33.25 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.60 Total: -15.04 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.61 -6.55 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768968028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.325 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds