Wall clock time and date at job start Tue Mar 31 2020 07:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46536 * 2 1 4 4 C 1.53000 * 109.47149 * 175.46107 * 3 2 1 5 5 C 1.52998 * 109.47140 * 294.41033 * 4 3 2 6 6 N 1.46501 * 109.47172 * 295.45497 * 3 2 1 7 7 C 1.35042 * 124.88707 * 275.00515 * 6 3 2 8 8 C 1.35342 * 107.24470 * 179.74488 * 7 6 3 9 9 C 1.41547 * 105.50162 * 0.41574 * 8 7 6 10 10 C 1.47577 * 126.52250 * 179.84752 * 9 8 7 11 11 O 1.21495 * 120.00328 * 359.70797 * 10 9 8 12 12 O 1.34727 * 120.00030 * 179.71605 * 10 9 8 13 13 C 1.45202 * 117.00304 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47376 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47318 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47133 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00268 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99983 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00222 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46819 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46837 * 120.00059 * 20 18 16 23 23 H 1.48497 * 109.47242 * 240.00097 * 20 18 16 24 24 N 1.28475 * 124.87692 * 95.02766 * 6 3 2 25 25 H 1.08991 * 109.47547 * 306.82204 * 1 2 3 26 26 H 1.08998 * 109.47323 * 66.82420 * 1 2 3 27 27 H 1.09004 * 109.46745 * 186.82457 * 1 2 3 28 28 H 1.08994 * 109.47382 * 239.99689 * 2 1 3 29 29 H 1.09002 * 109.47386 * 119.99210 * 2 1 3 30 30 H 1.09000 * 109.47774 * 55.46164 * 3 2 1 31 31 H 1.09004 * 109.47352 * 54.40243 * 4 3 2 32 32 H 1.09000 * 109.47959 * 174.40734 * 4 3 2 33 33 H 1.09000 * 109.47304 * 186.17282 * 5 4 3 34 34 H 1.09003 * 109.47224 * 306.17238 * 5 4 3 35 35 H 1.09000 * 109.47355 * 66.16675 * 5 4 3 36 36 H 1.08007 * 126.37439 * 0.05871 * 7 6 3 37 37 H 1.08001 * 127.24812 * 180.25822 * 8 7 6 38 38 H 1.08999 * 109.47142 * 299.99610 * 13 12 10 39 39 H 1.09006 * 109.47078 * 59.99656 * 13 12 10 40 40 H 1.08999 * 109.47067 * 300.00147 * 14 13 12 41 41 H 1.08998 * 109.46961 * 59.99692 * 14 13 12 42 42 H 1.09006 * 109.46340 * 299.99765 * 15 14 13 43 43 H 1.08998 * 109.47075 * 59.99469 * 15 14 13 44 44 H 0.96997 * 120.00040 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5656 1.4442 0.1142 5 6 3.9756 0.8835 1.4773 6 7 1.6429 2.1008 -1.2471 7 6 2.3296 2.0345 -2.4080 8 6 1.6453 2.7624 -3.3211 9 6 0.5189 3.2717 -2.6316 10 6 -0.5389 4.1339 -3.1935 11 8 -0.4881 4.4773 -4.3579 12 8 -1.5608 4.5404 -2.4154 13 6 -2.5648 5.3871 -3.0346 14 6 -3.6375 5.7438 -2.0037 15 6 -4.6957 6.6355 -2.6565 16 6 -5.7520 6.9873 -1.6409 17 1 -5.6765 6.6121 -0.6310 18 6 -6.8149 7.7882 -2.0009 19 7 -6.9068 8.2456 -3.2306 20 14 -8.1247 8.2238 -0.7422 21 1 -7.7918 7.5890 0.5583 22 1 -8.1783 9.6982 -0.5736 23 1 -9.4448 7.7308 -1.2107 24 7 0.5915 2.8245 -1.3935 25 1 -0.3634 0.6158 0.8226 26 1 -0.3634 0.4044 -0.9447 27 1 -0.3633 -1.0204 0.1221 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6117 1.9794 0.8465 31 1 3.9898 0.8246 -0.6760 32 1 3.9364 2.4643 0.0145 33 1 5.0535 0.9857 1.6030 34 1 3.4640 1.4352 2.2660 35 1 3.7014 -0.1699 1.5344 36 1 3.2505 1.4963 -2.5777 37 1 1.9055 2.9232 -4.3569 38 1 -2.0946 6.2997 -3.4008 39 1 -3.0245 4.8556 -3.8679 40 1 -4.1076 4.8310 -1.6379 41 1 -3.1781 6.2750 -1.1702 42 1 -4.2258 7.5484 -3.0226 43 1 -5.1550 6.1038 -3.4898 44 1 -7.6548 8.8087 -3.4840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770133892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:05 Heat of formation + Delta-G solvation = -54.352185 kcal Electronic energy + Delta-G solvation = -22932.237725 eV Core-core repulsion = 19463.987487 eV Total energy + Delta-G solvation = -3468.250238 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.81591 -41.28402 -38.08275 -37.72189 -35.95444 -33.73762 -32.91098 -32.56703 -31.74997 -29.19866 -27.72256 -25.68295 -24.38472 -23.73648 -23.35492 -22.19814 -21.39397 -20.78175 -18.88547 -18.68380 -18.20841 -17.82429 -17.38658 -16.93328 -16.49622 -15.71124 -15.59178 -15.14722 -15.03758 -14.83262 -14.52716 -14.24596 -13.98935 -13.85113 -13.79324 -13.39582 -13.12836 -12.88121 -12.85142 -12.57999 -12.52416 -12.42769 -12.11936 -12.04224 -12.01706 -11.95193 -11.78540 -11.60294 -11.51437 -11.45433 -11.24600 -10.58890 -10.32607 -10.11776 -8.22703 -6.34340 0.21515 1.11377 1.24476 1.40512 1.41069 1.54932 1.78082 2.04168 2.40798 3.10834 3.19351 3.55250 3.70717 3.84875 3.93151 3.96468 4.02204 4.09235 4.24887 4.36455 4.40030 4.42679 4.56324 4.62347 4.66375 4.72297 4.76313 4.83232 4.87425 4.97949 5.03868 5.04423 5.13278 5.19600 5.24897 5.31780 5.32655 5.43929 5.47317 5.61615 5.78592 5.85379 6.17950 6.51359 6.80911 6.91703 7.34925 8.89859 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.002547 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.615400 B =10989.613239 C =11842.906812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.127 4.127 3 C 0.136 3.864 4 C -0.126 4.126 5 C -0.150 4.150 6 N -0.260 5.260 7 C 0.005 3.995 8 C -0.188 4.188 9 C -0.041 4.041 10 C 0.547 3.453 11 O -0.530 6.530 12 O -0.350 6.350 13 C 0.077 3.923 14 C -0.092 4.092 15 C 0.027 3.973 16 C -0.543 4.543 17 H 0.063 0.937 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.971 3.029 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.277 1.277 24 N -0.255 5.255 25 H 0.052 0.948 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.231 0.769 37 H 0.173 0.827 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.064 0.936 42 H -0.001 1.001 43 H -0.001 1.001 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.859 -20.746 8.629 35.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.165 4.165 3 C 0.037 3.963 4 C -0.165 4.165 5 C -0.207 4.207 6 N -0.051 5.051 7 C -0.137 4.137 8 C -0.216 4.216 9 C -0.197 4.197 10 C 0.391 3.609 11 O -0.419 6.419 12 O -0.265 6.265 13 C 0.003 3.997 14 C -0.130 4.130 15 C -0.010 4.010 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.795 3.205 21 H -0.185 1.185 22 H -0.202 1.202 23 H -0.202 1.202 24 N -0.093 5.093 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.247 0.753 37 H 0.190 0.810 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 26.187 -20.530 9.299 34.550 hybrid contribution -0.892 0.859 -0.880 1.520 sum 25.295 -19.671 8.418 33.131 Atomic orbital electron populations 1.21791 0.96531 1.02247 1.00935 1.22034 0.95534 0.93390 1.05543 1.22269 0.98024 0.94233 0.81820 1.21912 0.89874 1.03391 1.01306 1.21792 1.02467 1.01946 0.94543 1.46282 1.14371 1.32743 1.11672 1.23416 1.01842 1.04057 0.84426 1.22009 0.94414 1.02791 1.02371 1.20767 0.98885 1.07062 0.92940 1.20138 0.80178 0.77122 0.83439 1.90812 1.77080 1.55751 1.18214 1.86619 1.33512 1.62491 1.43900 1.23236 0.87073 0.92649 0.96712 1.21453 0.94019 1.00157 0.97368 1.18934 0.92825 0.93663 0.95590 1.21627 1.07958 1.30841 0.97634 0.91853 1.26029 1.00696 0.95677 0.97577 1.70110 1.32189 1.35395 1.19628 0.85312 0.78182 0.78032 0.78986 1.18503 1.20238 1.20232 1.73695 1.07712 1.08519 1.19414 0.92889 0.95506 0.91125 0.89894 0.86421 0.87930 0.88393 0.91201 0.90872 0.92557 0.90679 0.75281 0.80955 0.91501 0.91540 0.91740 0.91708 0.98292 0.98297 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.62 71.98 0.69 -1.70 16 2 C -0.13 -1.04 5.48 30.59 0.17 -0.87 16 3 C 0.14 1.44 2.65 44.99 0.12 1.56 16 4 C -0.13 -0.55 4.87 30.59 0.15 -0.40 16 5 C -0.15 -0.34 9.53 71.98 0.69 0.34 16 6 N -0.26 -4.74 2.83 -327.39 -0.93 -5.67 16 7 C 0.00 0.07 10.55 83.53 0.88 0.95 16 8 C -0.19 -4.21 10.81 22.42 0.24 -3.97 16 9 C -0.04 -1.28 7.17 42.42 0.30 -0.98 16 10 C 0.55 20.70 7.97 70.29 0.56 21.26 16 11 O -0.53 -21.84 16.72 19.85 0.33 -21.51 16 12 O -0.35 -14.07 10.23 -56.37 -0.58 -14.64 16 13 C 0.08 3.20 5.48 71.98 0.39 3.59 16 14 C -0.09 -4.19 5.53 30.59 0.17 -4.02 16 15 C 0.03 1.49 4.97 29.85 0.15 1.64 16 16 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 17 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 19 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 20 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 N -0.25 -7.17 11.46 -48.23 -0.55 -7.72 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.03 0.57 7.54 -2.39 -0.02 0.55 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.12 0.36 6.52 -2.39 -0.02 0.34 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 0.05 7.35 -2.39 -0.02 0.03 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.07 0.01 6.79 -2.39 -0.02 0.00 16 36 H 0.23 0.88 7.32 -2.91 -0.02 0.86 16 37 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 40 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 43 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -76.65 370.04 6.76 -69.89 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 0.96 Total: 4.05 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 5.21 Total: -13.87 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -1.19 Total: -71.12 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.24 Total: -36.15 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.65 6.76 -69.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770133892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.540 kcal (2) G-P(sol) polarization free energy of solvation -76.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds