Wall clock time and date at job start Tue Mar 31 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34232 * 125.74320 * 2 1 4 4 C 1.38127 * 107.40836 * 179.88328 * 3 2 1 5 5 C 1.47278 * 126.42726 * 180.11013 * 4 3 2 6 6 O 1.21524 * 119.99915 * 185.79507 * 5 4 3 7 7 O 1.34759 * 120.00057 * 5.79976 * 5 4 3 8 8 C 1.45198 * 116.99812 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46675 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47107 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47432 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99960 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00449 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99499 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00423 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47513 * 59.99511 * 15 13 11 17 17 H 1.48499 * 109.47496 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47157 * 299.99541 * 15 13 11 19 19 C 1.41350 * 107.14516 * 0.37515 * 4 3 2 20 20 C 1.50693 * 125.99461 * 179.79230 * 19 4 3 21 21 C 1.53000 * 109.47384 * 177.90351 * 20 19 4 22 22 C 1.53004 * 109.47136 * 297.90551 * 20 19 4 23 23 C 1.53007 * 109.47423 * 57.90258 * 20 19 4 24 24 N 1.30435 * 108.01136 * 359.76872 * 19 4 3 25 25 H 1.09003 * 109.47041 * 269.71731 * 1 2 3 26 26 H 1.09000 * 109.47358 * 29.71854 * 1 2 3 27 27 H 1.08999 * 109.47119 * 149.71879 * 1 2 3 28 28 H 1.07995 * 126.29125 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47034 * 299.99745 * 8 7 5 30 30 H 1.09001 * 109.46946 * 60.00174 * 8 7 5 31 31 H 1.09003 * 109.47195 * 300.00116 * 9 8 7 32 32 H 1.08993 * 109.47422 * 60.00131 * 9 8 7 33 33 H 1.09003 * 109.46873 * 299.99927 * 10 9 8 34 34 H 1.09006 * 109.47430 * 59.99590 * 10 9 8 35 35 H 0.97000 * 119.99704 * 180.02562 * 14 13 11 36 36 H 1.09004 * 109.47014 * 59.99954 * 21 20 19 37 37 H 1.08998 * 109.46886 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47126 * 299.99813 * 21 20 19 39 39 H 1.09007 * 109.47144 * 64.99340 * 22 20 19 40 40 H 1.08991 * 109.47528 * 184.99925 * 22 20 19 41 41 H 1.09003 * 109.46824 * 305.00175 * 22 20 19 42 42 H 1.08997 * 109.46773 * 54.84568 * 23 20 19 43 43 H 1.08993 * 109.46957 * 174.84840 * 23 20 19 44 44 H 1.09007 * 109.46860 * 294.84969 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5603 0.6550 0.0027 5 6 4.7632 1.5047 0.0059 6 8 5.8638 1.0002 -0.0982 7 8 4.6433 2.8418 0.1245 8 6 5.8713 3.6165 0.1206 9 6 5.5370 5.1027 0.2629 10 6 6.8308 5.9193 0.2583 11 6 6.5017 7.3831 0.3991 12 1 5.4724 7.6995 0.4831 13 6 7.5143 8.3186 0.4196 14 7 8.7676 7.9334 0.3169 15 14 7.1062 10.1331 0.5935 16 1 6.3840 10.3580 1.8714 17 1 8.3620 10.9257 0.5890 18 1 6.2480 10.5584 -0.5414 19 6 3.5309 -0.7582 -0.0045 20 6 4.7315 -1.6689 -0.0091 21 6 4.2667 -3.1259 0.0362 22 6 5.5460 -1.4328 -1.2826 23 6 5.6010 -1.3728 1.2146 24 7 2.2824 -1.1357 -0.0061 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8874 -0.5182 28 1 1.9160 2.1168 -0.0004 29 1 6.5007 3.3039 0.9538 30 1 6.4018 3.4520 -0.8173 31 1 4.9077 5.4150 -0.5705 32 1 5.0063 5.2676 1.2006 33 1 7.4605 5.6071 1.0915 34 1 7.3613 5.7543 -0.6797 35 1 9.4800 8.5915 0.3317 36 1 3.6472 -3.3369 -0.8355 37 1 5.1351 -3.7846 0.0325 38 1 3.6865 -3.2941 0.9435 39 1 5.9515 -0.4210 -1.2722 40 1 6.3639 -2.1516 -1.3293 41 1 4.9026 -1.5574 -2.1536 42 1 4.9962 -1.4520 2.1178 43 1 6.4195 -2.0911 1.2611 44 1 6.0069 -0.3641 1.1364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768968028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:21 Heat of formation + Delta-G solvation = -47.007157 kcal Electronic energy + Delta-G solvation = -23630.027544 eV Core-core repulsion = 20162.095811 eV Total energy + Delta-G solvation = -3467.931733 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.66648 -40.92272 -38.27873 -37.17815 -35.85996 -33.82708 -33.55016 -31.72808 -29.00918 -28.14912 -28.11374 -27.78744 -25.50672 -24.03704 -22.70784 -22.09888 -21.61674 -19.42879 -18.69030 -18.59018 -17.86807 -17.59114 -16.57608 -16.52312 -16.45955 -15.90043 -15.64364 -15.13737 -14.95683 -14.86832 -14.23423 -14.02602 -13.89265 -13.69544 -13.49419 -13.35454 -13.03152 -12.94948 -12.80944 -12.52807 -12.45719 -12.42185 -12.32277 -12.04131 -11.87641 -11.80041 -11.73366 -11.44626 -11.25338 -11.24011 -10.95945 -10.54323 -10.43823 -9.79066 -8.19393 -6.30860 0.33330 0.95755 1.32712 1.42930 1.46065 1.53910 1.84914 2.14265 2.43454 3.14459 3.21096 3.58070 3.92559 4.03142 4.08208 4.08674 4.12755 4.15798 4.28725 4.42206 4.45255 4.48891 4.58605 4.71469 4.79325 4.80562 4.85926 4.92594 4.96784 5.00669 5.05021 5.11572 5.11869 5.17689 5.34347 5.47750 5.50829 5.51319 5.68213 5.79769 5.83278 5.86307 6.22119 6.47582 6.84825 6.93991 7.38526 8.92663 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.002894 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.483301 B = 9672.277246 C =10661.098834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.357 5.357 3 C 0.144 3.856 4 C -0.308 4.308 5 C 0.532 3.468 6 O -0.521 6.521 7 O -0.355 6.355 8 C 0.082 3.918 9 C -0.092 4.092 10 C 0.026 3.974 11 C -0.543 4.543 12 H 0.066 0.934 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.265 1.265 19 C 0.140 3.860 20 C 0.012 3.988 21 C -0.127 4.127 22 C -0.149 4.149 23 C -0.150 4.150 24 N -0.315 5.315 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.224 0.776 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.066 0.934 33 H -0.004 1.004 34 H -0.004 1.004 35 H 0.264 0.736 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.962 -19.621 -0.814 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.133 5.133 3 C -0.010 4.010 4 C -0.321 4.321 5 C 0.379 3.621 6 O -0.412 6.412 7 O -0.272 6.272 8 C 0.009 3.991 9 C -0.130 4.130 10 C -0.011 4.011 11 C -0.581 4.581 12 H 0.084 0.916 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.028 4.028 20 C 0.010 3.990 21 C -0.184 4.184 22 C -0.207 4.207 23 C -0.207 4.207 24 N -0.135 5.135 25 H 0.114 0.886 26 H 0.141 0.859 27 H 0.117 0.883 28 H 0.241 0.759 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.496 -20.687 -0.848 27.763 hybrid contribution 0.990 1.667 0.074 1.941 sum -17.506 -19.020 -0.774 25.861 Atomic orbital electron populations 1.22471 0.70353 1.06884 1.05594 1.48788 1.08763 1.03059 1.52714 1.23745 0.89219 0.95409 0.92592 1.19408 0.91654 0.92733 1.28340 1.20343 0.88639 0.80746 0.72372 1.90608 1.29101 1.73984 1.47542 1.86495 1.38018 1.19016 1.83648 1.23078 0.83595 0.90725 1.01727 1.21438 0.99269 0.89867 1.02416 1.18927 0.92572 0.94216 0.95404 1.21614 0.93562 0.92679 1.50255 0.91582 1.26011 0.94786 1.04419 0.94723 1.70101 1.00066 1.35971 1.51286 0.85457 0.77542 0.78500 0.79296 1.19030 1.21054 1.18991 1.22577 0.93640 0.91811 0.94747 1.19086 0.89120 0.93266 0.97529 1.21738 1.01449 0.93241 1.01996 1.22082 0.99478 1.04356 0.94754 1.22084 0.99266 1.04095 0.95304 1.77145 1.00905 1.08395 1.27055 0.88566 0.85882 0.88272 0.75944 0.92050 0.91988 0.91401 0.91495 0.98594 0.98550 0.92721 0.92608 0.90781 0.92727 0.90821 0.90939 0.93585 0.93580 0.90835 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.44 127.77 1.46 2.01 16 2 N -0.36 -6.18 3.98 -367.73 -1.46 -7.65 16 3 C 0.14 2.73 11.34 84.30 0.96 3.69 16 4 C -0.31 -8.20 5.96 -20.16 -0.12 -8.32 16 5 C 0.53 16.90 7.69 70.20 0.54 17.44 16 6 O -0.52 -18.28 9.79 19.76 0.19 -18.08 16 7 O -0.36 -11.61 10.06 -56.70 -0.57 -12.18 16 8 C 0.08 3.04 5.48 71.98 0.39 3.43 16 9 C -0.09 -3.76 5.53 30.59 0.17 -3.59 16 10 C 0.03 1.36 4.97 29.85 0.15 1.51 16 11 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 12 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 13 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 14 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 15 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 19 C 0.14 3.64 5.64 43.53 0.25 3.88 16 20 C 0.01 0.29 0.75 -52.93 -0.04 0.25 16 21 C -0.13 -2.49 7.96 71.98 0.57 -1.92 16 22 C -0.15 -3.70 8.27 71.98 0.60 -3.11 16 23 C -0.15 -3.76 8.21 71.98 0.59 -3.16 16 24 N -0.31 -7.44 11.79 -46.65 -0.55 -7.99 16 25 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.22 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 35 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 2.22 4.69 -2.38 -0.01 2.21 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 2.14 4.59 -2.38 -0.01 2.13 16 Total: -1.00 -71.39 361.21 7.10 -64.28 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.97 Total: 10.27 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 6.21 Total: -17.80 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.73 Total: -72.21 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.38 Total: -30.26 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -71.39 7.10 -64.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768968028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.277 kcal (2) G-P(sol) polarization free energy of solvation -71.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds