Wall clock time and date at job start Tue Mar 31 2020 07:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46536 * 2 1 4 4 C 1.53000 * 109.47149 * 175.46107 * 3 2 1 5 5 C 1.52998 * 109.47140 * 294.41033 * 4 3 2 6 6 N 1.46501 * 109.47172 * 295.45497 * 3 2 1 7 7 C 1.35042 * 124.88707 * 275.00515 * 6 3 2 8 8 C 1.35342 * 107.24470 * 179.74488 * 7 6 3 9 9 C 1.41547 * 105.50162 * 0.41574 * 8 7 6 10 10 C 1.47577 * 126.52250 * 179.84752 * 9 8 7 11 11 O 1.21495 * 120.00328 * 359.70797 * 10 9 8 12 12 O 1.34727 * 120.00030 * 179.71605 * 10 9 8 13 13 C 1.45202 * 117.00304 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47376 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47318 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47133 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00268 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99983 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00222 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46819 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46837 * 120.00059 * 20 18 16 23 23 H 1.48497 * 109.47242 * 240.00097 * 20 18 16 24 24 N 1.28475 * 124.87692 * 95.02766 * 6 3 2 25 25 H 1.08991 * 109.47547 * 306.82204 * 1 2 3 26 26 H 1.08998 * 109.47323 * 66.82420 * 1 2 3 27 27 H 1.09004 * 109.46745 * 186.82457 * 1 2 3 28 28 H 1.08994 * 109.47382 * 239.99689 * 2 1 3 29 29 H 1.09002 * 109.47386 * 119.99210 * 2 1 3 30 30 H 1.09000 * 109.47774 * 55.46164 * 3 2 1 31 31 H 1.09004 * 109.47352 * 54.40243 * 4 3 2 32 32 H 1.09000 * 109.47959 * 174.40734 * 4 3 2 33 33 H 1.09000 * 109.47304 * 186.17282 * 5 4 3 34 34 H 1.09003 * 109.47224 * 306.17238 * 5 4 3 35 35 H 1.09000 * 109.47355 * 66.16675 * 5 4 3 36 36 H 1.08007 * 126.37439 * 0.05871 * 7 6 3 37 37 H 1.08001 * 127.24812 * 180.25822 * 8 7 6 38 38 H 1.08999 * 109.47142 * 299.99610 * 13 12 10 39 39 H 1.09006 * 109.47078 * 59.99656 * 13 12 10 40 40 H 1.08999 * 109.47067 * 300.00147 * 14 13 12 41 41 H 1.08998 * 109.46961 * 59.99692 * 14 13 12 42 42 H 1.09006 * 109.46340 * 299.99765 * 15 14 13 43 43 H 1.08998 * 109.47075 * 59.99469 * 15 14 13 44 44 H 0.96997 * 120.00040 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5656 1.4442 0.1142 5 6 3.9756 0.8835 1.4773 6 7 1.6429 2.1008 -1.2471 7 6 2.3296 2.0345 -2.4080 8 6 1.6453 2.7624 -3.3211 9 6 0.5189 3.2717 -2.6316 10 6 -0.5389 4.1339 -3.1935 11 8 -0.4881 4.4773 -4.3579 12 8 -1.5608 4.5404 -2.4154 13 6 -2.5648 5.3871 -3.0346 14 6 -3.6375 5.7438 -2.0037 15 6 -4.6957 6.6355 -2.6565 16 6 -5.7520 6.9873 -1.6409 17 1 -5.6765 6.6121 -0.6310 18 6 -6.8149 7.7882 -2.0009 19 7 -6.9068 8.2456 -3.2306 20 14 -8.1247 8.2238 -0.7422 21 1 -7.7918 7.5890 0.5583 22 1 -8.1783 9.6982 -0.5736 23 1 -9.4448 7.7308 -1.2107 24 7 0.5915 2.8245 -1.3935 25 1 -0.3634 0.6158 0.8226 26 1 -0.3634 0.4044 -0.9447 27 1 -0.3633 -1.0204 0.1221 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6117 1.9794 0.8465 31 1 3.9898 0.8246 -0.6760 32 1 3.9364 2.4643 0.0145 33 1 5.0535 0.9857 1.6030 34 1 3.4640 1.4352 2.2660 35 1 3.7014 -0.1699 1.5344 36 1 3.2505 1.4963 -2.5777 37 1 1.9055 2.9232 -4.3569 38 1 -2.0946 6.2997 -3.4008 39 1 -3.0245 4.8556 -3.8679 40 1 -4.1076 4.8310 -1.6379 41 1 -3.1781 6.2750 -1.1702 42 1 -4.2258 7.5484 -3.0226 43 1 -5.1550 6.1038 -3.4898 44 1 -7.6548 8.8087 -3.4840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770133892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:06 Heat of formation + Delta-G solvation = -35.110944 kcal Electronic energy + Delta-G solvation = -22931.403362 eV Core-core repulsion = 19463.987487 eV Total energy + Delta-G solvation = -3467.415875 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.94131 -39.81057 -37.45554 -36.25068 -33.90999 -32.47636 -31.91285 -31.51001 -30.88109 -27.55534 -26.67760 -24.23725 -23.37911 -22.86678 -22.48394 -20.38786 -20.15652 -20.02572 -17.98410 -17.18661 -16.63651 -16.41788 -15.97241 -15.77935 -15.25618 -14.67162 -14.42902 -14.40064 -13.95395 -13.71615 -13.51305 -13.09932 -12.86289 -12.77885 -12.50691 -12.14421 -12.06851 -12.02714 -11.80859 -11.54307 -11.39244 -11.24131 -10.99496 -10.94234 -10.65656 -10.56357 -10.40212 -10.28953 -9.64215 -9.45980 -9.43058 -9.25415 -9.09483 -8.34347 -5.99005 -4.01536 1.39993 1.92017 2.09929 3.01888 3.28316 3.33309 3.40470 3.45345 3.80408 4.13205 4.37778 4.45232 4.46564 4.53133 4.62005 4.72415 4.82327 5.00002 5.11491 5.15456 5.25672 5.32248 5.36951 5.42474 5.49894 5.52686 5.55956 5.60195 5.65358 5.67892 5.72737 5.94970 6.08948 6.18707 6.53114 6.59872 6.63406 6.91349 7.06658 7.66529 7.69303 7.78140 8.00012 8.10478 8.41779 9.05039 9.62427 11.12551 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.002547 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.615400 B =10989.613239 C =11842.906812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.145 3.855 4 C -0.134 4.134 5 C -0.150 4.150 6 N -0.272 5.272 7 C -0.022 4.022 8 C -0.175 4.175 9 C -0.004 4.004 10 C 0.550 3.450 11 O -0.505 6.505 12 O -0.343 6.343 13 C 0.068 3.932 14 C -0.108 4.108 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.227 5.227 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.181 0.819 37 H 0.164 0.836 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.862 -18.830 6.881 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.045 3.955 4 C -0.173 4.173 5 C -0.208 4.208 6 N -0.062 5.062 7 C -0.164 4.164 8 C -0.203 4.203 9 C -0.162 4.162 10 C 0.392 3.608 11 O -0.392 6.392 12 O -0.258 6.258 13 C -0.005 4.005 14 C -0.146 4.146 15 C -0.014 4.014 16 C -0.557 4.557 17 H 0.076 0.924 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.063 5.063 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.198 0.802 37 H 0.181 0.819 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 24.178 -18.604 7.538 31.425 hybrid contribution -0.368 0.354 -0.378 0.635 sum 23.810 -18.251 7.160 30.842 Atomic orbital electron populations 1.21787 0.94269 1.02091 1.03173 1.22025 0.97725 0.93934 1.03639 1.21862 0.96046 0.94103 0.83534 1.21909 0.92384 1.03174 0.99802 1.21776 1.02063 1.01424 0.95558 1.45833 1.15716 1.34424 1.10201 1.22747 1.01504 1.06002 0.86107 1.21746 0.95084 1.02141 1.01281 1.20909 0.98254 1.05477 0.91520 1.19579 0.80266 0.77314 0.83682 1.90846 1.76520 1.54530 1.17300 1.86636 1.33121 1.62486 1.43552 1.23548 0.87058 0.92355 0.97555 1.21753 0.94562 1.00946 0.97307 1.19063 0.92040 0.94011 0.96253 1.21220 1.07051 1.30404 0.97022 0.92382 1.25037 0.98171 0.95993 0.95362 1.69981 1.31163 1.34794 1.17486 0.86495 0.81544 0.78116 0.81611 1.19679 1.21003 1.21000 1.73771 1.05676 1.07214 1.19682 0.91888 0.92299 0.92207 0.91030 0.89241 0.86995 0.90547 0.90483 0.91621 0.91940 0.91864 0.80227 0.81856 0.91391 0.91400 0.92136 0.92129 0.96194 0.96193 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.62 37.16 0.36 -0.89 16 2 C -0.14 -0.75 5.48 -26.73 -0.15 -0.89 16 3 C 0.14 0.94 2.65 -67.93 -0.18 0.76 16 4 C -0.13 -0.54 4.87 -26.73 -0.13 -0.67 16 5 C -0.15 -0.43 9.53 37.16 0.35 -0.07 16 6 N -0.27 -2.71 2.83 -54.83 -0.16 -2.86 16 7 C -0.02 -0.19 10.55 -17.17 -0.18 -0.37 16 8 C -0.18 -2.05 10.81 -39.35 -0.43 -2.47 16 9 C 0.00 -0.06 7.17 -82.79 -0.59 -0.65 16 10 C 0.55 9.99 7.97 34.54 0.28 10.26 16 11 O -0.51 -10.00 16.72 -19.26 -0.32 -10.32 16 12 O -0.34 -6.63 10.23 -40.56 -0.41 -7.05 16 13 C 0.07 1.36 5.48 37.16 0.20 1.56 16 14 C -0.11 -2.38 5.53 -26.73 -0.15 -2.53 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 20 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 24 N -0.23 -3.18 11.46 33.41 0.38 -2.80 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.63 7.54 -51.93 -0.39 0.24 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.32 6.52 -51.93 -0.34 -0.02 16 30 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.22 7.35 -51.93 -0.38 -0.16 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.06 0.14 6.79 -51.93 -0.35 -0.22 16 36 H 0.18 0.83 7.32 -52.48 -0.38 0.45 16 37 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -34.15 370.04 -7.69 -41.84 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -7.31 Total: -5.47 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.28 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.96 Total: -32.26 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.74 Total: -17.37 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.15 -7.69 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770133892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.726 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds